CmaCh04G019180 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G019180
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Location	Cma_Chr04 : 10254016 .. 10254921 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATGCTTCCTCTGGATCCGACGACTTACGCACCTTCGAAGAACAAGCCGATACAAGATCGATAACAAACCGACGCCGACCCACCGACGAATCCATTGAATACAAATCGAAAAACCTCCATGCAGAGAGACGACGGAGGCAGAAGCTAAGCGATAGGCTACTATTACTACGTGCCACTGTTCCAATCATCACAAATGCAACGTCCCACAACTCTCCTCATTAATTCAATTCATTTGTTACGCATCGTTTCATAACCATTTTGTTTTGTTGTCTCATAAATATAGATGAATAAAGCGACGATTATTGAGGATGCTATAACGTACATCAAGCAGCTGCAGAAGAGGGTTAATATTCTAAAAGACCAGCTTGTGGAATTGGAAGGCTCAGCGGAAAAAACTCCATGGCCAACAGTACCAACAGATAGTACAACCCCGACGCAATCGAATAAAAGTTATATTCAGGCAGACGTGAGCGTTTCTCAAATCGACGAACACAAACTATGGATTAAAATACTTTTTGAGAAGCGAAAAGGTGCATTCACTAAATTAATTCAAGCCATGAATTCTGTGGGGTTTGAGCTCACTGACACTAGTGTCACAACCGTACAAGGAGCTGTTCTTGTGACCACCCTTATCAATGTAAGTGCTTGCTTCCAACAACAATTCTTAAATTTTACAAATTTTTAAATCTTTGTGTTCTTAATTTATATGGTGGTTTGGGTGGAAGGACTAATTATGATTTGGATATTTCATTGAATAGGGAATTTTTTGTACGTCAACAGCGCAGCAAACTGAGGACTTGCTGCTGGGTATCGTTAATACATGCATTTGAGATATTGATACTCATTCAGCTAACTTTTAATATAATTTAGGATACACATATATTCAACACAATAGTTTAG

mRNA sequence

ATGGCTTATGCTTCCTCTGGATCCGACGACTTACGCACCTTCGAAGAACAAGCCGATACAAGATCGATAACAAACCGACGCCGACCCACCGACGAATCCATTGAATACAAATCGAAAAACCTCCATGCAGAGAGACGACGGAGGCAGAAGCTAAGCGATAGGCTACTATTACTACGTGCCACTGTTCCAATCATCACAAATATGAATAAAGCGACGATTATTGAGGATGCTATAACGTACATCAAGCAGCTGCAGAAGAGGGTTAATATTCTAAAAGACCAGCTTGTGGAATTGGAAGGCTCAGCGGAAAAAACTCCATGGCCAACAGTACCAACAGATAGTACAACCCCGACGCAATCGAATAAAAGTTATATTCAGGCAGACGTGAGCGTTTCTCAAATCGACGAACACAAACTATGGATTAAAATACTTTTTGAGAAGCGAAAAGGTGCATTCACTAAATTAATTCAAGCCATGAATTCTGTGGGGTTTGAGCTCACTGACACTAGTGTCACAACCGTACAAGGAGCTGTTCTTGTGACCACCCTTATCAATGGAATTTTTTGTACGTCAACAGCGCAGCAAACTGAGGACTTGCTGCTGGGTATCGTTAATACATGCATTTGAGATATTGATACTCATTCAGCTAACTTTTAATATAATTTAGGATACACATATATTCAACACAATAGTTTAG

Coding sequence (CDS)

ATGGCTTATGCTTCCTCTGGATCCGACGACTTACGCACCTTCGAAGAACAAGCCGATACAAGATCGATAACAAACCGACGCCGACCCACCGACGAATCCATTGAATACAAATCGAAAAACCTCCATGCAGAGAGACGACGGAGGCAGAAGCTAAGCGATAGGCTACTATTACTACGTGCCACTGTTCCAATCATCACAAATATGAATAAAGCGACGATTATTGAGGATGCTATAACGTACATCAAGCAGCTGCAGAAGAGGGTTAATATTCTAAAAGACCAGCTTGTGGAATTGGAAGGCTCAGCGGAAAAAACTCCATGGCCAACAGTACCAACAGATAGTACAACCCCGACGCAATCGAATAAAAGTTATATTCAGGCAGACGTGAGCGTTTCTCAAATCGACGAACACAAACTATGGATTAAAATACTTTTTGAGAAGCGAAAAGGTGCATTCACTAAATTAATTCAAGCCATGAATTCTGTGGGGTTTGAGCTCACTGACACTAGTGTCACAACCGTACAAGGAGCTGTTCTTGTGACCACCCTTATCAATGGAATTTTTTGTACGTCAACAGCGCAGCAAACTGAGGACTTGCTGCTGGGTATCGTTAATACATGCATTTGA

