CmaCh04G019490 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionMyb family transcription factor family protein
LocationCma_Chr04 : 10785121 .. 10786411 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGAAATGGAAGTGTGAGACAGTATATAAGATCCAAAGTCCCAAGATTGAGATGGACTCCCGAGCTTCACCACTGCTTTGTTCTTGCAATTCAAACACTCGGTGGCCATCACAGTATGCCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTACTTCCTGCTCTGCTCACCTTTTGACTGCCTTGTTCTTTCTTTGGTTGATTCATTAGAAGCAACGCCTAAGCTGGTTCTTCAGCTCATGGATGTGAAAGGACTCACCATTTCACACGTAAAGAGCCATCTTCAGGTCCTCTTTTCCACCTTTTCATTCTTCCTCTTCTTCTTTATCCTTTTTCTATTCTCATTTTTGTTTATTTGTAACAGATGTATAGAAGCACCAGGGCAGATATGGGAAGACAAGGTTCATTATTTTATATGATAATTCTCCTCAATTGGAACACTGCCAAATCTCTGGAATCTCATCTTTTACCATCCAAATCCACTTCATTTATTGTCTTTTTCTTTGTTTTGTTATAGATCATAAGTGTTCTAGTGTTGGAAGAAAGGCAAGTAATTTCGAGGAGGAAGACGAGGACGGGTGTGTAGAAGAAGAAAACGTTAAGGGAGGTGGAGTAAGTTACAGATCAAGAACAACAACTCAAACTTCAGCTTCCAAAAGGTGTGCCTGCCTATAATAATAATAATAATAATAATAATAATAAATAGAGAACAACAAACATTTGTGTTCTGTGTTTGATTGTTTGGTGGTGTTATCAGAGGGAATAGAAGCTCAAGAAATGATGGGTTTTATGGACATAAAGAGATAAAGATGATGATGATGGTGGGAGATTCTGAATCACACGGCGTTGCACTCAACCAATCGGCTGCTAACCATGCTTTCTTCAAGGTACTTTCAAATTATGATTTTCACAATCTTCTCATTTTTTTTTTTTAATTAAATAAAATTATGTTTAGATTTCACAGAAGATGAAGAAGGAAGATGAGGAGAAGGAACTATCTCTGTGCCTGTGTTTACAACACCATTGCCATGGTTCAAGCAGCGAAATCAGTGAGGCGATTTCATCTTCAAGTTCGAAGTTGGATAATATTAATAATAATCATAATAATAATAGTTATAGAGACTGTTCGAGTTGGTCGTACGGAAGGCAACAACAGCAGCAAATTAGTGTTAATTTAGAGTTGTCAATGGCGCTTTGTGGTAGCCGATGAGGGTTTGTGTGTAATTAATTTTACTTTCCAAATTCTCTCTTTTTTTAATATAATCGTTGTTTAGAACTCGAATGCTGCTG

mRNA sequence

ATGAGTAGAAATGGAAGTGTGAGACAGTATATAAGATCCAAAGTCCCAAGATTGAGATGGACTCCCGAGCTTCACCACTGCTTTGTTCTTGCAATTCAAACACTCGGTGGCCATCACAAAGCAACGCCTAAGCTGGTTCTTCAGCTCATGGATGTGAAAGGACTCACCATTTCACACGTAAAGAGCCATCTTCAGATGTATAGAAGCACCAGGGCAGATATGGGAAGACAAGATCATAAGTGTTCTAGTGTTGGAAGAAAGGCAAGTAATTTCGAGGAGGAAGACGAGGACGGGTGTGTAGAAGAAGAAAACGTTAAGGGAGGTGGAGTAAGTTACAGATCAAGAACAACAACTCAAACTTCAGCTTCCAAAAGAGGGAATAGAAGCTCAAGAAATGATGGGTTTTATGGACATAAAGAGATAAAGATGATGATGATGGTGGGAGATTCTGAATCACACGGCGTTGCACTCAACCAATCGGCTGCTAACCATGCTTTCTTCAAGATTTCACAGAAGATGAAGAAGGAAGATGAGGAGAAGGAACTATCTCTGTGCCTGTGTTTACAACACCATTGCCATGGTTCAAGCAGCGAAATCAGTGAGGCGATTTCATCTTCAAGTTCGAAGTTGGATAATATTAATAATAATCATAATAATAATAGTTATAGAGACTGTTCGAGTTGGTCGTACGGAAGGCAACAACAGCAGCAAATTAGTGTTAATTTAGAGTTGTCAATGGCGCTTTGTGGTAGCCGATGAGGGTTTGTGTGTAATTAATTTTACTTTCCAAATTCTCTCTTTTTTTAATATAATCGTTGTTTAGAACTCGAATGCTGCTG

Coding sequence (CDS)

