CmaCh04G019090 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G019090
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCma_Chr04 : 10073878 .. 10074744 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAATAGAATTTTCTTTTATCACAGCTGGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAATTACGCAACTTGGAAATCAAACCTAAACACAATACTGGTAATTGATGATTTAAGGTTTGTTTTAACTGGGGAATGTTCTCCAAACCCCAGCTCAAATGCAAATCGAACAGTTCGGGATGCGTATGACAGATGGATAAAGGAAAATGACAAAGCTCGAGTGTACATTCTAGCTAGCATATCTGATGTTTTAGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAATCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGAGCTTAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGACAGAAGATAATGAAGTGGTCATTGATGAGAAGAGTCAAGTCAGTTTTCTTATGATGTCTCTTTCGAAGAGCTTCTTCCATTTCCGCACAAATGTGGTAATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAATCCCTCTTAATGAACAAGGGACAAACAGGAGAAGCAAATGTTGCTATCTCCAAGAAATTACTACGAGGATCGTCCTCCAAAAATAAGTCTAGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAACGGTAAAGGGAAAAATAAGATTCCTACTAACCGCAAACACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCGAAATACCTTGCAGAATAG

mRNA sequence

ATGACTAATAGAATTTTCTTTTATCACAGCTGGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAATTACGCAACTTGGAAATCAAACCTAAACACAATACTGGTAATTGATGATTTAAGGTTTGTTTTAACTGGGGAATGTTCTCCAAACCCCAGCTCAAATGCAAATCGAACAGTTCGGGATGCGTATGACAGATGGATAAAGGAAAATGACAAAGCTCGAGTGTACATTCTAGCTAGCATATCTGATGTTTTAGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAATCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGAGCTTAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGACAGAAGATAATGAAGTGGTCATTGATGAGAAGAGTCAAGTCAGTTTTCTTATGATGTCTCTTTCGAAGAGCTTCTTCCATTTCCGCACAAATGTGGTAATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAATCCCTCTTAATGAACAAGGGACAAACAGGAGAAGCAAATGTTGCTATCTCCAAGAAATTACTACGAGGATCGTCCTCCAAAAATAAGTCTAGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAACGGTAAAGGGAAAAATAAGATTCCTACTAACCGCAAACACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCGAAATACCTTGCAGAATAG

Coding sequence (CDS)

ATGACTAATAGAATTTTCTTTTATCACAGCTGGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAATTACGCAACTTGGAAATCAAACCTAAACACAATACTGGTAATTGATGATTTAAGGTTTGTTTTAACTGGGGAATGTTCTCCAAACCCCAGCTCAAATGCAAATCGAACAGTTCGGGATGCGTATGACAGATGGATAAAGGAAAATGACAAAGCTCGAGTGTACATTCTAGCTAGCATATCTGATGTTTTAGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAATCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGAGCTTAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGACAGAAGATAATGAAGTGGTCATTGATGAGAAGAGTCAAGTCAGTTTTCTTATGATGTCTCTTTCGAAGAGCTTCTTCCATTTCCGCACAAATGTGGTAATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAATCCCTCTTAATGAACAAGGGACAAACAGGAGAAGCAAATGTTGCTATCTCCAAGAAATTACTACGAGGATCGTCCTCCAAAAATAAGTCTAGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAACGGTAAAGGGAAAAATAAGATTCCTACTAACCGCAAACACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCGAAATACCTTGCAGAATAG

Protein sequence

MTNRIFFYHSWTNSIVQLLASEKLNGDNYATWKSNLNTILVIDDLRFVLTGECSPNPSSNANRTVRDAYDRWIKENDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQSSFSLRHEAIKYIYNCRMKEGSLVREHVLDMMVHFNVTEDNEVVIDEKSQVSFLMMSLSKSFFHFRTNVVMNKIEYNLTALLNELQTYQSLLMNKGQTGEANVAISKKLLRGSSSKNKSRPSTSKSVLMKKNGKGKNKIPTNRKHKVQKADKGKCFHCNENGHWKRNCPKYLAE
Homology
[Close]
BLAST of CmaCh04G019090 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 4.9e-97
Identity = 192/276 (69.57%), Postives = 226/276 (81.88%), Query Frame = 1 