Protein sequence

MAYASSGSDDLRTFEEQADTRSITNRRRPTDESIEYKSKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQSNKSYIQADVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLVTTLINGIFCTSTAQQTEDLLLGIVNTCI

Homology

[Close]

BLAST of CmaCh04G019180 vs. Swiss-Prot
Match: DYT1_ARATH (Transcription factor DYT1 OS=Arabidopsis thaliana GN=DYT1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.2e-25
Identity = 78/195 (40.00%), Postives = 117/195 (60.00%), Query Frame = 1


Query: 23  ITNRRRPTDESIE---YKSKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAIT 82
           ++ R++ T E  E   +KS NL AERRRR+KL  RL+ LR+ VPI+TNM KA+I+EDAIT
Sbjct: 13  MSRRKQVTKEKEEDENFKSPNLEAERRRREKLHCRLMALRSHVPIVTNMTKASIVEDAIT 72

Query: 83  YIKQLQKRVNILKDQLVELEGSA----EKTPWPTVPTDSTTP---TQSNKSYIQADVSVS 142
           YI +LQ  V  L +   E+E +     E+   P +  +  T     +  K  I+ +V + 
Sbjct: 73  YIGELQNNVKNLLETFHEMEEAPPEIDEEQTDPMIKPEVETSDLNEEMKKLGIEENVQLC 132

Query: 143 QIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLVTTLI-NGIFCTS 202
           +I E K W+KI+ EKR G FTK ++ M  +GFE+ D S+TT  GA+L++  +     C  
Sbjct: 133 KIGERKFWLKIITEKRDGIFTKFMEVMRFLGFEIIDISLTTSNGAILISASVQTQELC-- 192

Query: 203 TAQQTEDLLLGIVNT 207
             +QT+D LL ++ +
Sbjct: 193 DVEQTKDFLLEVMRS 205

[Close]

BLAST of CmaCh04G019180 vs. Swiss-Prot
Match: AMS_ARATH (Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-16
Identity = 54/162 (33.33%), Postives = 91/162 (56.17%), Query Frame = 1


Query: 37  KSKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLV 96
           ++KNL AERRRR+KL+DRL  LR+ VP IT +++A+I+ DAI Y+K+LQ     L+D+L 
Sbjct: 312 QAKNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELE 371

Query: 97  E----------------LEGSAEKTPWPTVPTDSTTP----------TQSNKSYIQADVS 156
           E                L G+      P +  +S  P          +      ++  V 
Sbjct: 372 ENSETEDGSNRPQGGMSLNGTVVTGFHPGLSCNSNVPSVKQDVDLENSNDKGQEMEPQVD 431

Query: 157 VSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVT 173
           V+Q+D  + ++K++ E + G FT+L++A++S+G E+T+ + T
Sbjct: 432 VAQLDGREFFVKVICEYKPGGFTRLMEALDSLGLEVTNANTT 473

[Close]

BLAST of CmaCh04G019180 vs. Swiss-Prot
Match: UDT1_ORYSJ (Transcription factor UDT1 OS=Oryza sativa subsp. japonica GN=UDT1 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 1


Query: 35  EYKSKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAITYIKQLQKRVNILKDQ 94
           E+KSKNL AERRRR +L+  +  LRA VP IT M+K   + DAI +IK LQ  V  L+ Q
Sbjct: 61  EFKSKNLEAERRRRGRLNGNIFALRAVVPKITKMSKEATLSDAIEHIKNLQNEVLELQRQ 120

Query: 95  LVELEGSAEKTPWPTVPTDSTTPTQSNKSYIQADVSVSQIDEHKLWIKILFEKRKGAFTK 154
           L +  G A +       ++S  PT++  ++ Q  V +  +   K  +KI + KR G FTK
Sbjct: 121 LGDSPGEAWEKQCSASCSESFVPTEN--AHYQGQVELISLGSCKYNLKIFWTKRAGLFTK 180

Query: 155 LIQAMNSVGFELTDTSVTTVQG 177
           +++A+ S   ++   +  +  G
Sbjct: 181 VLEALCSYKVQVLSLNTISFYG 200

[Close]

BLAST of CmaCh04G019180 vs. Swiss-Prot
Match: TDR_ORYSJ (Transcription factor TDR OS=Oryza sativa subsp. japonica GN=TDR PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.9e-13
Identity = 58/184 (31.52%), Postives = 92/184 (50.00%), Query Frame = 1


Query: 39  KNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAITYIKQLQKRVNILKDQ---- 98
           KNL AER+RR+KL+  L  LR+ VP IT M++A+I+ DAI YI  LQK+V  L+D+    
Sbjct: 285 KNLEAERKRRKKLNGHLYKLRSLVPNITKMDRASILGDAIDYIVGLQKQVKELQDELEDN 344