ATGAGTAGAAATGGAAGTGTGAGACAGTATATAAGATCCAAAGTCCCAAGATTGAGATGGACTCCCGAGCTTCACCACTGCTTTGTTCTTGCAATTCAAACACTCGGTGGCCATCACAAAGCAACGCCTAAGCTGGTTCTTCAGCTCATGGATGTGAAAGGACTCACCATTTCACACGTAAAGAGCCATCTTCAGATGTATAGAAGCACCAGGGCAGATATGGGAAGACAAGATCATAAGTGTTCTAGTGTTGGAAGAAAGGCAAGTAATTTCGAGGAGGAAGACGAGGACGGGTGTGTAGAAGAAGAAAACGTTAAGGGAGGTGGAGTAAGTTACAGATCAAGAACAACAACTCAAACTTCAGCTTCCAAAAGAGGGAATAGAAGCTCAAGAAATGATGGGTTTTATGGACATAAAGAGATAAAGATGATGATGATGGTGGGAGATTCTGAATCACACGGCGTTGCACTCAACCAATCGGCTGCTAACCATGCTTTCTTCAAGATTTCACAGAAGATGAAGAAGGAAGATGAGGAGAAGGAACTATCTCTGTGCCTGTGTTTACAACACCATTGCCATGGTTCAAGCAGCGAAATCAGTGAGGCGATTTCATCTTCAAGTTCGAAGTTGGATAATATTAATAATAATCATAATAATAATAGTTATAGAGACTGTTCGAGTTGGTCGTACGGAAGGCAACAACAGCAGCAAATTAGTGTTAATTTAGAGTTGTCAATGGCGCTTTGTGGTAGCCGATGA

Protein sequence

MSRNGSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSTRADMGRQDHKCSSVGRKASNFEEEDEDGCVEEENVKGGGVSYRSRTTTQTSASKRGNRSSRNDGFYGHKEIKMMMMVGDSESHGVALNQSAANHAFFKISQKMKKEDEEKELSLCLCLQHHCHGSSSEISEAISSSSSKLDNINNNHNNNSYRDCSSWSYGRQQQQQISVNLELSMALCGSR
Homology
[Close]
BLAST of CmaCh04G019490 vs. Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-27
Identity = 103/266 (38.72%), Postives = 138/266 (51.88%), Query Frame = 1 

Query: 5   GSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHL 64
           G VR Y+RS VPRLRWTPELH  FV A+  LGG +KATPKLVL++MDVKGLTISHVKSHL
Sbjct: 13  GGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHL 72

Query: 65  QMYRSTRADMGRQDHKCSSVGRKASNFEEEDEDGCVEEENVKG------GGVSYRSRTTT 124
           QMYR +R  +  +  + SS   +    ++ +ED   +  +V        G  S+  R   
Sbjct: 73  QMYRGSRITLLGKPEESSSPSSRRRRRQDNEEDHLHDNLSVHARNDCLLGFHSFNFR--E 132

Query: 125 QTSASKRGNRSSRNDGFYGHKEIKMMMMVGDS---ESHGVALNQSAANHAFFKISQKMKK 184
           QTSA+   +    N      +  K     G+S   +SH     ++  N   +K + +  +
Sbjct: 133 QTSATDNDDDDFLN--IMNMERTKTFAGNGESIKFQSHHSLEAENTKN--IWKNTWRENE 192

Query: 185 EDEEKELSLCLCLQH-HCH---------GSSSEISEAISSSSSKLDNINNNHNNNSYRDC 244
            +EE+ELSL L L H H H          S SE SEA+SSSS              +RDC
Sbjct: 193 HEEEEELSLSLSLNHPHNHQQRWKSNASSSLSETSEAVSSSSGPF----------IFRDC 252

Query: 245 SSWSYGRQQQQQISVNLELSMALCGS 252
            + S       +I +NL LS +L  S
Sbjct: 253 FASS-------KIDLNLNLSFSLLHS 255

[Close]
BLAST of CmaCh04G019490 vs. Swiss-Prot
Match: KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.0e-15
Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1 

Query: 14  KVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSTRAD 73
           + PR+RWT  LH  FV A++ LGGH +ATPK VL+LMDVK LT++HVKSHLQMYR+    
Sbjct: 218 RAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTV--- 277

Query: 74  MGRQDHKCSSVGRKASNFEEEDEDGCVEEE-NVKGGGVSYRSRT 117
                        K +N      DG  EEE  + G  V ++S T
Sbjct: 278 -------------KTTNKPAASSDGSGEEEMGINGNEVHHQSST 305

[Close]
BLAST of CmaCh04G019490 vs. Swiss-Prot
Match: KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.4e-15
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 1 

Query: 14  KVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSTRA 73
           + PR+RWT  LH  FV A+Q LGGH +ATPK VL+LMDV+ LT++HVKSHLQMYR+ ++
Sbjct: 163 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKS 221

[Close]
BLAST of CmaCh04G019490 vs. Swiss-Prot
Match: KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-14
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 14  KVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSTR-A 73
           + PR+RWT  LH  FV A++ LGGH +ATPK VL+LMDVK LT++HVKSHLQMYR+ +  
Sbjct: 212 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT 271

Query: 74  DMGRQDHKCSSVGRKASNFEEEDED 98
           D        S V    S+ +   +D
Sbjct: 272 DKAAASSGQSDVYENGSSGDNNSDD 296

[Close]
BLAST of CmaCh04G019490 vs. Swiss-Prot
Match: KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 48/123 (39.02%), Postives = 69/123 (56.10%), Query Frame = 1 