Query: 14  SIVQLLASEKLNGDNYATWKSNLNTILVIDDLRFVLTGECSPNPSSNANRTVRDAYDRWI 73
           SIVQLLASEKLNGDNY+ WKSNLNTILV+DDLRFVLT EC   P+ NANRTVR+AYDRW+
Sbjct: 4   SIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYDRWV 63

Query: 74  KENDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQSSFSLRHEAIKYIYNCRMK 133
           K NDKARVYILAS++DVLAKKHD + TAK IM+SL+ MFGQ S+SLRHEAIK+IY  RMK
Sbjct: 64  KANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMK 123

Query: 134 EGSLVREHVLDMMVHFNVTEDNEVVIDEKSQVSFLMMSLSKSFFHFRTNVVMNKIEYNLT 193
           EG+ VREHVLDMM+HFN+ E N   IDE +QVSF++ SL KSF  F+TN  +NKIE+NLT
Sbjct: 124 EGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLT 183

Query: 194 ALLNELQTYQSLLMNKGQTGEANVAISK-KLLRGSSSKNKSRPSTSKSVLMKKNGKGKNK 253
            LLNELQ +Q+L ++KG+  EANVA++K K +RGSSSKNK  PS ++   MKK GKG  K
Sbjct: 184 TLLNELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQ---MKKKGKG--K 243

Query: 254 IPTNRKHKVQKADKGKCFHCNENGHWKRNCPKYLAE 289
            P   K K + ADKGKCFHCN++GHWKRNCPKYLAE
Sbjct: 244 APNTSKVK-KNADKGKCFHCNQDGHWKRNCPKYLAE 273

[Close]
BLAST of CmaCh04G019090 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.3e-57
Identity = 138/282 (48.94%), Postives = 181/282 (64.18%), Query Frame = 1 

Query: 14  SIVQLLASEKLNGDNYATWKSNLNTILV-IDDLRFVLTGECSPNPSSNANRTVRDAYDRW 73
           SIVQLLASEK +G N++ WKSNL  +L+ +DDLRFVLT      P+ NANR V++AYDRW
Sbjct: 4   SIVQLLASEKDDGSNFSAWKSNLIKLLLKVDDLRFVLTRALGDAPALNANRDVKNAYDRW 63

Query: 74  IKENDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQSSFSLRHEAIKYIYNCRM 133
           +K ND  R  +LA++S  L ++++ + TAK IM+ LK +F ++++SLRHEA    Y  RM
Sbjct: 64  VKANDVQRAVMLATMSPELQRRYERIATAKGIMDELKFIFQKNTWSLRHEAFTKFYTKRM 123

Query: 134 KEGSLVREHVLDMMVHFNVTEDNEVVIDEKSQVSFLMMSLSKSFFHFRTNVVMNKIEYNL 193
           KEG+ V EHVLDM ++ +  E N   IDE + VSF++ SL KS+  F  N  MNK+  + 
Sbjct: 124 KEGTSVSEHVLDMAMYSSRAEVNGGPIDEANAVSFILQSLPKSYKGFLLNASMNKMNKSP 183

Query: 194 TALLNELQTYQSLLMNKG-QTGEANVAISKKLLRG-----SSSKNKSRPSTSKSVLMKKN 253
             L NELQ +Q+L ++K  +    N   +K+  R       SSKNK  P   K   MKK 
Sbjct: 184 GELFNELQRFQNLTLSKEVEANMVNKVTAKRFKRNDKGKKGSSKNKVGPDEIK---MKKK 243

Query: 254 GKGKNKIPTNRKHKVQKADKGKCFHCNENGHWKRNCPKYLAE 289
           GKGK      +  K   ADKGKCFHCNE GHWKRNCPKYLA+
Sbjct: 244 GKGK---AAKKGKKGSAADKGKCFHCNEMGHWKRNCPKYLAD 279

[Close]
BLAST of CmaCh04G019090 vs. TrEMBL
Match: E2GK52_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 5.1e-54
Identity = 110/161 (68.32%), Postives = 132/161 (81.99%), Query Frame = 1 