Query: 99  ------------------LVELEGSAEKTP-----WPTVPTDSTTPTQSNKSYIQAD--- 158
                             LV L+      P      P +    ++  +SNK     D   
Sbjct: 345 HVHHKPPDVLIDHPPPASLVGLDNDDASPPNSHQQQPPLAVSGSSSRRSNKDPAMTDDKV 404

Query: 159 -------------VSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQ 180
                        + V Q+  ++L++++L+E + G F +L+ AMN++G E+ + +VTT +
Sbjct: 405 GGGGGGGHRMEPQLEVRQVQGNELFVQVLWEHKPGGFVRLMDAMNALGLEVINVNVTTYK 464

[Close]

BLAST of CmaCh04G019180 vs. Swiss-Prot
Match: BH035_ARATH (Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.7e-10
Identity = 52/160 (32.50%), Postives = 86/160 (53.75%), Query Frame = 1


Query: 38  SKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLVE 97
           SKN+ +ER RRQKL+ RL  LR+ VP IT M+KA+II+DAI+YI+ LQ     L+ ++ E
Sbjct: 54  SKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRE 113

Query: 98  LEGSAEKTPWPT--------VPTDSTTPTQ----SNKSYIQA-DVSVSQIDEHKLWIKIL 157
           LE + + +   +        VP  S    Q    S+ S I+  ++ V+ + E  + + + 
Sbjct: 114 LESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSVT 173

Query: 158 FEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLVTTLI 185
             KR     KL +   S+  ++  +++T+  G +  T  I
Sbjct: 174 CNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFI 213

[Close]

BLAST of CmaCh04G019180 vs. TrEMBL
Match: M5WJT8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021593mg PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.2e-40
Identity = 95/150 (63.33%), Postives = 118/150 (78.67%), Query Frame = 1


Query: 35  EYKSKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAITYIKQLQKRVNILKDQ 94
           EYKSKNLHAERRRRQKLS+RLL LRA VP ITNMNKATI+EDAITYI +LQK VNILKDQ
Sbjct: 11  EYKSKNLHAERRRRQKLSERLLTLRALVPNITNMNKATIVEDAITYIHELQKTVNILKDQ 70

Query: 95  LVELEGSAEKTPWPTVPTDSTTPTQSNKSYIQADVSVSQIDEHKLWIKILFEKRKGAFTK 154
           L ++E S E+ P P    +  +  +  K  IQA V+V+QID +KLW+K + EK++G FTK
Sbjct: 71  LFDMEASEEEAPEPK-KEEIHSAEEMKKFGIQAGVNVTQIDGNKLWVKAILEKKRGGFTK 130

Query: 155 LIQAMNSVGFELTDTSVTTVQGAVLVTTLI 185
           L++AM + GFELTDTSVTT  GA+LV++ +
Sbjct: 131 LMEAMTAFGFELTDTSVTTSNGAMLVSSCV 159

[Close]

BLAST of CmaCh04G019180 vs. TrEMBL
Match: A5BG38_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006000 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.2e-40
Identity = 107/205 (52.20%), Postives = 134/205 (65.37%), Query Frame = 1


Query: 1   MAYASSGSDDLRTFEEQADTRSITNRRRPTDESIEYKSKNLHAERRRRQKLSDRLLLLRA 60
           M YA    D     E     R    R R   +  EYKSKNL AERRRRQKLSDRLL LRA
Sbjct: 1   MEYADCAPDGSCVSEGGGSGRG---RMRMRGQEREYKSKNLQAERRRRQKLSDRLLALRA 60

Query: 61  TVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQS 120
            VPIITNMNKATIIEDAITYIK+LQK V  L DQL+E+E S+E+       T      + 
Sbjct: 61  LVPIITNMNKATIIEDAITYIKELQKNVKDLSDQLLEMEASSEEEAKQRSETIDAA-EEM 120

Query: 121 NKSYIQADVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLV 180
           NK  I+ DV V+ ID +K W+KI+ +K++ +FTKL++AMN +GFE TDTSVTT +GA+L+
Sbjct: 121 NKCGIEEDVKVTNIDGNKFWLKIVIQKKRSSFTKLVEAMNFLGFEFTDTSVTTSKGAILI 180

Query: 181 TTLINGIFCTS-TAQQTEDLLLGIV 205
           T  + GI+     A +T +LL  I+
Sbjct: 181 TACVEGIYGEXFAAAETRELLQEII 201

[Close]

BLAST of CmaCh04G019180 vs. TrEMBL
Match: B9RXW8_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_0906780 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-39
Identity = 104/208 (50.00%), Postives = 142/208 (68.27%), Query Frame = 1