Query: 14  KVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSTRAD 73
           + PR+RWT  LH  FV A+Q LGGH +ATPK VL+LM+VK LT++HVKSHLQMYR+    
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV--- 163

Query: 74  MGRQDHKCSSVGRKASNFEEEDEDGCVEEEN---VKGGGVSYRSRTTTQTSASKRGNRSS 133
                 KC+  G       E++ +  +E+ N       G    S  ++    ++R + SS
Sbjct: 164 ------KCTDKGSPGEGKVEKEAEQRIEDNNNNEEADEGTDTNSPNSSSVQKTQRASWSS 217

[Close]
BLAST of CmaCh04G019490 vs. TrEMBL
Match: A0A0A0KSV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G276460 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 5.6e-73
Identity = 178/271 (65.68%), Postives = 199/271 (73.43%), Query Frame = 1 

Query: 3   RNGSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKS 62
           RNGSVRQYIRSKVPRLRWTP+LHH FVLAI+ LGGH KATPKLVLQLMDVKGLTISHVKS
Sbjct: 8   RNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKS 67

Query: 63  HLQMYRSTRADMGRQDHKCSS-VGRKASNFE-EEDEDGCVEEENVKGGGVSYRSRTTTQT 122
           HLQMYRS RADMGRQD  CSS + RK SN E +E EDGCVEEE VKGG + YRSR T Q+
Sbjct: 68  HLQMYRSMRADMGRQDRSCSSTLQRKVSNLEDDEGEDGCVEEEVVKGGRIIYRSR-TIQS 127

Query: 123 SASKRGNRS------SRNDGFYGH------KEIKMMMMVGDSESHGVALNQSA-ANHAFF 182
            ASKR          SRN+ +YG+      + IK   M  DSES G  LNQSA ANHAF 
Sbjct: 128 PASKRVKIGWEERIISRNEEYYGNGNNGERENIKRKKMC-DSESDGFILNQSATANHAFK 187

Query: 183 KISQKMK------KEDEEKELSLCLCLQHHCHGSSSEISEAISSSSSKLDNINNNHNNNS 242
            + Q+        KE +  ELSL L LQHH H SSSE+SEAISSSSSKLD   +N+NN+ 
Sbjct: 188 MMKQEAHERAEKIKESKCFELSLSLSLQHHYHHSSSEMSEAISSSSSKLD---DNNNNDD 247

Query: 243 YRDCSSWSYGRQQQQQISVNLELSMALCGSR 253
           YRD  SWSYGR +Q +I VNL+L+MALCGSR
Sbjct: 248 YRDSWSWSYGR-EQPKIGVNLDLTMALCGSR 272

[Close]
BLAST of CmaCh04G019490 vs. TrEMBL
Match: A0A059D699_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02627 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.6e-35
Identity = 130/303 (42.90%), Postives = 153/303 (50.50%), Query Frame = 1 

Query: 3   RNGSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKS 62
           R+G+VRQY+RSKVPRLRWTPELH CFV AIQ LGG  KATPKLVLQLMDV+GLTISHVKS
Sbjct: 6   RSGTVRQYVRSKVPRLRWTPELHQCFVHAIQRLGGQDKATPKLVLQLMDVRGLTISHVKS 65

Query: 63  HLQMYRSTRADMGRQDHKCSSVGRKASNFEEEDED-GCVEEENVKGG------------- 122
           HLQMYRS R+D+GR D  C    R+A+  ++ D D GCVEE N   G             
Sbjct: 66  HLQMYRSMRSDLGRSDRGCGQQKRRAAEDDDPDRDGGCVEEVNDDEGPPHAFAKPVHHSR 125

Query: 123 ----GVSYRSRT----TTQTSA----SKRGNRSSRNDGFYGHKEIKMMMMVGDSESHGVA 182
                   RSRT    TT TSA    +  G      DGF  H       M  D  S    
Sbjct: 126 FACSSPCKRSRTEKVATTTTSAVAEQAPYGFEVGGVDGFRWHTP----CMPRDLHSFNDP 185

Query: 183 LNQSAANHAFFKISQKMK-----------------------KEDEEKELSLCLCLQ---- 242
           L  +A   + F +  K++                       +  +  ELSL L LQ    
Sbjct: 186 LECAAKEESKFPLIAKLQDRMQMPRKGLKLTDWRSFPLEEYEVSQGCELSLSLSLQCHSI 245

Query: 243 HHCHGSS-SEISEAISSSSSKLDNINNNHNNNSYRDCSSWSYGRQQQQQISVNLELSMAL 252
           H  +GSS SEISEA SS S               R+CS          + SVNL+LS+AL
Sbjct: 246 HRSNGSSTSEISEAFSSCSRS-------------RECSG-----PCSDKSSVNLDLSIAL 286

[Close]
BLAST of CmaCh04G019490 vs. TrEMBL
Match: A0A061EG23_THECC (Homeodomain-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_011166 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.1e-35
Identity = 124/320 (38.75%), Postives = 164/320 (51.25%), Query Frame = 1 