Query: 14  SIVQLLASEKLNGDNYATWKSNLNTILVIDDLRFVLTGECSPNPSSNANRTVRDAYDRWI 73
           SIVQLLASEKLN DNY+ WKSNLNTILV++DLRF+LT EC   P+ NANRTVR+AYDRW 
Sbjct: 4   SIVQLLASEKLNSDNYSAWKSNLNTILVVEDLRFILTEECHQAPALNANRTVREAYDRWG 63

Query: 74  KENDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQSSFSLRHEAIKYIYNCRMK 133
           K NDKA VYILAS++DVLAKK+D + T K IM+S + MFGQ S+SLRHEAIK IY  RMK
Sbjct: 64  KANDKACVYILASMTDVLAKKYDSIATTKGIMDSFREMFGQPSWSLRHEAIKRIYTKRMK 123

Query: 134 EGSLVREHVLDMMVHFNVTEDNEVVIDEKSQVSFLMMSLSK 175
           EG+ VREHVLDMM+HFN+ + +   IDE +QVSF++ SL +
Sbjct: 124 EGTSVREHVLDMMMHFNIAKVHGGPIDEANQVSFILQSLRR 164

[Close]
BLAST of CmaCh04G019090 vs. TrEMBL
Match: W9SH28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.4e-48
Identity = 101/200 (50.50%), Postives = 140/200 (70.00%), Query Frame = 1 

Query: 12  TNSIVQLLASEKLNGDNYATWKSNLNTILVIDDLRFVLTGECSPNPSSNANRTVRDAYDR 71
           +N I+ LL +EKL+GDNYA WKSN+N +L+ +D +FVL  EC P P++NA +T R+ YDR
Sbjct: 2   SNLIIILLVTEKLDGDNYAKWKSNMNILLICEDYKFVLVDECPPEPAANATKTAREPYDR 61

Query: 72  WIKENDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQSSFSLRHEAIKYIYNCR 131
           WIK N+KA+ ++LAS+SDVL KKH+ M TA EIMESL+ MFG  S   R +A++   N +
Sbjct: 62  WIKANNKAKCFMLASMSDVLCKKHEEMETAYEIMESLEAMFGAPSEKARLDAVRAFMNDK 121

Query: 132 MKEGSLVREHVLDMMVHFNVTEDNEVVIDEKSQVSFLMMSLSKSFFHFRTNVVMNKIEYN 191
           MK+GS V+ HVL+M+ H +  E N   IDE +Q+  ++ SLS  F  F  N VMNK + N
Sbjct: 122 MKKGSSVKAHVLNMIDHLHDAELNGARIDEATQLGIILESLSPDFHEFVNNFVMNKKKSN 181

Query: 192 LTALLNELQTYQSLLMNKGQ 212
           LT L+N+LQ ++S    KG+
Sbjct: 182 LTELMNDLQNFESTNQAKGR 201

[Close]
BLAST of CmaCh04G019090 vs. TrEMBL
Match: W9RXH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.6e-47
Identity = 100/192 (52.08%), Postives = 136/192 (70.83%), Query Frame = 1 

Query: 13  NSIVQLLASEKLNGDNYATWKSNLNTILVIDDLRFVLTGECSPNPSSNANRTVRDAYDRW 72
           N I+ LLA+EKL+GDNYA WKSN+N +LV +D +F+L  EC   P+ NA++T R+ YDRW
Sbjct: 3   NPIITLLATEKLDGDNYAKWKSNMNILLVCEDYKFLLAEECPLEPADNASKTAREPYDRW 62

Query: 73  IKENDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQSSFSLRHEAIKYIYNCRM 132
           IK N+KA+ ++LAS+SDVL KKH  M TA EIMESL+ MFG  S     +A++   N +M
Sbjct: 63  IKANNKAKCFMLASMSDVLRKKHGEMETAYEIMESLEAMFGAPSEKACLDAVRAFMNDKM 122

Query: 133 KEGSLVREHVLDMMVHFNVTEDNEVVIDEKSQVSFLMMSLSKSFFHFRTNVVMNKIEYNL 192
           K+GS V+ HVL+M+ H + TE N   IDE +QV  ++ SLS  F  F  N+VMNK + NL
Sbjct: 123 KKGSSVKAHVLNMIDHLHDTELNGARIDEATQVGIILESLSPDFHEFVNNLVMNKKKSNL 182