Query: 1   MAYASSGSDDLRTFEEQADTRSITNRRRPTDESIEYKSKNLHAERRRRQKLSDRLLLLRA 60
           M +     DDL   +E      +  R    D++ EYKSKNL AERRRR+KLS+RLL LRA
Sbjct: 1   MEFVVPAMDDLCIAQEGGRRGRLGQRTVDYDDTKEYKSKNLGAERRRRKKLSERLLALRA 60

Query: 61  TVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQS 120
           +VPIITNMNKATIIEDAITYI++LQK V  L DQL+E++  +E+       +D   P + 
Sbjct: 61  SVPIITNMNKATIIEDAITYIQELQKHVKHLSDQLLEMDELSEEA--VKTRSDEFDPAEE 120

Query: 121 NKSY-IQADVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVL 180
            K   I  DV V+ +DE KLWIKI+ EK++G FT+LI+A++ +G ELT+T+VTT +GA+L
Sbjct: 121 MKQCGIMEDVQVTYVDETKLWIKIILEKKRGRFTRLIEALSYLGLELTETTVTTYRGAML 180

Query: 181 VTTLINGIF-CTSTAQQTEDLLLGIVNT 207
           V++ + G +  T T QQT++ LL I+ T
Sbjct: 181 VSSFVEGAYGDTLTVQQTKEYLLEIIRT 206

[Close]

BLAST of CmaCh04G019180 vs. TrEMBL
Match: A0A067JLF3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21306 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.0e-36
Identity = 95/185 (51.35%), Postives = 126/185 (68.11%), Query Frame = 1


Query: 1   MAYASSGSDDLRTFEEQADTRSITNRRRPTDESIEYKSKNLHAERRRRQKLSDRLLLLRA 60
           M + SS   +L    E +    +  RR   D++ E+KSKNLHAERRRRQKLSDRLL LRA
Sbjct: 1   MEFVSSAMKELCIPRESSGRGRLGRRRGDYDDTGEFKSKNLHAERRRRQKLSDRLLALRA 60

Query: 61  TVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQS 120
            VPIITNMNKATIIEDAITYI++LQ  V  L DQL+E++ S+E+     +  D       
Sbjct: 61  IVPIITNMNKATIIEDAITYIQELQNNVEFLSDQLLEMDASSEEEIKAKI--DEIDSAGE 120

Query: 121 NKSY-IQADVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVL 180
            K Y I  +V V+ ID +KLWIKI+ EK++G F +L++ M  +G ELTDT+VTT +GA+L
Sbjct: 121 MKQYGIMEEVQVTNIDGNKLWIKIILEKKRGRFCRLLENMTYLGLELTDTNVTTTKGAIL 180

Query: 181 VTTLI 185
           V++ +
Sbjct: 181 VSSCV 183

[Close]

BLAST of CmaCh04G019180 vs. TrEMBL
Match: A0A0D2VH36_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G019900 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.9e-36
Identity = 91/171 (53.22%), Postives = 125/171 (73.10%), Query Frame = 1


Query: 31  DESIEYKSKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAITYIKQLQKRVNI 90
           + S E+KSKNL AERRRRQKLSDRLL LR+ VPIITNMNKATII+DAITYI++LQK   +
Sbjct: 13  NNSKEFKSKNLQAERRRRQKLSDRLLTLRSLVPIITNMNKATIIDDAITYIQELQKTSQV 72

Query: 91  LKDQLVELEGSAEKTPWPTVPTDSTTPTQSNKSYIQADVSVSQIDEHKLWIKILFEKRKG 150
           L +QL+E+EGS+E++  P     +       K  I+ +V VS ID +K  IKI+ EK++G
Sbjct: 73  LSEQLLEMEGSSEESVMPMKLEIAVAQHDMKKCGIKEEVKVSNIDGNKFLIKIIVEKKRG 132

Query: 151 AFTKLIQAMNSVGFELTDTSVTTVQGAVLVTTLINGIF-CTSTAQQTEDLL 201
            FT+LI+AMN +GFEL++T+VTT  GA+L ++ ++G +  T   +  E+LL
Sbjct: 133 CFTQLIEAMNYLGFELSETNVTTFSGAMLFSSCVHGKYGDTLMVEHIEELL 183

[Close]

BLAST of CmaCh04G019180 vs. TAIR10
Match: AT4G21330.1 (AT4G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 2.9e-26
Identity = 78/195 (40.00%), Postives = 117/195 (60.00%), Query Frame = 1


