CmaCh04G019170 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G019170
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCma_Chr04 : 10220476 .. 10220934 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATCCCCAAACTGCAAGCTTCCATGGCTAAGTATGAAGCAAGCGAGATGATCAAGAAGAATACTAGAAATGGTGATAATGTTGAACTAAAAGCTTTTAGTGGCATTACTCGAGCTTCAACTCAAGTCAACAATCAAGGCATGGTACCAGAAATCCTTAGAAATAATAAGAATGTCGGGCCCAAGCTTAGTTCAAATACTCATCTAAAGGCATCAAATATGCAATTTAGTCGAGAGCAGATGAAGGAGATCTTTAGATATCATGATAGTGACAGAGATGGTTTTCTCAATATAAGAGAGCTAACAAAGGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGACATATGCTGACACAAATAAAGATGGTCTTATCAACGAGGCTGAACTTGACAAACTCGTTGATTATGCTCAGAAATTTATGAGGAAGAAATGA

mRNA sequence

ATGTTTATCCCCAAACTGCAAGCTTCCATGGCTAAGTATGAAGCAAGCGAGATGATCAAGAAGAATACTAGAAATGGTGATAATGTTGAACTAAAAGCTTTTAGTGGCATTACTCGAGCTTCAACTCAAGTCAACAATCAAGGCATGGTACCAGAAATCCTTAGAAATAATAAGAATGTCGGGCCCAAGCTTAGTTCAAATACTCATCTAAAGGCATCAAATATGCAATTTAGTCGAGAGCAGATGAAGGAGATCTTTAGATATCATGATAGTGACAGAGATGGTTTTCTCAATATAAGAGAGCTAACAAAGGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGACATATGCTGACACAAATAAAGATGGTCTTATCAACGAGGCTGAACTTGACAAACTCGTTGATTATGCTCAGAAATTTATGAGGAAGAAATGA

Coding sequence (CDS)

ATGTTTATCCCCAAACTGCAAGCTTCCATGGCTAAGTATGAAGCAAGCGAGATGATCAAGAAGAATACTAGAAATGGTGATAATGTTGAACTAAAAGCTTTTAGTGGCATTACTCGAGCTTCAACTCAAGTCAACAATCAAGGCATGGTACCAGAAATCCTTAGAAATAATAAGAATGTCGGGCCCAAGCTTAGTTCAAATACTCATCTAAAGGCATCAAATATGCAATTTAGTCGAGAGCAGATGAAGGAGATCTTTAGATATCATGATAGTGACAGAGATGGTTTTCTCAATATAAGAGAGCTAACAAAGGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTATGGCATGACATATGCTGACACAAATAAAGATGGTCTTATCAACGAGGCTGAACTTGACAAACTCGTTGATTATGCTCAGAAATTTATGAGGAAGAAATGA

Protein sequence

MFIPKLQASMAKYEASEMIKKNTRNGDNVELKAFSGITRASTQVNNQGMVPEILRNNKNVGPKLSSNTHLKASNMQFSREQMKEIFRYHDSDRDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADTNKDGLINEAELDKLVDYAQKFMRKK
BLAST of CmaCh04G019170 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-43
Identity = 102/173 (58.96%), Postives = 122/173 (70.52%), Query Frame = 1

Query: 1   MFIPKLQASMAKYEASEMIKKNTRNGDNVELKAFSGITRASTQVN-NQGMVPEILRNNKN 60
           M IP+LQ S AKYEAS+++KK  +NG+ V L AF+   R STQ+N N+ M  + L+ N +
Sbjct: 28  MHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDD 87

Query: 61  VGPKLSSNTHLK--------------------ASNMQFSREQMKEIFRYHDSDRDGFLNI 120
           V  KLSSN  LK                    ASNMQFSREQ+KEIF+Y+DSDRDGFLNI
Sbjct: 88  VAHKLSSNAQLKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNI 147