Query: 193 TALLNELQTYQS 205
           T L+N+LQ ++S
Sbjct: 183 TELMNDLQNFES 194

[Close]
BLAST of CmaCh04G019090 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 362.5 bits (929), Expect = 7.0e-97
Identity = 192/276 (69.57%), Postives = 226/276 (81.88%), Query Frame = 1 

Query: 14  SIVQLLASEKLNGDNYATWKSNLNTILVIDDLRFVLTGECSPNPSSNANRTVRDAYDRWI 73
           SIVQLLASEKLNGDNY+ WKSNLNTILV+DDLRFVLT EC   P+ NANRTVR+AYDRW+
Sbjct: 4   SIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYDRWV 63

Query: 74  KENDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQSSFSLRHEAIKYIYNCRMK 133
           K NDKARVYILAS++DVLAKKHD + TAK IM+SL+ MFGQ S+SLRHEAIK+IY  RMK
Sbjct: 64  KANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMK 123

Query: 134 EGSLVREHVLDMMVHFNVTEDNEVVIDEKSQVSFLMMSLSKSFFHFRTNVVMNKIEYNLT 193
           EG+ VREHVLDMM+HFN+ E N   IDE +QVSF++ SL KSF  F+TN  +NKIE+NLT
Sbjct: 124 EGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLT 183

Query: 194 ALLNELQTYQSLLMNKGQTGEANVAISK-KLLRGSSSKNKSRPSTSKSVLMKKNGKGKNK 253
            LLNELQ +Q+L ++KG+  EANVA++K K +RGSSSKNK  PS ++   MKK GKG  K
Sbjct: 184 TLLNELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQ---MKKKGKG--K 243

Query: 254 IPTNRKHKVQKADKGKCFHCNENGHWKRNCPKYLAE 289
            P   K K + ADKGKCFHCN++GHWKRNCPKYLAE
Sbjct: 244 APNTSKVK-KNADKGKCFHCNQDGHWKRNCPKYLAE 273

[Close]
BLAST of CmaCh04G019090 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 5.2e-84
Identity = 165/281 (58.72%), Postives = 216/281 (76.87%), Query Frame = 1 

Query: 12  TNSIVQLLASEKLNGDNYATWKSNLNTILVIDDLRFVLTGECSPNPSSNANRTVRDAYDR 71
           T++ + +L ++K NG+NYA+WK+ +NT+L+IDDLRFVL  +C    ++NA RTVR+AY+R
Sbjct: 2   TSATLNMLVADKFNGNNYASWKNTINTVLIIDDLRFVLVEKCPQVSAANATRTVREAYER 61

Query: 72  WIKENDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQSSFSLRHEAIKYIYNCR 131
           W K N+KAR Y+LAS+S+VLAKK++ M TA+EIM+SL+ MFGQ+S+ ++H+A+KYIYN R
Sbjct: 62  WAKANEKARAYLLASLSEVLAKKNESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNAR 121

Query: 132 MKEGSLVREHVLDMMVHFNVTEDNEVVIDEKSQVSFLMMSLSKSFFHFRTNVVMNKIEYN 191
           M +G+LVREHVL+MMV+FNV E N  VIDE +QVSF++ SL +SF  FR+NVVMNKI Y 
Sbjct: 122 MNDGALVREHVLNMMVYFNVAEMNGAVIDEANQVSFILESLLESFLQFRSNVVMNKIAYT 181

Query: 192 LTALLNELQTYQSLLMNKGQTGEANVAIS-KKLLRGSSSKNKSRPSTS--KSVLMKKNGK 251
           LT LLNELQT++SL+  KGQ GEANVA S +K  RGS+S  K  PS+S  K    KK G+
Sbjct: 182 LTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKYMPSSSGNKKWKKKKGGQ 241

Query: 252 G-KNKIPTNRKHKVQKADKGKCFHCNENGHWKRNCPKYLAE 289
           G K  +   +  K  K  KG CFHCN+ GHWKRNCPKYLAE
Sbjct: 242 GNKANLAATKTSKKAKVAKGICFHCNQEGHWKRNCPKYLAE 282