Query: 23  ITNRRRPTDESIE---YKSKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAIT 82
           ++ R++ T E  E   +KS NL AERRRR+KL  RL+ LR+ VPI+TNM KA+I+EDAIT
Sbjct: 13  MSRRKQVTKEKEEDENFKSPNLEAERRRREKLHCRLMALRSHVPIVTNMTKASIVEDAIT 72

Query: 83  YIKQLQKRVNILKDQLVELEGSA----EKTPWPTVPTDSTTP---TQSNKSYIQADVSVS 142
           YI +LQ  V  L +   E+E +     E+   P +  +  T     +  K  I+ +V + 
Sbjct: 73  YIGELQNNVKNLLETFHEMEEAPPEIDEEQTDPMIKPEVETSDLNEEMKKLGIEENVQLC 132

Query: 143 QIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLVTTLI-NGIFCTS 202
           +I E K W+KI+ EKR G FTK ++ M  +GFE+ D S+TT  GA+L++  +     C  
Sbjct: 133 KIGERKFWLKIITEKRDGIFTKFMEVMRFLGFEIIDISLTTSNGAILISASVQTQELC-- 192

Query: 203 TAQQTEDLLLGIVNT 207
             +QT+D LL ++ +
Sbjct: 193 DVEQTKDFLLEVMRS 205

[Close]

BLAST of CmaCh04G019180 vs. TAIR10
Match: AT2G16910.1 (AT2G16910.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 4.2e-17
Identity = 54/162 (33.33%), Postives = 91/162 (56.17%), Query Frame = 1


Query: 37  KSKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLV 96
           ++KNL AERRRR+KL+DRL  LR+ VP IT +++A+I+ DAI Y+K+LQ     L+D+L 
Sbjct: 312 QAKNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELE 371

Query: 97  E----------------LEGSAEKTPWPTVPTDSTTP----------TQSNKSYIQADVS 156
           E                L G+      P +  +S  P          +      ++  V 
Sbjct: 372 ENSETEDGSNRPQGGMSLNGTVVTGFHPGLSCNSNVPSVKQDVDLENSNDKGQEMEPQVD 431

Query: 157 VSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVT 173
           V+Q+D  + ++K++ E + G FT+L++A++S+G E+T+ + T
Sbjct: 432 VAQLDGREFFVKVICEYKPGGFTRLMEALDSLGLEVTNANTT 473

[Close]

BLAST of CmaCh04G019180 vs. TAIR10
Match: AT5G57150.4 (AT5G57150.4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-11
Identity = 52/160 (32.50%), Postives = 86/160 (53.75%), Query Frame = 1


Query: 38  SKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLVE 97
           SKN+ +ER RRQKL+ RL  LR+ VP IT M+KA+II+DAI+YI+ LQ     L+ ++ E
Sbjct: 54  SKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRE 113

Query: 98  LEGSAEKTPWPT--------VPTDSTTPTQ----SNKSYIQA-DVSVSQIDEHKLWIKIL 157
           LE + + +   +        VP  S    Q    S+ S I+  ++ V+ + E  + + + 
Sbjct: 114 LESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSVT 173

Query: 158 FEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLVTTLI 185
             KR     KL +   S+  ++  +++T+  G +  T  I
Sbjct: 174 CNKRTDTMVKLCEVFESLNLKILTSNLTSFSGMIFHTVFI 213

[Close]

BLAST of CmaCh04G019180 vs. TAIR10
Match: AT2G28160.1 (AT2G28160.1 FER-like regulator of iron uptake)

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-11
Identity = 56/214 (26.17%), Postives = 109/214 (50.93%), Query Frame = 1


Query: 5   SSGSDDLRTFEEQADTRSITNRRRPTDESIEYKSKNLHAERRRRQKLSDRLLLLRATVPI 64
           + G +D   + +  D+ + T     T ++   +S+ L +ERRRR ++ D+L  LR+ VP 
Sbjct: 97  AGGEEDEEDYNDGDDSSATTTNNDGTRKTKTDRSRTLISERRRRGRMKDKLYALRSLVPN 156

Query: 65  ITNMNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQ----- 124
           IT M+KA+I+ DA+ Y+++LQ +   LK  +  LE S   T            TQ     
Sbjct: 157 ITKMDKASIVGDAVLYVQELQSQAKKLKSDIAGLEASLNSTGGYQEHAPDAQKTQPFRGI 216

Query: 125 ---SNKSYIQADVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSV-GFELTDTSVTTVQ 184
              ++K  IQ D  V Q++E   +++++  K +G    L +++ S+  F++ ++++++  
Sbjct: 217 NPPASKKIIQMD--VIQVEEKGFYVRLVCNKGEGVAPSLYKSLESLTSFQVQNSNLSSPS 276

Query: 185 -GAVLVTTLINGIFCTSTAQQTEDLLLGIVNTCI 209
               L+T  ++G  C   +    +L L I  + +
Sbjct: 277 PDTYLLTYTLDGT-CFEQSLNLPNLKLWITGSLL 307

