CmaCh04G019040 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G019040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	30S ribosomal protein S7, chloroplastic
Location	Cma_Chr04 : 10041889 .. 10042356 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACGTCGAGGTACTGCAGAAGAAAAAATTGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAAGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

mRNA sequence

ATGTCACGTCGAGGTACTGCAGAAGAAAAAATTGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAAGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Coding sequence (CDS)

ATGTCACGTCGAGGTACTGCAGAAGAAAAAATTGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAAGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA

Protein sequence

MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR

Homology

[Close]

BLAST of CmaCh04G019040 vs. Swiss-Prot
Match: RR7_MANES (30S ribosomal protein S7, chloroplastic OS=Manihot esculenta GN=rps7-A PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.8e-78
Identity = 153/155 (98.71%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEK AKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. Swiss-Prot
Match: RR7_EUCGG (30S ribosomal protein S7, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps7-A PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.8e-78
Identity = 153/155 (98.71%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEK AKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. Swiss-Prot
Match: RR7_SOYBN (30S ribosomal protein S7, chloroplastic OS=Glycine max GN=rps7-A PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.3e-78
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEK AKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRV GSTHQVP+EIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPVEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. Swiss-Prot
Match: RR7_EUOAL (30S ribosomal protein S7, chloroplastic OS=Euonymus alatus GN=rps7 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.0e-78
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEK AKSDPIYRNRLVNMLVNRILKHGKKSLAYQI+YRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. Swiss-Prot
Match: RR7_LEPVR (30S ribosomal protein S7, chloroplastic OS=Lepidium virginicum GN=rps7-A PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 3.9e-78
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEK AKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRA+KKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. TrEMBL
Match: A0A0S2IDZ0_9ROSI (Ribosomal protein S7 OS=Cucurbita argyrosperma var. palmeri GN=rps7 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-77
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. TrEMBL
Match: A0A0S2IE68_9ROSI (Ribosomal protein S7 OS=Cucurbita argyrosperma subsp. sororia GN=rps7 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-77
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. TrEMBL
Match: A0A0S2IE92_9ROSI (Ribosomal protein S7 OS=Cucurbita ecuadorensis GN=rps7 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-77
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. TrEMBL
Match: A0A0S2IGC7_9ROSI (Ribosomal protein S7 OS=Cucurbita lundelliana GN=rps7 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-77
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. TrEMBL
Match: A0A0S2IH14_CUCPE (Ribosomal protein S7 OS=Cucurbita pepo subsp. pepo GN=rps7 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.8e-77
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7)

HSP 1 Score: 292.0 bits (746), Expect = 2.2e-79
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEK AKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRA+KKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 292.0 bits (746), Expect = 2.2e-79
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEK AKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRA+KKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. TAIR10
Match: AT2G07696.1 (AT2G07696.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-13
Identity = 45/140 (32.14%), Postives = 79/140 (56.43%), Query Frame = 1


Query: 22  LVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVS 81
           L+  LVN  +K GK++    I+Y+   +   +TE + + ++  A+  + P   V    V+
Sbjct: 11  LIKKLVNFRMKEGKRTRVRAIVYQTFHR-PARTERDVIKLMVDAVENIKPICEVAKVGVA 70

Query: 82  GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLS------SELVDAAKGSGDAI 141
           G+ + VP  +   + + LAIRW+L A+ KR    +++++S      +E++DA +  G A 
Sbjct: 71  GTIYDVPGIVARDRQQTLAIRWILEAAFKR---RISYRISLEKCSFAEILDAYQKRGSAR 130

Query: 142 RKKEETHRMAEANRAFAHFR 156
           RK+E  H +A  NR+FAHFR
Sbjct: 131 RKRENLHGLASTNRSFAHFR 146

[Close]

BLAST of CmaCh04G019040 vs. TAIR10
Match: ATMG01270.1 (ATMG01270.1 mitochondrial ribosomal protein S7)

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-13
Identity = 45/140 (32.14%), Postives = 79/140 (56.43%), Query Frame = 1


Query: 22  LVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVS 81
           L+  LVN  +K GK++    I+Y+   +   +TE + + ++  A+  + P   V    V+
Sbjct: 11  LIKKLVNFRMKEGKRTRVRAIVYQTFHR-PARTERDVIKLMVDAVENIKPICEVAKVGVA 70

Query: 82  GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKLS------SELVDAAKGSGDAI 141
           G+ + VP  +   + + LAIRW+L A+ KR    +++++S      +E++DA +  G A 
Sbjct: 71  GTIYDVPGIVARDRQQTLAIRWILEAAFKR---RISYRISLEKCSFAEILDAYQKRGSAR 130