Query: 121 RELTKAFAFLGSIIPFEKASYGMTYADTNKDGLINEAELDKLVDYAQKFMRKK 153
           RE+TKAFA LGSI PF KA +GM YADTNKDGLI E ELDKL++YA KFM+KK
Sbjct: 148 REVTKAFALLGSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of CmaCh04G019170 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.5e-40
Identity = 96/176 (54.55%), Postives = 120/176 (68.18%), Query Frame = 1

Query: 1   MFIPKLQASMAKYEASEMIKKNTRNGDNVELKAFSGITRASTQVNN-QGMVPEILRNNKN 60
           M+I  LQ S AKYEAS+++KK+  N + V LKAF+GI  AST++NN Q M  EI+    N
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 61  --VGPKLSSNTHL---------------------KASNMQFSREQMKEIFRYHDSDRDGF 120
             V   L+SN ++                     KASNMQFSREQ+KEIF+YHDSD DGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 121 LNIRELTKAFAFLGSIIPFEKASYGMTYADTNKDGLINEAELDKLVDYAQKFMRKK 153
           LN+RE+TKAFAFLG+I+P  KA +GM YAD NKDGLI++ EL+KLVDYA KF  K+
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

BLAST of CmaCh04G019170 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-39
Identity = 93/172 (54.07%), Postives = 119/172 (69.19%), Query Frame = 1

Query: 1   MFIPKLQASMAKYEASEMIKKNTRNGDNVELKAFSGITRASTQVNNQGMVPEILRNNKNV 60
           M+I KLQASMA YEAS +IK+  +NGD V++KAF  + R+STQ+ N+  V +IL+ +  V
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGV 60

Query: 61  GPKLSSNTHL--------------------KASNMQFSREQMKEIFRYHDSDRDGFLNIR 120
             KL S  H+                    K+SNM  SRE++KEIF+YHD++ DGFLN  
Sbjct: 61  AHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRM 120

Query: 121 ELTKAFAFLGSIIPFEKASYGMTYADTNKDGLINEAELDKLVDYAQKFMRKK 153
           ELTKAFAFLGS+ PF KA YGM YAD N+DGLI+EAELDKL+DYA K ++KK
Sbjct: 121 ELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of CmaCh04G019170 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.1e-34
Identity = 89/172 (51.74%), Postives = 117/172 (68.02%), Query Frame = 1

Query: 1   MFIPKLQASMAKYEASEMIKKNTRNGDNV----ELKAFSGITRASTQVNNQGMVPE--IL 60
           M +  LQA  AK EA+E+IKK  RNGD V    EL++F    R STQ+NN   V    + 
Sbjct: 1   MSVSHLQA-WAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVP 60

Query: 61  RNNKNVGPKLSSNTHL--------------KASNMQFSREQMKEIFRYHDSDRDGFLNIR 120
           + N+N+  K+SSNT +              K SN+  SREQ+KEIF+YHDS++DGFL+IR
Sbjct: 61  KTNENLAQKVSSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIR 120

Query: 121 ELTKAFAFLGSIIPFEKASYGMTYADTNKDGLINEAELDKLVDYAQKFMRKK 153
           ELTKAF+ +GSI+PF KA Y M YAD ++DGL++EAELDKL+DYA K ++KK
Sbjct: 121 ELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of CmaCh04G019170 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.4e-20
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1

Query: 73  SNMQFSREQMKEIFRYHDSDRDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADTNKDGL 132
           S   FSRE+MKEIFR HD D DG+L+I EL KA  FLG  IPF KA YGM Y D N DGL
Sbjct: 7   SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 133 INEAELDKLVDYAQKFMRKK 153
           I+E ELDKL+DYA++F +++
Sbjct: 67  ISEDELDKLIDYAERFQKRR 86

BLAST of CmaCh04G019170 vs. TAIR10
Match: AT1G76650.1 (AT1G76650.1 calmodulin-like 38)