[Close]

BLAST of CmaCh04G019180 vs. TAIR10
Match: AT3G26744.1 (AT3G26744.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 7.7e-11
Identity = 55/184 (29.89%), Postives = 93/184 (50.54%), Query Frame = 1


Query: 38  SKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLVE 97
           +KNL AERRRR+KL+DRL +LR+ VP I+ M++A+I+ DAI Y+K+L +R+N L ++L  
Sbjct: 306 AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNEL-- 365

Query: 98  LEGSAEKTPWPTVPTDST-----TPTQSNKSY----------------IQADVSVSQIDE 157
                E TP  ++P  S+     TPT    S                  QA V V   + 
Sbjct: 366 -----ESTPPGSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREG 425

Query: 158 HKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLVTTLINGIFCTSTAQQT 201
             + I +   +R G     ++A++++G ++    ++   G  L       +F     Q+ 
Sbjct: 426 RAVNIHMFCGRRPGLLLATMKALDNLGLDVQQAVISCFNGFAL------DVFRAEQCQEG 476

[Close]

BLAST of CmaCh04G019180 vs. NCBI nr
Match: gi|645237013|ref|XP_008225011.1| (PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1 [Prunus mume])

HSP 1 Score: 183.3 bits (464), Expect = 4.2e-43
Identity = 109/207 (52.66%), Postives = 146/207 (70.53%), Query Frame = 1


Query: 1   MAYASSGSDDLRTFEEQADTRSITNRRRPTDESIEYKSKNLHAERRRRQKLSDRLLLLRA 60
           M + +S  D+L   E+      + +R    D+  EYKSKNLHAERRRRQKLS+RLL LRA
Sbjct: 1   MEFVASSLDELCITEQGKRGGRMGHRSHNNDD--EYKSKNLHAERRRRQKLSERLLTLRA 60

Query: 61  TVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQS 120
            VP ITNMNKATI+EDAITYI +LQK VNILKDQL ++E S E+ P      +     + 
Sbjct: 61  LVPNITNMNKATIVEDAITYIHELQKTVNILKDQLFDMEASEEEAP-EQKKEEIQAAEEM 120

Query: 121 NKSYIQADVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLV 180
            K  IQA+V+V+QI  +KLW+K + EK++G FTKL++AM + GFELTDTSVTT  GA+LV
Sbjct: 121 KKFGIQAEVNVTQIGGNKLWVKAILEKKRGGFTKLMEAMTAFGFELTDTSVTTSNGAMLV 180

Query: 181 TTLINGIFC-TSTAQQTEDLLLGIVNT 207
           ++ + G +C T   +QT++L+L I+N+
Sbjct: 181 SSCVMGSYCETLEVEQTKELMLEIINS 204

[Close]

BLAST of CmaCh04G019180 vs. NCBI nr
Match: gi|764553007|ref|XP_011460361.1| (PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 176.8 bits (447), Expect = 3.9e-41
Identity = 112/214 (52.34%), Postives = 145/214 (67.76%), Query Frame = 1


Query: 1   MAYASSGSDDLRTFEEQADTRSITNR--RRPTDESIE----YKSKNLHAERRRRQKLSDR 60
           M +  S  D+L    +Q +  S   R  RR  ++ ++    YKSKNL+AER+RR KLSDR
Sbjct: 1   MEFVGSPLDELYLSPDQLEDNSRGGRMGRRRYNDVVDGPPIYKSKNLNAERKRRAKLSDR 60

Query: 61  LLLLRATVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLVELEG-SAEKTPWPTVPTD 120
           LL LR+ VPIITNMNKATI++DAITYI +LQK VN+L++QL E+E  S+ + P P     
Sbjct: 61  LLKLRSLVPIITNMNKATIVDDAITYIYELQKEVNMLQEQLFEMEALSSLEVPEPKPRKK 120

Query: 121 STTPTQS-NKSYIQADVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVT 180
            T   +   KS IQADVSV+QID  KLWIK +F K++G FTKLI+AM   GFEL DTSVT
Sbjct: 121 ETDAAEEMKKSGIQADVSVTQIDGDKLWIKAVFAKKRGGFTKLIEAMTEFGFELNDTSVT 180

Query: 181 TVQGAVLVTTLINGIFC-TSTAQQTEDLLLGIVN 206
           T  GA+LV++ + G  C T   QQT +L+L I+N
Sbjct: 181 TSNGAMLVSSWVTGFHCDTLPVQQTRELMLDIIN 214

[Close]

BLAST of CmaCh04G019180 vs. NCBI nr
Match: gi|359496236|ref|XP_003635187.1| (PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Vitis vinifera])