[Close]
BLAST of CmaCh04G019090 vs. NCBI nr
Match: gi|778697615|ref|XP_011654359.1| (PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62
Identity = 122/167 (73.05%), Postives = 144/167 (86.23%), Query Frame = 1 

Query: 13  NSIVQLLASEKLNGDNYATWKSNLNTILVIDDLRFVLTGECSPNPSSNANRTVRDAYDRW 72
           +SIVQLLASEK+N DNYA WKSNLNTILV+DDLRFVLT EC  NP+SNANRT R+AYDRW
Sbjct: 3   SSIVQLLASEKINDDNYAAWKSNLNTILVVDDLRFVLTEECPQNPASNANRTGREAYDRW 62

Query: 73  IKENDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQSSFSLRHEAIKYIYNCRM 132
           IK N+KARVYILAS+SDVLAKKH+ + TAKEIM+SL+GMFGQ  +SLRHEA+KYIY  RM
Sbjct: 63  IKANEKARVYILASMSDVLAKKHESLATAKEIMDSLRGMFGQPEWSLRHEAVKYIYTKRM 122

Query: 133 KEGSLVREHVLDMMVHFNVTEDNEVVIDEKSQVSFLMMSLSKSFFHF 180
           KEG+ VREHVLDMM+HFN+ + N  +I+E +QVSF++ SL KSF  F
Sbjct: 123 KEGTSVREHVLDMMMHFNIAQVNGGLIEEVNQVSFILESLPKSFIPF 169

[Close]
BLAST of CmaCh04G019090 vs. NCBI nr
Match: gi|659086056|ref|XP_008443743.1| (PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 116/157 (73.89%), Postives = 133/157 (84.71%), Query Frame = 1 

Query: 13  NSIVQLLASEKLNGDNYATWKSNLNTILVIDDLRFVLTGECSPNPSSNANRTVRDAYDRW 72
           +SIVQLLA EKLNGDNYA WKSNLNTILV+DDLRFVLT EC   PSSNA++T R AYDRW
Sbjct: 3   SSIVQLLAFEKLNGDNYAAWKSNLNTILVVDDLRFVLTEECPQTPSSNASQTSRKAYDRW 62

Query: 73  IKENDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQSSFSLRHEAIKYIYNCRM 132
           IK N+KARVYILAS+SDVLAKKH+ + TAKEIM SLKGMFGQ  +SLRHE IKYIY  RM
Sbjct: 63  IKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSLRHETIKYIYTKRM 122

Query: 133 KEGSLVREHVLDMMVHFNVTEDNEVVIDEKSQVSFLM 170
           KEG+ ++EHVLDMM+HFN+ E N   IDE +QVSF++
Sbjct: 123 KEGTSIKEHVLDMMMHFNIFEVNGGAIDEANQVSFIL 159

[Close]
BLAST of CmaCh04G019090 vs. NCBI nr
Match: gi|1019597807|gb|AMY96445.1| (gag/pol protein [Momordica dioica])

HSP 1 Score: 231.5 bits (589), Expect = 1.9e-57
Identity = 138/282 (48.94%), Postives = 181/282 (64.18%), Query Frame = 1 

Query: 14  SIVQLLASEKLNGDNYATWKSNLNTILV-IDDLRFVLTGECSPNPSSNANRTVRDAYDRW 73
           SIVQLLASEK +G N++ WKSNL  +L+ +DDLRFVLT      P+ NANR V++AYDRW
Sbjct: 4   SIVQLLASEKDDGSNFSAWKSNLIKLLLKVDDLRFVLTRALGDAPALNANRDVKNAYDRW 63

Query: 74  IKENDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQSSFSLRHEAIKYIYNCRM 133
           +K ND  R  +LA++S  L ++++ + TAK IM+ LK +F ++++SLRHEA    Y  RM
Sbjct: 64  VKANDVQRAVMLATMSPELQRRYERIATAKGIMDELKFIFQKNTWSLRHEAFTKFYTKRM 123