Query: 3   RNGSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKS 62
           R+G+VRQYIRSKVPRLRWTPELHHCFV AI+ LGG  KATPKLVLQLMDVKGLTISHVKS
Sbjct: 6   RSGAVRQYIRSKVPRLRWTPELHHCFVHAIERLGGQDKATPKLVLQLMDVKGLTISHVKS 65

Query: 63  HLQMYRSTRADMGRQDHKCSSVGRKASNFEEEDEDGCVEEEN------------------ 122
           HLQMYRS R+D+GRQD   SS  ++  +F  E+ DGCV+E +                  
Sbjct: 66  HLQMYRSMRSDLGRQDR--SSTHQRRQSF--ENHDGCVDEVSDLVFHSTSKPLEESDSHL 125

Query: 123 VKGGGVSYRSRTTTQTSASKRGNRSSRN-----DGFYGHKEIKMMMMV--GDSESHGVAL 182
           +     S R+R  T++S S +  + S+         Y   +    M V  G  E +G  +
Sbjct: 126 IYSPPPSKRARIETRSSISDQNLQCSQGICETVSNPYSFDDYLQTMAVHKGIKEGNGAFM 185

Query: 183 NQSAANHA---------------------------FFKISQKMKKE-------------- 242
            +   +H+                           F K+++   ++              
Sbjct: 186 WEHTQSHSQGQSTTFSLPYDIYNLNSFKYSMGEPDFLKVAKVEAEDHHTHVEQIVRRHAG 245

Query: 243 DEEK-----ELSLCLCLQHHCHGSSSEISEAISSSSSKLDNINNNHNNNSYRDCSSWSYG 252
           DEE+     ELSL L L HH     S  S     SSS+  ++   ++ +SY+DCS  S  
Sbjct: 246 DEEEAYGGCELSLSLSLHHHPSSQKSNTSSTSEISSSEAFSL---YSRSSYKDCSGTS-- 305

[Close]
BLAST of CmaCh04G019490 vs. TrEMBL
Match: I1NFA5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G108600 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.7e-35
Identity = 103/198 (52.02%), Postives = 117/198 (59.09%), Query Frame = 1 

Query: 3   RNGSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKS 62
           R GSVRQY+RSKVPRLRWTPELH CFV AI +LGGHHKATPKLVLQLMDVKGLTISHVKS
Sbjct: 6   REGSVRQYVRSKVPRLRWTPELHRCFVHAIDSLGGHHKATPKLVLQLMDVKGLTISHVKS 65

Query: 63  HLQMYRSTRADMGRQDHKCSSVGRKASNFEEEDEDGCVEEENVKGGGVSYRSRTTTQTSA 122
           HLQMYRS R D+GRQ    S    +  +FEE D DGCV+E N    GV Y        S 
Sbjct: 66  HLQMYRSMRGDLGRQGRTSSQ--HRNQSFEEHD-DGCVDEGN--DVGVEY--------SC 125

Query: 123 SKRGNRSSRNDGFYGHK-------EIKMMMMVGDSESHGVALNQSAAN-HAFFK-ISQKM 182
           SK   R S  D F+GH         I+    + +S      L  +  N + F+  + QK 
Sbjct: 126 SKPMGRES--DSFFGHSNLPPKRARIETRSSISESLQCSQRLCDAVQNPYCFYDYLQQKK 185

Query: 183 KKEDEEKELSLCLCLQHH 192
              DE KE S     Q H
Sbjct: 186 PMADEHKEFSTWQQAQPH 188

[Close]
BLAST of CmaCh04G019490 vs. TrEMBL
Match: A0A0B2PQX6_GLYSO (Putative Myb family transcription factor OS=Glycine soja GN=glysoja_015375 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.0e-35
Identity = 103/198 (52.02%), Postives = 117/198 (59.09%), Query Frame = 1 

Query: 3   RNGSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKS 62
           R GSVRQY+RSKVPRLRWTPELH CFV AI +LGGHHKATPKLVLQLMDVKGLTISHVKS
Sbjct: 6   REGSVRQYVRSKVPRLRWTPELHRCFVHAIDSLGGHHKATPKLVLQLMDVKGLTISHVKS 65

Query: 63  HLQMYRSTRADMGRQDHKCSSVGRKASNFEEEDEDGCVEEENVKGGGVSYRSRTTTQTSA 122
           HLQMYRS R D+GRQ    S    +  +FEE D DGCV+E N    GV Y        S 
Sbjct: 66  HLQMYRSMRGDLGRQGRTPSQ--HRNQSFEEHD-DGCVDEGN--DVGVEY--------SC 125

Query: 123 SKRGNRSSRNDGFYGHK-------EIKMMMMVGDSESHGVALNQSAAN-HAFFK-ISQKM 182
           SK   R S  D F+GH         I+    + +S      L  +  N + F+  + QK 
Sbjct: 126 SKPMGRES--DSFFGHSNLPPKRARIETRSSISESLQCSQRLCDAVQNPYCFYDYLQQKK 185