HSP 1 Score: 175.6 bits (444), Expect = 8.8e-41
Identity = 102/180 (56.67%), Postives = 129/180 (71.67%), Query Frame = 1


Query: 26  RRRPTDESIEYKSKNLHAERRRRQKLSDRLLLLRATVPIITNMNKATIIEDAITYIKQLQ 85
           R R   +  EYKSKNL AERRRRQKLSDRLL LRA VPIITNMNKATIIEDAITYIK+LQ
Sbjct: 23  RMRMRGQEREYKSKNLQAERRRRQKLSDRLLALRALVPIITNMNKATIIEDAITYIKELQ 82

Query: 86  KRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQSNKSYIQADVSVSQIDEHKLWIKILF 145
           K V  L DQL+E+E S+E+       T      + NK  I+ DV V+ ID +K W+KI+ 
Sbjct: 83  KNVKDLSDQLLEMEASSEEEAKQRSETIDAA-EEMNKCGIEEDVEVTNIDGNKFWLKIVI 142

Query: 146 EKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLVTTLINGIFC-TSTAQQTEDLLLGIV 205
           +K++ +FTKL++AMN +GFE TDTSVTT +GA+L+T  + GI+  T  A +T +LL  I+
Sbjct: 143 QKKRSSFTKLVEAMNFLGFEFTDTSVTTSKGAILITACVEGIYGETFAAAETRELLQEII 201

[Close]

BLAST of CmaCh04G019180 vs. NCBI nr
Match: gi|802795047|ref|XP_012092393.1| (PREDICTED: transcription factor DYT1 [Jatropha curcas])

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 106/206 (51.46%), Postives = 140/206 (67.96%), Query Frame = 1


Query: 1   MAYASSGSDDLRTFEEQADTRSITNRRRPTDESIEYKSKNLHAERRRRQKLSDRLLLLRA 60
           M + SS   +L    E +    +  RR   D++ E+KSKNLHAERRRRQKLSDRLL LRA
Sbjct: 1   MEFVSSAMKELCIPRESSGRGRLGRRRGDYDDTGEFKSKNLHAERRRRQKLSDRLLALRA 60

Query: 61  TVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQS 120
            VPIITNMNKATIIEDAITYI++LQ  V  L DQL+E++ S+E+     +  D       
Sbjct: 61  IVPIITNMNKATIIEDAITYIQELQNNVEFLSDQLLEMDASSEEEIKAKI--DEIDSAGE 120

Query: 121 NKSY-IQADVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVL 180
            K Y I  +V V+ ID +KLWIKI+ EK++G F +L++ M  +G ELTDT+VTT +GA+L
Sbjct: 121 MKQYGIMEEVQVTNIDGNKLWIKIILEKKRGRFCRLLENMTYLGLELTDTNVTTTKGAIL 180

Query: 181 VTTLINGIF-CTSTAQQTEDLLLGIV 205
           V++ + G +  T T QQT+DLLL I+
Sbjct: 181 VSSCVEGTYGDTLTVQQTKDLLLEII 204

[Close]

BLAST of CmaCh04G019180 vs. NCBI nr
Match: gi|359496224|ref|XP_003635181.1| (PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Vitis vinifera])

HSP 1 Score: 173.3 bits (438), Expect = 4.4e-40
Identity = 107/205 (52.20%), Postives = 135/205 (65.85%), Query Frame = 1


Query: 1   MAYASSGSDDLRTFEEQADTRSITNRRRPTDESIEYKSKNLHAERRRRQKLSDRLLLLRA 60
           M YA    D     E     R    R R   +  EYKSKNL AERRRRQKLSDRLL LRA
Sbjct: 1   MEYADCAPDGSCVSEGGGSGRG---RMRMRGQEREYKSKNLQAERRRRQKLSDRLLALRA 60

Query: 61  TVPIITNMNKATIIEDAITYIKQLQKRVNILKDQLVELEGSAEKTPWPTVPTDSTTPTQS 120
            VPIITNMNKATIIEDAITYIK+LQK V  L DQL+E+E S+E+       T      + 
Sbjct: 61  LVPIITNMNKATIIEDAITYIKELQKNVKDLSDQLLEMEASSEEEAKQRSETIDAA-EEM 120

Query: 121 NKSYIQADVSVSQIDEHKLWIKILFEKRKGAFTKLIQAMNSVGFELTDTSVTTVQGAVLV 180
           NK  I+ DV V+ ID +K W+KI+ +K++ +FTKL++AMN +GFE TDTSVTT +GA+L+
Sbjct: 121 NKCGIEEDVKVTNIDGNKFWLKIVIQKKRSSFTKLVEAMNFLGFEFTDTSVTTSKGAILI 180

