CmaCh04G018020 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G018020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RPM1-interacting protein 4 (RIN4) family protein
Location	Cma_Chr04 : 9092217 .. 9092986 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCATATATTGGAAAAAACTGAGGCAACTACTGAGAAAATTAGAAAGGAAAAGGACTTGAACCAGAATATGGTAGTTAAGTTGGAGACTGATTTACAACTATTTCAGAGTTCCTATGTTGAACTTAGTCGTCAACTGGAGACTTGTCAAGCAAATAAAGAAAAGTTAAAAGAAAGGGAGGCGGAAGTTTCATCATTGTGTAATTGTTTGTTGGTGAAAGAACAAGGTAAACCTTTTCTTCTTCATTCTTCAAGTATTTGCAGAATTTTTCCATGATCTTTTAAAAATCTTCTGATGACTTGTTTATATTTTTCTTAGAGGCAGAAGGCTGCGTTTTGTCAACAATGCAAATGGAAGCTCTCTTTGAGAAGGTTAGAAGGATTGAGATCTCTTAGAGGCAGAAAGCTCTCTTTGTTTATATTTTTCTTCATCTTCCTTACTTTTTGCCTTTGTTTTCCTTTTCTGAGACGTTCCTTTTGCAGGCTCAGAAGGGTAATTCTCTGTCCAAATTTGGTGAGTGGGATGAAAAATATCCTGCTCCAGCTGAAGGGATCAGAGTGATCTTCAACAGGGCACGAGTTAATAGTAAGAAAGAAGGAGGAACTCCAACAGATACGTGTTGAGAGCCGTAAGCTAAACAAATGTACTCACAACACCAAAATCACTCGAGACATACAATATTGCACCCAATAAACTTGTTTTTTCAACAGCAGAAAGAATGCCTTCTGCTAAACCTAAAGATAAACTAACCAGCCTAAAAATATTAG

mRNA sequence

ATGCAGCATATATTGGAAAAAACTGAGGCAACTACTGAGAAAATTAGAAAGGAAAAGGACTTGAACCAGAATATGGTAGTTAAGTTGGAGACTGATTTACAACTATTTCAGAGTTCCTATGTTGAACTTAGTCGTCAACTGGAGACTTGTCAAGCAAATAAAGAAAAGTTAAAAGAAAGGGAGGCGGAAGTTTCATCATTGTGTAATTGTTTGTTGGTGAAAGAACAAGAGGCAGAAGGCTGCGTTTTGTCAACAATGCAAATGGAAGCTCTCTTTGAGAAGGCTCAGAAGGGTAATTCTCTGTCCAAATTTGGTGAGTGGGATGAAAAATATCCTGCTCCAGCTGAAGGGATCAGAGTGATCTTCAACAGGGCACGAGTTAATAGTAAGAAAGAAGGAGGAACTCCAACAGATACGTGTTGAGAGCCGTAAGCTAAACAAATGTACTCACAACACCAAAATCACTCGAGACATACAATATTGCACCCAATAAACTTGTTTTTTCAACAGCAGAAAGAATGCCTTCTGCTAAACCTAAAGATAAACTAACCAGCCTAAAAATATTAG

Coding sequence (CDS)

ATGCAGCATATATTGGAAAAAACTGAGGCAACTACTGAGAAAATTAGAAAGGAAAAGGACTTGAACCAGAATATGGTAGTTAAGTTGGAGACTGATTTACAACTATTTCAGAGTTCCTATGTTGAACTTAGTCGTCAACTGGAGACTTGTCAAGCAAATAAAGAAAAGTTAAAAGAAAGGGAGGCGGAAGTTTCATCATTGTGTAATTGTTTGTTGGTGAAAGAACAAGAGGCAGAAGGCTGCGTTTTGTCAACAATGCAAATGGAAGCTCTCTTTGAGAAGGCTCAGAAGGGTAATTCTCTGTCCAAATTTGGTGAGTGGGATGAAAAATATCCTGCTCCAGCTGAAGGGATCAGAGTGATCTTCAACAGGGCACGAGTTAATAGTAAGAAAGAAGGAGGAACTCCAACAGATACGTGTTGA

Protein sequence

MQHILEKTEATTEKIRKEKDLNQNMVVKLETDLQLFQSSYVELSRQLETCQANKEKLKEREAEVSSLCNCLLVKEQEAEGCVLSTMQMEALFEKAQKGNSLSKFGEWDEKYPAPAEGIRVIFNRARVNSKKEGGTPTDTC