Query: 183 KKEDEEKELSLCLCLQHH 192
              DE KE S     Q H
Sbjct: 186 PMADEHKEFSTWQQAQPH 188

[Close]
BLAST of CmaCh04G019490 vs. TAIR10
Match: AT1G14600.1 (AT1G14600.1 Homeodomain-like superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 9.9e-29
Identity = 103/266 (38.72%), Postives = 138/266 (51.88%), Query Frame = 1 

Query: 5   GSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHL 64
           G VR Y+RS VPRLRWTPELH  FV A+  LGG +KATPKLVL++MDVKGLTISHVKSHL
Sbjct: 13  GGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHL 72

Query: 65  QMYRSTRADMGRQDHKCSSVGRKASNFEEEDEDGCVEEENVKG------GGVSYRSRTTT 124
           QMYR +R  +  +  + SS   +    ++ +ED   +  +V        G  S+  R   
Sbjct: 73  QMYRGSRITLLGKPEESSSPSSRRRRRQDNEEDHLHDNLSVHARNDCLLGFHSFNFR--E 132

Query: 125 QTSASKRGNRSSRNDGFYGHKEIKMMMMVGDS---ESHGVALNQSAANHAFFKISQKMKK 184
           QTSA+   +    N      +  K     G+S   +SH     ++  N   +K + +  +
Sbjct: 133 QTSATDNDDDDFLN--IMNMERTKTFAGNGESIKFQSHHSLEAENTKN--IWKNTWRENE 192

Query: 185 EDEEKELSLCLCLQH-HCH---------GSSSEISEAISSSSSKLDNINNNHNNNSYRDC 244
            +EE+ELSL L L H H H          S SE SEA+SSSS              +RDC
Sbjct: 193 HEEEEELSLSLSLNHPHNHQQRWKSNASSSLSETSEAVSSSSGPF----------IFRDC 252

Query: 245 SSWSYGRQQQQQISVNLELSMALCGS 252
            + S       +I +NL LS +L  S
Sbjct: 253 FASS-------KIDLNLNLSFSLLHS 255

[Close]
BLAST of CmaCh04G019490 vs. TAIR10
Match: AT2G02060.1 (AT2G02060.1 Homeodomain-like superfamily protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-25
Identity = 87/230 (37.83%), Postives = 126/230 (54.78%), Query Frame = 1 

Query: 7   VRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQM 66
           VR Y+RS VPRLRWTP+LH CFV A++ LGG H+ATPKLVL++MDVKGLTISHVKSHLQM
Sbjct: 21  VRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQM 80

Query: 67  YR-STRADMGRQDHKCSSVGRKASNFEEE----------DEDGCV---------EEENVK 126
           YR  ++  + + +   SS  R+  + EE+            + C+            + +
Sbjct: 81  YRGGSKLTLEKPEESSSSSIRRRQDSEEDYYLHDNLSLHTRNDCLLGFHSFPLSSHSSFR 140

Query: 127 GGGVSYRSRTTTQTSASKRGNRSSRNDGFYGHKEIKMMMMVGDSESHGVALNQSAANHAF 186
           GGG     RT  Q        ++S + G+    +   +  + D+ +          +H F
Sbjct: 141 GGG---GGRTKEQ--------QTSESGGYDDDADFLHIKKMNDTTTF--------LSHHF 200

Query: 187 FKISQKMKK---EDEEKELSLCLCLQHH---CHGSS--SEISEAISSSSS 209
            K +++ ++   E+EE++LSL L L HH    +GSS  SE SEA  S+ S
Sbjct: 201 PKGTEEWREQEHEEEEEDLSLSLSLNHHHWRSNGSSVVSETSEAAVSTCS 231

[Close]
BLAST of CmaCh04G019490 vs. TAIR10
Match: AT2G40260.1 (AT2G40260.1 Homeodomain-like superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-24
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 1 

Query: 5   GSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHL 64
           GSVR Y RSK PRLRWTPELH CF+ A++ LGG  +ATPKLVLQLM+VKGL+I+HVKSHL
Sbjct: 72  GSVRPYNRSKTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHL 131

Query: 65  QMYRSTRAD 74
           QMYRS + D
Sbjct: 132 QMYRSKKTD 140

[Close]
BLAST of CmaCh04G019490 vs. TAIR10
Match: AT2G38300.1 (AT2G38300.1 myb-like HTH transcriptional regulator family protein)

HSP 1 Score: 101.7 bits (252), Expect = 6.9e-22
Identity = 46/67 (68.66%), Postives = 57/67 (85.07%), Query Frame = 1 

Query: 7   VRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQM 66
           VR Y+RSKVPRLRWTP+LH  FV A++ LGG  +ATPKLV Q+M++KGL+I+HVKSHLQM
Sbjct: 46  VRPYVRSKVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQM 105

Query: 67  YRSTRAD 74
           YRS + D
Sbjct: 106 YRSKKID 112

[Close]
BLAST of CmaCh04G019490 vs. TAIR10
Match: AT2G42660.1 (AT2G42660.1 Homeodomain-like superfamily protein)

HSP 1 Score: 98.2 bits (243), Expect = 7.6e-21
Identity = 51/111 (45.95%), Postives = 76/111 (68.47%), Query Frame = 1 