Query: 181 TTLINGIFCTS-TAQQTEDLLLGIV 205
           T  + GI+  +  A +T +LL  I+
Sbjct: 181 TACVEGIYGENFAAAETRELLQEII 201

The following BLAST results are available for this feature:

BLAST of CmaCh04G019180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DYT1_ARATH	5.2e-25	40.00	Transcription factor DYT1 OS=Arabidopsis thaliana GN=DYT1 PE=2 SV=1	[more]
AMS_ARATH	7.5e-16	33.33	Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=...	[more]
UDT1_ORYSJ	1.2e-13	36.62	Transcription factor UDT1 OS=Oryza sativa subsp. japonica GN=UDT1 PE=2 SV=2	[more]
TDR_ORYSJ	5.9e-13	31.52	Transcription factor TDR OS=Oryza sativa subsp. japonica GN=TDR PE=1 SV=1	[more]
BH035_ARATH	4.7e-10	32.50	Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1	[more]

BLAST of CmaCh04G019180 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WJT8_PRUPE	5.2e-40	63.33	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021593mg PE=4 S...	[more]
A5BG38_VITVI	5.2e-40	52.20	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006000 PE=4 SV=1	[more]
B9RXW8_RICCO	2.6e-39	50.00	DNA binding protein, putative OS=Ricinus communis GN=RCOM_0906780 PE=4 SV=1	[more]
A0A067JLF3_JATCU	2.0e-36	51.35	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21306 PE=4 SV=1	[more]
A0A0D2VH36_GOSRA	5.9e-36	53.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G019900 PE=4 SV=1	[more]

BLAST of CmaCh04G019180 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21330.1	2.9e-26	40.00	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G16910.1	4.2e-17	33.33	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G57150.4	2.7e-11	32.50	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G28160.1	5.9e-11	26.17	FER-like regulator of iron uptake	[more]
AT3G26744.1	7.7e-11	29.89	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CmaCh04G019180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|645237013\|ref\|XP_008225011.1\|	4.2e-43	52.66	PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1 [Prunus mume]	[more]
gi\|764553007\|ref\|XP_011460361.1\|	3.9e-41	52.34	PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1 [Fragaria vesca subsp. v...	[more]
gi\|359496236\|ref\|XP_003635187.1\|	8.8e-41	56.67	PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Vitis vinifera]	[more]
gi\|802795047\|ref\|XP_012092393.1\|	1.1e-40	51.46	PREDICTED: transcription factor DYT1 [Jatropha curcas]	[more]
gi\|359496224\|ref\|XP_003635181.1\|	4.4e-40	52.20	PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019180.1	CmaCh04G019180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 39..102 score: 1.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 39..85 score: 2.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 41..90 score: 7.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 35..84 score: 14
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 36..104 score: 9.42
None	No IPR available	unknown	Coil	Coil	coord: 74..101 scor
None	No IPR available	PANTHER	PTHR31945	FAMILY NOT NAMED	coord: 16..205 score: 6.2
None	No IPR available	PANTHER	PTHR31945:SF20	TRANSCRIPTION FACTOR DYSFUNCTIONAL TAPETUM 1	coord: 16..205 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G019180	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G019180	Wild cucumber (PI 183967)	cmacpiB767
CmaCh04G019180	Cucumber (Chinese Long) v2	cmacuB760
CmaCh04G019180	Melon (DHL92) v3.5.1	cmameB646
CmaCh04G019180	Melon (DHL92) v3.5.1	cmameB663
CmaCh04G019180	Watermelon (Charleston Gray)	cmawcgB622
CmaCh04G019180	Watermelon (Charleston Gray)	cmawcgB628
CmaCh04G019180	Watermelon (97103) v1	cmawmB733
CmaCh04G019180	Watermelon (97103) v1	cmawmB735
CmaCh04G019180	Watermelon (97103) v1	cmawmB739
CmaCh04G019180	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G019180	Cucurbita pepo (Zucchini)	cmacpeB725
CmaCh04G019180	Cucurbita pepo (Zucchini)	cmacpeB732
CmaCh04G019180	Bottle gourd (USVL1VR-Ls)	cmalsiB635
CmaCh04G019180	Cucumber (Gy14) v2	cgybcmaB667
CmaCh04G019180	Melon (DHL92) v3.6.1	cmamedB730
CmaCh04G019180	Cucumber (Chinese Long) v3	cmacucB0880
CmaCh04G019180	Watermelon (97103) v2	cmawmbB726
CmaCh04G019180	Watermelon (97103) v2	cmawmbB734
CmaCh04G019180	Wax gourd	cmawgoB0913
CmaCh04G019180	Wax gourd	cmawgoB0876
CmaCh04G019180	Wax gourd	cmawgoB0904