Homology

[Close]

BLAST of CmaCh04G018020 vs. TrEMBL
Match: A0A0A0KVD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591760 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-26
Identity = 69/97 (71.13%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 1    MQHILEKTEATTEKIRKEKDLNQNMVVKLETDLQLFQSSYVELSRQLETCQANKEKLKER 60
            MQH LE +EATTEK++ EKDLNQN+V KLETDLQL QS+  E  RQLE CQA +EKLKER
Sbjct: 1427 MQHRLEISEATTEKVKAEKDLNQNLVGKLETDLQLLQSTCDEFKRQLEACQATEEKLKER 1486

Query: 61   EAEVSSLCNCLLVKEQEAEGCVLSTMQMEALFEKAQK 98
            EAE SSL N +LVKEQ+A+ CVLSTMQM+ALFEK ++
Sbjct: 1487 EAEFSSLYNSMLVKEQDAKDCVLSTMQMKALFEKVRR 1523

[Close]

BLAST of CmaCh04G018020 vs. TrEMBL
Match: F6HG32_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02180 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.9e-11
Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 1


Query: 1    MQHILEKTEATTEKIRKEKDLNQNMVVKLETDLQLFQSSYVELSRQLETCQANKEKLKER 60
            +Q+ L++   T+EK  +E+D+NQ  V KLE D +  Q+   ++  +LE  Q  +EKLK R
Sbjct: 1379 LQNELDEMRTTSEKAIEERDINQKRVSKLEADAEALQNQCNDMKLRLEDYQEIEEKLKAR 1438

Query: 61   EAEVSSLCNCLLVKEQEAEGCVLSTMQMEALFEKAQKGNSLSKFGEWDEKYPAPAEGIRV 120
            EAE SS  N +L+KE+E EG +LS  Q++ALF+K  +        E +E  P  A  ++ 
Sbjct: 1439 EAEFSSFSNQVLMKEREVEGSLLSASQVKALFDKIDEIKIPFAESEAEELEPPNAVYVKK 1498

Query: 121  IFN 124
            +F+
Sbjct: 1499 LFH 1501

[Close]

BLAST of CmaCh04G018020 vs. TrEMBL
Match: V4TDM4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030479mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-09
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 1


Query: 1    MQHILEKTEATTEKIRKEKDLNQNMVVKLETDLQLFQSSYVELSRQLETCQANKEKLKER 60
            +Q  L+ T    EK++ E+DL+QN V KLE+D+   + S  EL  ++E  +A +EKLKE 
Sbjct: 1433 LQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVEDLEAKEEKLKEN 1492

Query: 61   EAEVSSLCNCLLVKEQEAEGCVLSTMQMEALFEK 95
            EAE+S L + L  KEQEAEG  LS +Q+  L +K
Sbjct: 1493 EAEISLLYDRLSRKEQEAEGLFLSPLQIRKLVDK 1526

[Close]

BLAST of CmaCh04G018020 vs. TrEMBL
Match: V4TNI2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030479mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-09
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 1


Query: 1    MQHILEKTEATTEKIRKEKDLNQNMVVKLETDLQLFQSSYVELSRQLETCQANKEKLKER 60
            +Q  L+ T    EK++ E+DL+QN V KLE+D+   + S  EL  ++E  +A +EKLKE 
Sbjct: 1433 LQKKLQDTTTAYEKVKDERDLHQNKVSKLESDVDALEHSCKELRLKVEDLEAKEEKLKEN 1492

Query: 61   EAEVSSLCNCLLVKEQEAEGCVLSTMQMEALFEK 95
            EAE+S L + L  KEQEAEG  LS +Q+  L +K
Sbjct: 1493 EAEISLLYDRLSRKEQEAEGLFLSPLQIRKLVDK 1526

[Close]

BLAST of CmaCh04G018020 vs. TrEMBL
Match: V7D204_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G257700g PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.2e-09
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = 1


Query: 1    MQHILEKTEATTEKIRKEKDLNQNMVVKLETDLQLFQSSYVELSRQLETCQANKEKLKER 60
            +Q+ L++     E +  ++DLN+N V +LE+D+Q  QS+  EL  +L++C A +EKL E+
Sbjct: 1495 LQNKLKEATVAFESVTDDRDLNKNRVSQLESDIQSLQSACSELKDKLQSCHALEEKLNEK 1554