Query: 134 KEGSLVREHVLDMMVHFNVTEDNEVVIDEKSQVSFLMMSLSKSFFHFRTNVVMNKIEYNL 193
           KEG+ V EHVLDM ++ +  E N   IDE + VSF++ SL KS+  F  N  MNK+  + 
Sbjct: 124 KEGTSVSEHVLDMAMYSSRAEVNGGPIDEANAVSFILQSLPKSYKGFLLNASMNKMNKSP 183

Query: 194 TALLNELQTYQSLLMNKG-QTGEANVAISKKLLRG-----SSSKNKSRPSTSKSVLMKKN 253
             L NELQ +Q+L ++K  +    N   +K+  R       SSKNK  P   K   MKK 
Sbjct: 184 GELFNELQRFQNLTLSKEVEANMVNKVTAKRFKRNDKGKKGSSKNKVGPDEIK---MKKK 243

Query: 254 GKGKNKIPTNRKHKVQKADKGKCFHCNENGHWKRNCPKYLAE 289
           GKGK      +  K   ADKGKCFHCNE GHWKRNCPKYLA+
Sbjct: 244 GKGK---AAKKGKKGSAADKGKCFHCNEMGHWKRNCPKYLAD 279

The following BLAST results are available for this feature:
BLAST of CmaCh04G019090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G019090 vs. TrEMBL
Match NameE-valueIdentityDescription
E2GK51_BRYDI4.9e-9769.57Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
A0A165U314_9ROSI1.3e-5748.94Gag/pol protein OS=Momordica dioica PE=4 SV=1[more]
E2GK52_BRYDI5.1e-5468.32Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
W9SH28_9ROSA1.4e-4850.50Uncharacterized protein OS=Morus notabilis GN=L484_004989 PE=4 SV=1[more]
W9RXH5_9ROSA4.6e-4752.08Uncharacterized protein OS=Morus notabilis GN=L484_001554 PE=4 SV=1[more]
BLAST of CmaCh04G019090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G019090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|299474487|gb|ADJ18449.1|7.0e-9769.57gag/pol protein [Bryonia dioica][more]
gi|659113933|ref|XP_008456826.1|5.2e-8458.72PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
gi|778697615|ref|XP_011654359.1|1.5e-6273.05PREDICTED: uncharacterized protein LOC105435361 [Cucumis sativus][more]
gi|659086056|ref|XP_008443743.1|1.3e-5873.89PREDICTED: uncharacterized protein LOC103487255, partial [Cucumis melo][more]
gi|1019597807|gb|AMY96445.1|1.9e-5748.94gag/pol protein [Momordica dioica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G019090.1CmaCh04G019090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 264..284
score: 4.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 267..284
score: 1.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 268..284
score: 0.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 268..284
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 259..285
score: 3.4
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 22..285
score: 3.7
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 22..285
score: 3.7
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 72..202
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G019090Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G019090Wild cucumber (PI 183967)cmacpiB767
CmaCh04G019090Cucumber (Chinese Long) v2cmacuB760
CmaCh04G019090Melon (DHL92) v3.5.1cmameB646
CmaCh04G019090Watermelon (Charleston Gray)cmawcgB622
CmaCh04G019090Watermelon (Charleston Gray)cmawcgB628
CmaCh04G019090Watermelon (97103) v1cmawmB733
CmaCh04G019090Watermelon (97103) v1cmawmB735
CmaCh04G019090Watermelon (97103) v1cmawmB739
CmaCh04G019090Watermelon (97103) v1cmawmB745
CmaCh04G019090Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G019090Cucurbita pepo (Zucchini)cmacpeB725
CmaCh04G019090Cucurbita pepo (Zucchini)cmacpeB732
CmaCh04G019090Bottle gourd (USVL1VR-Ls)cmalsiB635
CmaCh04G019090Cucumber (Gy14) v2cgybcmaB667
CmaCh04G019090Cucumber (Gy14) v2cgybcmaB691
CmaCh04G019090Melon (DHL92) v3.6.1cmamedB730
CmaCh04G019090Cucumber (Chinese Long) v3cmacucB0903
CmaCh04G019090Watermelon (97103) v2cmawmbB726
CmaCh04G019090Watermelon (97103) v2cmawmbB734
CmaCh04G019090Wax gourdcmawgoB0913
CmaCh04G019090Wax gourdcmawgoB0876
CmaCh04G019090Wax gourdcmawgoB0904