HSP 1 Score: 47.4 bits (111), Expect = 9.3e-06
Identity = 26/84 (30.95%), Postives = 48/84 (57.14%), Query Frame = 1

Query: 72  ASNMQFSREQMKEIFRYHDSDRDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADTNKDG 131
           +SN +    +++ +F Y D++RDG ++  EL K+F  LG  +  E+A   +  +DT+ DG
Sbjct: 34  SSNGEDKNRELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDG 93

Query: 132 LINEAELDKLV---DYAQKFMRKK 153
           +++  E  +L+   D  +K M  K
Sbjct: 94  MLDFEEFSQLIKVDDEEEKKMELK 117

BLAST of CmaCh04G019170 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 3.1e-43
Identity = 102/173 (58.96%), Postives = 122/173 (70.52%), Query Frame = 1

Query: 1   MFIPKLQASMAKYEASEMIKKNTRNGDNVELKAFSGITRASTQVN-NQGMVPEILRNNKN 60
           M IP+LQ S AKYEAS+++KK  +NG+ V L AF+   R STQ+N N+ M  + L+ N +
Sbjct: 28  MHIPQLQMSKAKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDD 87

Query: 61  VGPKLSSNTHLK--------------------ASNMQFSREQMKEIFRYHDSDRDGFLNI 120
           V  KLSSN  LK                    ASNMQFSREQ+KEIF+Y+DSDRDGFLNI
Sbjct: 88  VAHKLSSNAQLKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNI 147

Query: 121 RELTKAFAFLGSIIPFEKASYGMTYADTNKDGLINEAELDKLVDYAQKFMRKK 153
           RE+TKAFA LGSI PF KA +GM YADTNKDGLI E ELDKL++YA KFM+KK
Sbjct: 148 REVTKAFALLGSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

BLAST of CmaCh04G019170 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 9.3e-40
Identity = 96/176 (54.55%), Postives = 120/176 (68.18%), Query Frame = 1

Query: 1   MFIPKLQASMAKYEASEMIKKNTRNGDNVELKAFSGITRASTQVNN-QGMVPEILRNNKN 60
           M+I  LQ S AKYEAS+++KK+  N + V LKAF+GI  AST++NN Q M  EI+    N
Sbjct: 1   MYISNLQVSKAKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSN 60

Query: 61  --VGPKLSSNTHL---------------------KASNMQFSREQMKEIFRYHDSDRDGF 120
             V   L+SN ++                     KASNMQFSREQ+KEIF+YHDSD DGF
Sbjct: 61  HPVAHYLTSNAYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGF 120

Query: 121 LNIRELTKAFAFLGSIIPFEKASYGMTYADTNKDGLINEAELDKLVDYAQKFMRKK 153
           LN+RE+TKAFAFLG+I+P  KA +GM YAD NKDGLI++ EL+KLVDYA KF  K+
Sbjct: 121 LNLREVTKAFAFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

BLAST of CmaCh04G019170 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 2.1e-39
Identity = 93/172 (54.07%), Postives = 119/172 (69.19%), Query Frame = 1

Query: 1   MFIPKLQASMAKYEASEMIKKNTRNGDNVELKAFSGITRASTQVNNQGMVPEILRNNKNV 60
           M+I KLQASMA YEAS +IK+  +NGD V++KAF  + R+STQ+ N+  V +IL+ +  V
Sbjct: 1   MYISKLQASMAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGV 60

Query: 61  GPKLSSNTHL--------------------KASNMQFSREQMKEIFRYHDSDRDGFLNIR 120
             KL S  H+                    K+SNM  SRE++KEIF+YHD++ DGFLN  
Sbjct: 61  AHKLRSEAHIQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRM 120

Query: 121 ELTKAFAFLGSIIPFEKASYGMTYADTNKDGLINEAELDKLVDYAQKFMRKK 153
           ELTKAFAFLGS+ PF KA YGM YAD N+DGLI+EAELDKL+DYA K ++KK
Sbjct: 121 ELTKAFAFLGSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