Query: 6   SVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQ 65
           +VRQYIRS +PRLRWTP+LH  FV A+Q LGG  +ATPKLVL++M++KGL+I+HVKSHLQ
Sbjct: 41  NVRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQ 100

Query: 66  MYRSTRADMGRQDHKCSSVGRKASNFEEEDEDGCVEEENVKGGGVSYRSRT 117
           MYRS + +   +    + +  + S   +  +  C+   +++    +Y S+T
Sbjct: 101 MYRSKKLEPSSRPGFGAFMSGQRSYLMDMIDSRCIPHSDLRH---AYNSKT 148

[Close]
BLAST of CmaCh04G019490 vs. NCBI nr
Match: gi|659120469|ref|XP_008460209.1| (PREDICTED: putative Myb family transcription factor At1g14600 isoform X2 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 3.3e-74
Identity = 176/270 (65.19%), Postives = 203/270 (75.19%), Query Frame = 1 

Query: 3   RNGSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKS 62
           RNGSVRQYIRSKVPRLRWTP+LHH FVLAI+ LGGH KATPKLVLQLMDVKGLTISHVKS
Sbjct: 8   RNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKS 67

Query: 63  HLQMYRSTRADMGRQDHKCSS-VGRKASNFEEED-EDGCVEEENVKGGGVSYRSRTTTQT 122
           HLQMYRS RADMGRQD  CSS + RK SN ++++ EDGCVEEE VKGG + YRSRT  Q+
Sbjct: 68  HLQMYRSMRADMGRQDRSCSSTLQRKVSNLDDDEGEDGCVEEEVVKGGRIIYRSRTI-QS 127

Query: 123 SASKRGNRS------SRNDGFYGH-----KEIKMMMMVGDSESHGVALNQSA-ANHAFFK 182
            ASKR          SRN+ +YG+     +E      + DSES G A+NQSA ANHAF  
Sbjct: 128 PASKRVKIGWEERIISRNEAYYGNGNNGERENIRRKKMCDSESDGYAINQSATANHAFKM 187

Query: 183 ISQ----KMKKEDEEK--ELSLCLCLQHHCHGSSSEISEAISSSSSKLDNINNNHNNNSY 242
           + Q    + +K  E K  EL+L L LQHH H SSSE+SEAISSSSSKLDN   N+NN+ Y
Sbjct: 188 MKQEGHERAEKIKESKCFELTLSLSLQHHYHHSSSEMSEAISSSSSKLDN---NNNNDDY 247

Query: 243 RDCSSWSYGRQQQQQISVNLELSMALCGSR 253
           RDC SWSYGR+QQ+ I VNL+L+MALCGS+
Sbjct: 248 RDCWSWSYGREQQK-IGVNLDLTMALCGSQ 272

[Close]
BLAST of CmaCh04G019490 vs. NCBI nr
Match: gi|778701853|ref|XP_011655099.1| (PREDICTED: putative Myb family transcription factor At1g14600 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 8.1e-73
Identity = 178/271 (65.68%), Postives = 199/271 (73.43%), Query Frame = 1 

Query: 3   RNGSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKS 62
           RNGSVRQYIRSKVPRLRWTP+LHH FVLAI+ LGGH KATPKLVLQLMDVKGLTISHVKS
Sbjct: 8   RNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKS 67

Query: 63  HLQMYRSTRADMGRQDHKCSS-VGRKASNFE-EEDEDGCVEEENVKGGGVSYRSRTTTQT 122
           HLQMYRS RADMGRQD  CSS + RK SN E +E EDGCVEEE VKGG + YRSR T Q+
Sbjct: 68  HLQMYRSMRADMGRQDRSCSSTLQRKVSNLEDDEGEDGCVEEEVVKGGRIIYRSR-TIQS 127

Query: 123 SASKRGNRS------SRNDGFYGH------KEIKMMMMVGDSESHGVALNQSA-ANHAFF 182
            ASKR          SRN+ +YG+      + IK   M  DSES G  LNQSA ANHAF 
Sbjct: 128 PASKRVKIGWEERIISRNEEYYGNGNNGERENIKRKKMC-DSESDGFILNQSATANHAFK 187

Query: 183 KISQKMK------KEDEEKELSLCLCLQHHCHGSSSEISEAISSSSSKLDNINNNHNNNS 242
            + Q+        KE +  ELSL L LQHH H SSSE+SEAISSSSSKLD   +N+NN+ 
Sbjct: 188 MMKQEAHERAEKIKESKCFELSLSLSLQHHYHHSSSEMSEAISSSSSKLD---DNNNNDD 247

Query: 243 YRDCSSWSYGRQQQQQISVNLELSMALCGSR 253
           YRD  SWSYGR +Q +I VNL+L+MALCGSR
Sbjct: 248 YRDSWSWSYGR-EQPKIGVNLDLTMALCGSR 272

[Close]
BLAST of CmaCh04G019490 vs. NCBI nr
Match: gi|659120467|ref|XP_008460208.1| (PREDICTED: putative Myb family transcription factor At1g14600 isoform X1 [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 5.2e-72
Identity = 179/298 (60.07%), Postives = 204/298 (68.46%), Query Frame = 1 