Query: 61   EAEVSSLCNCLLVKEQEAEGCVLSTMQMEALFEKAQK 98
            EAE+SS+ N LL KE   E  +L++ QM  LFEK  +
Sbjct: 1555 EAEISSMHNVLLAKE---ENSLLTSSQMRDLFEKIDR 1588

[Close]

BLAST of CmaCh04G018020 vs. TAIR10
Match: AT5G55850.2 (AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 51.6 bits (122), Expect = 4.5e-07
Identity = 26/45 (57.78%), Postives = 29/45 (64.44%), Query Frame = 1


Query: 92  FEKAQKGNSLSKFGEWDEKYPAPAEGIRVIFNRARVNSKKEGGTP 137
           F+   KG  L KFGEWD   PA AEG  VIFN+AR + KK GG P
Sbjct: 15  FDWRDKGRPLPKFGEWDVNDPASAEGFTVIFNKAR-DEKKTGGKP 58

[Close]

BLAST of CmaCh04G018020 vs. TAIR10
Match: AT2G04410.1 (AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-06
Identity = 25/40 (62.50%), Postives = 27/40 (67.50%), Query Frame = 1


Query: 95  AQKGNSLSKFGEWDEKYPAPAEGIRVIFNRARVNSKKEGG 135
           A KG  L KFGEWD   P+ AEG  VIFN+AR N KK GG
Sbjct: 2   ADKGRPLPKFGEWDVNDPSSAEGFTVIFNKAR-NEKKGGG 40

[Close]

BLAST of CmaCh04G018020 vs. NCBI nr
Match: gi|659090600|ref|XP_008446100.1| (PREDICTED: coiled-coil domain-containing protein 18 isoform X2 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 8.3e-27
Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 1    MQHILEKTEATTEKIRKEKDLNQNMVVKLETDLQLFQSSYVELSRQLETCQANKEKLKER 60
            MQH LE TEATTEK+R EKDLNQNMV KLETD QL QS++ EL RQLE  QA +EKLKER
Sbjct: 1408 MQHRLEITEATTEKVRAEKDLNQNMVGKLETDFQLLQSTFGELRRQLEASQATEEKLKER 1467

Query: 61   EAEVSSLCNCLLVKEQEAEGCVLSTMQMEALFEKAQK 98
            EAEVSSL N +LVK Q+AE CVLSTMQM+ALFEK ++
Sbjct: 1468 EAEVSSLYNSMLVKGQDAEDCVLSTMQMKALFEKVRR 1504

[Close]

BLAST of CmaCh04G018020 vs. NCBI nr
Match: gi|659090602|ref|XP_008446101.1| (PREDICTED: WEB family protein At4g27595, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 8.3e-27
Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 1    MQHILEKTEATTEKIRKEKDLNQNMVVKLETDLQLFQSSYVELSRQLETCQANKEKLKER 60
            MQH LE TEATTEK+R EKDLNQNMV KLETD QL QS++ EL RQLE  QA +EKLKER
Sbjct: 1336 MQHRLEITEATTEKVRAEKDLNQNMVGKLETDFQLLQSTFGELRRQLEASQATEEKLKER 1395

Query: 61   EAEVSSLCNCLLVKEQEAEGCVLSTMQMEALFEKAQK 98
            EAEVSSL N +LVK Q+AE CVLSTMQM+ALFEK ++
Sbjct: 1396 EAEVSSLYNSMLVKGQDAEDCVLSTMQMKALFEKVRR 1432

[Close]

BLAST of CmaCh04G018020 vs. NCBI nr
Match: gi|659090598|ref|XP_008446099.1| (PREDICTED: WEB family protein At4g27595, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 8.3e-27
Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 1    MQHILEKTEATTEKIRKEKDLNQNMVVKLETDLQLFQSSYVELSRQLETCQANKEKLKER 60
            MQH LE TEATTEK+R EKDLNQNMV KLETD QL QS++ EL RQLE  QA +EKLKER
Sbjct: 1431 MQHRLEITEATTEKVRAEKDLNQNMVGKLETDFQLLQSTFGELRRQLEASQATEEKLKER 1490

Query: 61   EAEVSSLCNCLLVKEQEAEGCVLSTMQMEALFEKAQK 98
            EAEVSSL N +LVK Q+AE CVLSTMQM+ALFEK ++
Sbjct: 1491 EAEVSSLYNSMLVKGQDAEDCVLSTMQMKALFEKVRR 1527

[Close]