Query: 142 RKKEETHRMAEANRAFAHFR 156
           RK+E  H +A  NR+FAHFR
Sbjct: 131 RKRENLHGLASTNRSFAHFR 146

[Close]

BLAST of CmaCh04G019040 vs. TAIR10
Match: AT2G37270.1 (AT2G37270.1 ribosomal protein 5B)

HSP 1 Score: 54.3 bits (129), Expect = 7.8e-08
Identity = 45/134 (33.58%), Postives = 71/134 (52.99%), Query Frame = 1


Query: 21  RLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRV 80
           RL N L+     +GKK +A +I+  AM+ I   ++ NP+ V+  AI    P         
Sbjct: 74  RLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGS 133

Query: 81  SGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD--AI 140
           +G   +  ++I   +    AI  L   +R+   RN   +A  L+ EL++AAKGS +  AI
Sbjct: 134 AGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAI 193

Query: 141 RKKEETHRMAEANR 150
           +KK+E  R+A+ANR
Sbjct: 194 KKKDEIERVAKANR 207

[Close]

BLAST of CmaCh04G019040 vs. NCBI nr
Match: gi|952954389|gb|ALO21753.1| (ribosomal protein S7 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 296.6 bits (758), Expect = 2.5e-77
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. NCBI nr
Match: gi|346578237|ref|YP_004841829.1| (ribosomal protein S7 [Cucumis melo subsp. melo])

HSP 1 Score: 295.0 bits (754), Expect = 7.4e-77
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. NCBI nr
Match: gi|984914471|gb|AMC32664.1| (ribosomal protein S7 (chloroplast) [Euphorbia marginata])

HSP 1 Score: 294.7 bits (753), Expect = 9.7e-77
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEK AKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. NCBI nr
Match: gi|317046218|ref|YP_004072507.1| (ribosomal protein S7 [Corynocarpus laevigata])

HSP 1 Score: 294.3 bits (752), Expect = 1.3e-76
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQI+YRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]

BLAST of CmaCh04G019040 vs. NCBI nr
Match: gi|108802686|ref|YP_636344.1| (ribosomal protein S7 (chloroplast) [Eucalyptus globulus subsp. globulus])

HSP 1 Score: 293.1 bits (749), Expect = 2.8e-76
Identity = 153/155 (98.71%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 1   MSRRGTAEEKIAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60
           MSRRGTAEEK AKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS
Sbjct: 1   MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRAMKKIQQKTETNPLS 60

Query: 61  VLRQAIRGVTPDIAVKARRVSGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120
           VLRQAIRGVTPDIAVKARRV GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL
Sbjct: 61  VLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRNMAFKL 120

Query: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 156
           SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR
Sbjct: 121 SSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

The following BLAST results are available for this feature:

BLAST of CmaCh04G019040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR7_MANES	1.8e-78	98.71	30S ribosomal protein S7, chloroplastic OS=Manihot esculenta GN=rps7-A PE=3 SV=1	[more]
RR7_EUCGG	1.8e-78	98.71	30S ribosomal protein S7, chloroplastic OS=Eucalyptus globulus subsp. globulus G...	[more]
RR7_SOYBN	2.3e-78	98.06	30S ribosomal protein S7, chloroplastic OS=Glycine max GN=rps7-A PE=3 SV=1	[more]
RR7_EUOAL	3.0e-78	98.06	30S ribosomal protein S7, chloroplastic OS=Euonymus alatus GN=rps7 PE=3 SV=1	[more]
RR7_LEPVR	3.9e-78	98.06	30S ribosomal protein S7, chloroplastic OS=Lepidium virginicum GN=rps7-A PE=3 SV...	[more]

BLAST of CmaCh04G019040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IDZ0_9ROSI	1.8e-77	100.00	Ribosomal protein S7 OS=Cucurbita argyrosperma var. palmeri GN=rps7 PE=3 SV=1	[more]
A0A0S2IE68_9ROSI	1.8e-77	100.00	Ribosomal protein S7 OS=Cucurbita argyrosperma subsp. sororia GN=rps7 PE=3 SV=1	[more]
A0A0S2IE92_9ROSI	1.8e-77	100.00	Ribosomal protein S7 OS=Cucurbita ecuadorensis GN=rps7 PE=3 SV=1	[more]
A0A0S2IGC7_9ROSI	1.8e-77	100.00	Ribosomal protein S7 OS=Cucurbita lundelliana GN=rps7 PE=3 SV=1	[more]
A0A0S2IH14_CUCPE	1.8e-77	100.00	Ribosomal protein S7 OS=Cucurbita pepo subsp. pepo GN=rps7 PE=3 SV=1	[more]