Query: 3   RNGSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKS 62
           RNGSVRQYIRSKVPRLRWTP+LHH FVLAI+ LGGH KATPKLVLQLMDVKGLTISHVKS
Sbjct: 8   RNGSVRQYIRSKVPRLRWTPDLHHSFVLAIERLGGHQKATPKLVLQLMDVKGLTISHVKS 67

Query: 63  HLQMYRSTRADMGRQDHKCSS-VGRKASNF-EEEDEDGCVEEENVKGGGVSYRSRTTTQT 122
           HLQMYRS RADMGRQD  CSS + RK SN  ++E EDGCVEEE VKGG + YRSR T Q+
Sbjct: 68  HLQMYRSMRADMGRQDRSCSSTLQRKVSNLDDDEGEDGCVEEEVVKGGRIIYRSR-TIQS 127

Query: 123 SASKRGNRS------SRNDGFYGH-----KEIKMMMMVGDSESHGVALNQSA-ANHAFFK 182
            ASKR          SRN+ +YG+     +E      + DSES G A+NQSA ANHAF  
Sbjct: 128 PASKRVKIGWEERIISRNEAYYGNGNNGERENIRRKKMCDSESDGYAINQSATANHAFKM 187

Query: 183 ISQ----KMKKEDEEK--ELSLCLCLQHHCHGSSSEISEAISSSSSKLDN---------- 242
           + Q    + +K  E K  EL+L L LQHH H SSSE+SEAISSSSSKLDN          
Sbjct: 188 MKQEGHERAEKIKESKCFELTLSLSLQHHYHHSSSEMSEAISSSSSKLDNHNDDDDDDDN 247

Query: 243 ------------------INNNHNNNSYRDCSSWSYGRQQQQQISVNLELSMALCGSR 253
                              NNN+NN+ YRDC SWSYGR +QQ+I VNL+L+MALCGS+
Sbjct: 248 NNNNNNNNNNNNNNNNNDNNNNNNNDDYRDCWSWSYGR-EQQKIGVNLDLTMALCGSQ 303

[Close]
BLAST of CmaCh04G019490 vs. NCBI nr
Match: gi|702273416|ref|XP_010043897.1| (PREDICTED: uncharacterized protein LOC104432988 [Eucalyptus grandis])

HSP 1 Score: 157.9 bits (398), Expect = 2.3e-35
Identity = 130/303 (42.90%), Postives = 153/303 (50.50%), Query Frame = 1 

Query: 3   RNGSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKS 62
           R+G+VRQY+RSKVPRLRWTPELH CFV AIQ LGG  KATPKLVLQLMDV+GLTISHVKS
Sbjct: 6   RSGTVRQYVRSKVPRLRWTPELHQCFVHAIQRLGGQDKATPKLVLQLMDVRGLTISHVKS 65

Query: 63  HLQMYRSTRADMGRQDHKCSSVGRKASNFEEEDED-GCVEEENVKGG------------- 122
           HLQMYRS R+D+GR D  C    R+A+  ++ D D GCVEE N   G             
Sbjct: 66  HLQMYRSMRSDLGRSDRGCGQQKRRAAEDDDPDRDGGCVEEVNDDEGPPHAFAKPVHHSR 125

Query: 123 ----GVSYRSRT----TTQTSA----SKRGNRSSRNDGFYGHKEIKMMMMVGDSESHGVA 182
                   RSRT    TT TSA    +  G      DGF  H       M  D  S    
Sbjct: 126 FACSSPCKRSRTEKVATTTTSAVAEQAPYGFEVGGVDGFRWHTP----CMPRDLHSFNDP 185

Query: 183 LNQSAANHAFFKISQKMK-----------------------KEDEEKELSLCLCLQ---- 242
           L  +A   + F +  K++                       +  +  ELSL L LQ    
Sbjct: 186 LECAAKEESKFPLIAKLQDRMQMPRKGLKLTDWRSFPLEEYEVSQGCELSLSLSLQCHSI 245

Query: 243 HHCHGSS-SEISEAISSSSSKLDNINNNHNNNSYRDCSSWSYGRQQQQQISVNLELSMAL 252
           H  +GSS SEISEA SS S               R+CS          + SVNL+LS+AL
Sbjct: 246 HRSNGSSTSEISEAFSSCSRS-------------RECSG-----PCSDKSSVNLDLSIAL 286

[Close]
BLAST of CmaCh04G019490 vs. NCBI nr
Match: gi|590697251|ref|XP_007045387.1| (Homeodomain-like superfamily protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 157.5 bits (397), Expect = 3.0e-35
Identity = 124/320 (38.75%), Postives = 164/320 (51.25%), Query Frame = 1 

Query: 3   RNGSVRQYIRSKVPRLRWTPELHHCFVLAIQTLGGHHKATPKLVLQLMDVKGLTISHVKS 62
           R+G+VRQYIRSKVPRLRWTPELHHCFV AI+ LGG  KATPKLVLQLMDVKGLTISHVKS
Sbjct: 6   RSGAVRQYIRSKVPRLRWTPELHHCFVHAIERLGGQDKATPKLVLQLMDVKGLTISHVKS 65

