CmaCh04G019410 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G019410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA binding (RRM/RBD/RNP motifs) family protein
Location	Cma_Chr04 : 10585532 .. 10586123 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTACGTATGTTTCTCAATATATGTTTTTTTATTGGTGAATCGTTTTTTGCTGCTTGATATTTGAACTTGTATGTTTAAATCCATTTTGAAGGATCAAATGTTTGAATTGTCAATGTTTGAGCTTTGTAGGTTTGCTTTAGTGGTGTGGATTTGTGTGTGTGCTCGTCTCCAGTATTTTTGTAGGCATATGGATAACAGTTCTGTTGGGAACTCAGAAATGGTGACTGAAGCTGGATGGTATATTCTTGGTGAAGATCAGCAACATGTTGGTCCATATGCATTTTCTGAATTGCGTGGTCAGTTATAAGAACTGAACAGAACATTTCTGTATATATAGCTGATTGATATTGTTCCAAACATCACTTGTGGTTTTTTTGTTATTCGCGAGGGCAATATATGAGTGACATACAGGAATCGAAATGTACCTTGGTACCTCATGCCATGACAACTCTTACTTATATCTTGTGAACTGCCGGTTATTCCTCGAATTTACTTAAGTTCTTTCTTTCTTGAATTTCAGTTTTACAAGTATCAATAGCACGCTGTATCATGTTCACTTGGTTAAGAGCTATTGAAACATCTATTTAG

mRNA sequence

ATGCGTACGCATATGGATAACAGTTCTGTTGGGAACTCAGAAATGGTGACTGAAGCTGGATGGTATATTCTTGGTGAAGATCAGCAACATGTTGGTCCATATGCATTTTCTGAATTGCGTGTTTTACAAGTATCAATAGCACGCTGTATCATGTTCACTTGGTTAAGAGCTATTGAAACATCTATTTAG

Coding sequence (CDS)

ATGCGTACGCATATGGATAACAGTTCTGTTGGGAACTCAGAAATGGTGACTGAAGCTGGATGGTATATTCTTGGTGAAGATCAGCAACATGTTGGTCCATATGCATTTTCTGAATTGCGTGTTTTACAAGTATCAATAGCACGCTGTATCATGTTCACTTGGTTAAGAGCTATTGAAACATCTATTTAG

Protein sequence

MRTHMDNSSVGNSEMVTEAGWYILGEDQQHVGPYAFSELRVLQVSIARCIMFTWLRAIETSI

Homology

[Close]

BLAST of CmaCh04G019410 vs. TrEMBL
Match: A0A0A0KZ32_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G491190 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.5e-11
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 5  MDNSSVGNSEMVTEAGWYILGEDQQHVGPYAFSELR 41
          MDN+SVGN EMVTEAGWYILGE+QQHVGPYAFSELR
Sbjct: 3  MDNNSVGNLEMVTEAGWYILGENQQHVGPYAFSELR 38

[Close]

BLAST of CmaCh04G019410 vs. TAIR10
Match: AT5G16260.1 (AT5G16260.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 48.5 bits (114), Expect = 1.7e-06
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1


Query: 8  SSVGNSEMVTEAGWYILGEDQQHVGPYAFSEL 40
          SS G +   T+ GWYILGE+QQ++GPY FSEL
Sbjct: 12 SSTGATVAATDVGWYILGENQQNLGPYTFSEL 43

[Close]

BLAST of CmaCh04G019410 vs. NCBI nr
Match: gi|659083059|ref|XP_008442163.1| (PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-11
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 1


Query: 5  MDNSSVGNSEMVTEAGWYILGEDQQHVGPYAFSELR 41
          MDN+SVGNSEMVTEAGWYILGE+QQHVGPYAFSELR
Sbjct: 1  MDNNSVGNSEMVTEAGWYILGENQQHVGPYAFSELR 36

[Close]

BLAST of CmaCh04G019410 vs. NCBI nr
Match: gi|778694873|ref|XP_011653887.1| (PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 5  MDNSSVGNSEMVTEAGWYILGEDQQHVGPYAFSELR 41
          MDN+SVGN EMVTEAGWYILGE+QQHVGPYAFSELR
Sbjct: 1  MDNNSVGNLEMVTEAGWYILGENQQHVGPYAFSELR 36

[Close]

BLAST of CmaCh04G019410 vs. NCBI nr
Match: gi|700199615|gb|KGN54773.1| (hypothetical protein Csa_4G491190 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1


Query: 5  MDNSSVGNSEMVTEAGWYILGEDQQHVGPYAFSELR 41
          MDN+SVGN EMVTEAGWYILGE+QQHVGPYAFSELR
Sbjct: 3  MDNNSVGNLEMVTEAGWYILGENQQHVGPYAFSELR 38

The following BLAST results are available for this feature:

BLAST of CmaCh04G019410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G019410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ32_CUCSA	7.5e-11	91.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G491190 PE=4 SV=1	[more]

BLAST of CmaCh04G019410 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16260.1	1.7e-06	62.50	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmaCh04G019410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083059\|ref\|XP_008442163.1\|	2.2e-11	94.44	PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Cucumis melo]	[more]
gi\|778694873\|ref\|XP_011653887.1\|	1.1e-10	91.67	PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis sativus]	[more]
gi\|700199615\|gb\|KGN54773.1\|	1.1e-10	91.67	hypothetical protein Csa_4G491190 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016458	gene silencing
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0040029	regulation of gene expression, epigenetic
cellular_component	GO:0044424	intracellular part
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019410.1	CmaCh04G019410.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G019410	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G019410	Bottle gourd (USVL1VR-Ls)	cmalsiB635
CmaCh04G019410	Cucumber (Gy14) v2	cgybcmaB670
CmaCh04G019410	Melon (DHL92) v3.6.1	cmamedB737
CmaCh04G019410	Silver-seed gourd	carcmaB1020
CmaCh04G019410	Watermelon (97103) v2	cmawmbB726
CmaCh04G019410	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G019410	Watermelon (Charleston Gray)	cmawcgB622
CmaCh04G019410	Watermelon (97103) v1	cmawmB739