BLAST of CmaCh04G019170 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 5.8e-34
Identity = 89/172 (51.74%), Postives = 117/172 (68.02%), Query Frame = 1

Query: 1   MFIPKLQASMAKYEASEMIKKNTRNGDNV----ELKAFSGITRASTQVNNQGMVPE--IL 60
           M +  LQA  AK EA+E+IKK  RNGD V    EL++F    R STQ+NN   V    + 
Sbjct: 1   MSVSHLQA-WAKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVP 60

Query: 61  RNNKNVGPKLSSNTHL--------------KASNMQFSREQMKEIFRYHDSDRDGFLNIR 120
           + N+N+  K+SSNT +              K SN+  SREQ+KEIF+YHDS++DGFL+IR
Sbjct: 61  KTNENLAQKVSSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIR 120

Query: 121 ELTKAFAFLGSIIPFEKASYGMTYADTNKDGLINEAELDKLVDYAQKFMRKK 153
           ELTKAF+ +GSI+PF KA Y M YAD ++DGL++EAELDKL+DYA K ++KK
Sbjct: 121 ELTKAFSSMGSIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

BLAST of CmaCh04G019170 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-30
Identity = 85/171 (49.71%), Postives = 112/171 (65.50%), Query Frame = 1

Query: 1   MFIPKLQASMAKYEASEMIKKNTRNGDNV----ELKAFSGITRAST-QVNNQGMVPEILR 60
           M +  LQA  AK EASE+IKK  RNGD V    EL++F    R    +  +   +P   +
Sbjct: 1   MSVSHLQA-WAKIEASELIKKYDRNGDGVLTKEELQSFLHDARLKNIRFVSSSTIP---K 60

Query: 61  NNKNVGPKLSSNTHLKA--------------SNMQFSREQMKEIFRYHDSDRDGFLNIRE 120
            N+N+  K+SSNT +K               SN+  SREQ+KEIF+YHDS++DGFL+IRE
Sbjct: 61  TNENLDQKVSSNTRIKPKKQLLDKAQDSLRQSNVPLSREQIKEIFKYHDSNKDGFLSIRE 120

Query: 121 LTKAFAFLGSIIPFEKASYGMTYADTNKDGLINEAELDKLVDYAQKFMRKK 153
           LTKAF  LGSI+PF KA + M YAD ++DGLI+EAEL KL+DYA+K ++KK
Sbjct: 121 LTKAFGSLGSIVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLF3_CUCSA2.1e-4358.96Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0KIY4_CUCSA6.5e-4054.55Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0KMQ1_CUCSA1.4e-3954.07Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
A0A0A0LRC8_CUCSA4.1e-3451.74Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA4.4e-2062.50Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G76650.19.3e-0630.95 calmodulin-like 38[more]
Match NameE-valueIdentityDescription
gi|700194512|gb|KGN49689.1|3.1e-4358.96hypothetical protein Csa_5G067670 [Cucumis sativus][more]
gi|700194513|gb|KGN49690.1|9.3e-4054.55hypothetical protein Csa_5G068170 [Cucumis sativus][more]
gi|700194510|gb|KGN49687.1|2.1e-3954.07hypothetical protein Csa_5G067410 [Cucumis sativus][more]
gi|449470190|ref|XP_004152801.1|5.8e-3451.74PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus][more]
gi|659089539|ref|XP_008445564.1|1.8e-3049.71PREDICTED: probable calcium-binding protein CML11 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019170.1CmaCh04G019170.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 80..140
score: 3.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 126..148
score: 6.563coord: 77..112
score: 12
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 8..142
score: 2.2
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 71..140
score: 9.41
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 90..102
score: -coord: 126..138
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 73..145
score: 5.4
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 73..145
score: 5.4

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None