Query: 63  HLQMYRSTRADMGRQDHKCSSVGRKASNFEEEDEDGCVEEEN------------------ 122
           HLQMYRS R+D+GRQD   SS  ++  +F  E+ DGCV+E +                  
Sbjct: 66  HLQMYRSMRSDLGRQDR--SSTHQRRQSF--ENHDGCVDEVSDLVFHSTSKPLEESDSHL 125

Query: 123 VKGGGVSYRSRTTTQTSASKRGNRSSRN-----DGFYGHKEIKMMMMV--GDSESHGVAL 182
           +     S R+R  T++S S +  + S+         Y   +    M V  G  E +G  +
Sbjct: 126 IYSPPPSKRARIETRSSISDQNLQCSQGICETVSNPYSFDDYLQTMAVHKGIKEGNGAFM 185

Query: 183 NQSAANHA---------------------------FFKISQKMKKE-------------- 242
            +   +H+                           F K+++   ++              
Sbjct: 186 WEHTQSHSQGQSTTFSLPYDIYNLNSFKYSMGEPDFLKVAKVEAEDHHTHVEQIVRRHAG 245

Query: 243 DEEK-----ELSLCLCLQHHCHGSSSEISEAISSSSSKLDNINNNHNNNSYRDCSSWSYG 252
           DEE+     ELSL L L HH     S  S     SSS+  ++   ++ +SY+DCS  S  
Sbjct: 246 DEEEAYGGCELSLSLSLHHHPSSQKSNTSSTSEISSSEAFSL---YSRSSYKDCSGTS-- 305

The following BLAST results are available for this feature:
BLAST of CmaCh04G019490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MYBF_ARATH1.8e-2738.72Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At... [more]
KAN1_ARATH2.0e-1546.15Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1[more]
KAN3_ARATH3.4e-1562.71Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1[more]
KAN2_ARATH1.0e-1449.41Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1[more]
KAN4_ARATH1.7e-1439.02Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1[more]
BLAST of CmaCh04G019490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSV1_CUCSA5.6e-7365.68Uncharacterized protein OS=Cucumis sativus GN=Csa_5G276460 PE=4 SV=1[more]
A0A059D699_EUCGR1.6e-3542.90Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02627 PE=4 SV=1[more]
A0A061EG23_THECC2.1e-3538.75Homeodomain-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=T... [more]
I1NFA5_SOYBN4.7e-3552.02Uncharacterized protein OS=Glycine max GN=GLYMA_20G108600 PE=4 SV=1[more]
A0A0B2PQX6_GLYSO8.0e-3552.02Putative Myb family transcription factor OS=Glycine soja GN=glysoja_015375 PE=4 ... [more]
BLAST of CmaCh04G019490 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14600.19.9e-2938.72 Homeodomain-like superfamily protein[more]
AT2G02060.11.3e-2537.83 Homeodomain-like superfamily protein[more]
AT2G40260.13.3e-2473.91 Homeodomain-like superfamily protein[more]
AT2G38300.16.9e-2268.66 myb-like HTH transcriptional regulator family protein[more]
AT2G42660.17.6e-2145.95 Homeodomain-like superfamily protein[more]
BLAST of CmaCh04G019490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120469|ref|XP_008460209.1|3.3e-7465.19PREDICTED: putative Myb family transcription factor At1g14600 isoform X2 [Cucumi... [more]
gi|778701853|ref|XP_011655099.1|8.1e-7365.68PREDICTED: putative Myb family transcription factor At1g14600 [Cucumis sativus][more]
gi|659120467|ref|XP_008460208.1|5.2e-7260.07PREDICTED: putative Myb family transcription factor At1g14600 isoform X1 [Cucumi... [more]
gi|702273416|ref|XP_010043897.1|2.3e-3542.90PREDICTED: uncharacterized protein LOC104432988 [Eucalyptus grandis][more]
gi|590697251|ref|XP_007045387.1|3.0e-3538.75Homeodomain-like superfamily protein, putative isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR006447Myb_dom_plants
IPR009057Homeobox-like_sf
IPR017930Myb_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019490.1CmaCh04G019490.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 17..68
score: 6.
IPR006447Myb domain, plantsTIGRFAMsTIGR01557TIGR01557coord: 16..69
score: 1.7
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 12..71
score: 1.3
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 14..70
score: 4.3
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 12..72
score: 10
NoneNo IPR availablePANTHERPTHR31314FAMILY NOT NAMEDcoord: 1..132
score: 8.7
NoneNo IPR availablePANTHERPTHR31314:SF10HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..132
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G019490Cla016935Watermelon (97103) v1cmawmB739
CmaCh04G019490ClCG11G000650Watermelon (Charleston Gray)cmawcgB622
CmaCh04G019490CmoCh04G020640Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G019490Lsi11G000450Bottle gourd (USVL1VR-Ls)cmalsiB635
CmaCh04G019490MELO3C022542.2Melon (DHL92) v3.6.1cmamedB737
CmaCh04G019490Cla97C11G206970Watermelon (97103) v2cmawmbB726
CmaCh04G019490CsGy5G009220Cucumber (Gy14) v2cgybcmaB670
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019490Cucurbita pepo (Zucchini)cmacpeB720