BLAST of CmaCh04G019040 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01240.1	2.2e-79	98.06	ATCG01240.1 ribosomal protein S7	[more]
ATCG00900.1	2.2e-79	98.06	ATCG00900.1 Ribosomal protein S7p/S5e family protein	[more]
AT2G07696.1	4.7e-13	32.14	Ribosomal protein S7p/S5e family protein	[more]
ATMG01270.1	4.7e-13	32.14	ATMG01270.1 mitochondrial ribosomal protein S7	[more]
AT2G37270.1	7.8e-08	33.58	ribosomal protein 5B	[more]

BLAST of CmaCh04G019040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|952954389\|gb\|ALO21753.1\|	2.5e-77	100.00	ribosomal protein S7 (plastid) [Cucurbita argyrosperma]	[more]
gi\|346578237\|ref\|YP_004841829.1\|	7.4e-77	99.35	ribosomal protein S7 [Cucumis melo subsp. melo]	[more]
gi\|984914471\|gb\|AMC32664.1\|	9.7e-77	99.35	ribosomal protein S7 (chloroplast) [Euphorbia marginata]	[more]
gi\|317046218\|ref\|YP_004072507.1\|	1.3e-76	98.71	ribosomal protein S7 [Corynocarpus laevigata]	[more]
gi\|108802686\|ref\|YP_636344.1\|	2.8e-76	98.71	ribosomal protein S7 (chloroplast) [Eucalyptus globulus subsp. globulus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000235	Ribosomal_S5/S7
IPR005717	Ribosomal_S7_bac/org-type
IPR020606	Ribosomal_S7_CS
IPR023798	Ribosomal_S7_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019040.1	CmaCh04G019040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000235	Ribosomal protein S5/S7	PIR	PIRSF002122	RPS7p_RPS7a_RPS5e_RPS7o	coord: 3..155 score: 2.6
IPR000235	Ribosomal protein S5/S7	PANTHER	PTHR11205	RIBOSOMAL PROTEIN S7	coord: 1..155 score: 2.4E
IPR005717	Ribosomal protein S7, bacterial/organellar-type	HAMAP	MF_00480_B	Ribosomal_S7_B	coord: 1..155 score: 30
IPR005717	Ribosomal protein S7, bacterial/organellar-type	TIGRFAMs	TIGR01029	TIGR01029	coord: 3..155 score: 2.5
IPR020606	Ribosomal protein S7, conserved site	PROSITE	PS00052	RIBOSOMAL_S7	coord: 20..46 scor
IPR023798	Ribosomal protein S7 domain	GENE3D	G3DSA:1.10.455.10		coord: 1..149 score: 2.4
IPR023798	Ribosomal protein S7 domain	PFAM	PF00177	Ribosomal_S7	coord: 1..149 score: 2.4
IPR023798	Ribosomal protein S7 domain	unknown	SSF47973	Ribosomal protein S7	coord: 2..149 score: 3.66
None	No IPR available	PANTHER	PTHR11205:SF22	30S RIBOSOMAL PROTEIN S7, CHLOROPLASTIC	coord: 1..155 score: 2.4E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G019040	Cucumber (Gy14) v2	cgybcmaB667
CmaCh04G019040	Cucumber (Gy14) v2	cgybcmaB691
CmaCh04G019040	Melon (DHL92) v3.6.1	cmamedB730
CmaCh04G019040	Cucumber (Chinese Long) v3	cmacucB0903
CmaCh04G019040	Watermelon (97103) v2	cmawmbB726
CmaCh04G019040	Watermelon (97103) v2	cmawmbB734
CmaCh04G019040	Wax gourd	cmawgoB0913
CmaCh04G019040	Wax gourd	cmawgoB0876
CmaCh04G019040	Wax gourd	cmawgoB0904
CmaCh04G019040	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G019040	Wild cucumber (PI 183967)	cmacpiB767
CmaCh04G019040	Cucumber (Chinese Long) v2	cmacuB760
CmaCh04G019040	Melon (DHL92) v3.5.1	cmameB646
CmaCh04G019040	Watermelon (Charleston Gray)	cmawcgB622
CmaCh04G019040	Watermelon (Charleston Gray)	cmawcgB628
CmaCh04G019040	Watermelon (97103) v1	cmawmB733
CmaCh04G019040	Watermelon (97103) v1	cmawmB735
CmaCh04G019040	Watermelon (97103) v1	cmawmB739
CmaCh04G019040	Watermelon (97103) v1	cmawmB745
CmaCh04G019040	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G019040	Cucurbita pepo (Zucchini)	cmacpeB725
CmaCh04G019040	Cucurbita pepo (Zucchini)	cmacpeB732
CmaCh04G019040	Bottle gourd (USVL1VR-Ls)	cmalsiB635