BLAST of CmaCh04G018020 vs. NCBI nr
Match: gi|778704776|ref|XP_011655589.1| (PREDICTED: myosin-10 isoform X2 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 4.1e-26
Identity = 69/97 (71.13%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 1    MQHILEKTEATTEKIRKEKDLNQNMVVKLETDLQLFQSSYVELSRQLETCQANKEKLKER 60
            MQH LE +EATTEK++ EKDLNQN+V KLETDLQL QS+  E  RQLE CQA +EKLKER
Sbjct: 1404 MQHRLEISEATTEKVKAEKDLNQNLVGKLETDLQLLQSTCDEFKRQLEACQATEEKLKER 1463

Query: 61   EAEVSSLCNCLLVKEQEAEGCVLSTMQMEALFEKAQK 98
            EAE SSL N +LVKEQ+A+ CVLSTMQM+ALFEK ++
Sbjct: 1464 EAEFSSLYNSMLVKEQDAKDCVLSTMQMKALFEKVRR 1500

[Close]

BLAST of CmaCh04G018020 vs. NCBI nr
Match: gi|778704772|ref|XP_011655588.1| (PREDICTED: myosin-10 isoform X1 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 4.1e-26
Identity = 69/97 (71.13%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 1    MQHILEKTEATTEKIRKEKDLNQNMVVKLETDLQLFQSSYVELSRQLETCQANKEKLKER 60
            MQH LE +EATTEK++ EKDLNQN+V KLETDLQL QS+  E  RQLE CQA +EKLKER
Sbjct: 1427 MQHRLEISEATTEKVKAEKDLNQNLVGKLETDLQLLQSTCDEFKRQLEACQATEEKLKER 1486

Query: 61   EAEVSSLCNCLLVKEQEAEGCVLSTMQMEALFEKAQK 98
            EAE SSL N +LVKEQ+A+ CVLSTMQM+ALFEK ++
Sbjct: 1487 EAEFSSLYNSMLVKEQDAKDCVLSTMQMKALFEKVRR 1523

The following BLAST results are available for this feature:

BLAST of CmaCh04G018020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G018020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVD0_CUCSA	2.9e-26	71.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G591760 PE=4 SV=1	[more]
F6HG32_VITVI	9.9e-11	38.21	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g02180 PE=4 SV=...	[more]
V4TDM4_9ROSI	1.9e-09	45.74	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030479mg PE=4 SV=1	[more]
V4TNI2_9ROSI	1.9e-09	45.74	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030479mg PE=4 SV=1	[more]
V7D204_PHAVU	4.2e-09	42.27	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G257700g PE=4 SV=1	[more]

BLAST of CmaCh04G018020 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G55850.2	4.5e-07	57.78	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	1.7e-06	62.50	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of CmaCh04G018020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090600\|ref\|XP_008446100.1\|	8.3e-27	74.23	PREDICTED: coiled-coil domain-containing protein 18 isoform X2 [Cucumis melo]	[more]
gi\|659090602\|ref\|XP_008446101.1\|	8.3e-27	74.23	PREDICTED: WEB family protein At4g27595, chloroplastic isoform X3 [Cucumis melo]	[more]
gi\|659090598\|ref\|XP_008446099.1\|	8.3e-27	74.23	PREDICTED: WEB family protein At4g27595, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|778704776\|ref\|XP_011655589.1\|	4.1e-26	71.13	PREDICTED: myosin-10 isoform X2 [Cucumis sativus]	[more]
gi\|778704772\|ref\|XP_011655588.1\|	4.1e-26	71.13	PREDICTED: myosin-10 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G018020.1	CmaCh04G018020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 96..126 score: 4.
None	No IPR available	unknown	Coil	Coil	coord: 40..60 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G018020	Cucsa.075350	Cucumber (Gy14) v1	cgycmaB0126
CmaCh04G018020	Cla010000	Watermelon (97103) v1	cmawmB700
CmaCh04G018020	Csa5G591760	Cucumber (Chinese Long) v2	cmacuB749
CmaCh04G018020	ClCG05G026190	Watermelon (Charleston Gray)	cmawcgB656
CmaCh04G018020	CSPI05G21780	Wild cucumber (PI 183967)	cmacpiB758
CmaCh04G018020	CmoCh18G007130	Cucurbita moschata (Rifu)	cmacmoB711
CmaCh04G018020	Cp4.1LG09g06200	Cucurbita pepo (Zucchini)	cmacpeB694
CmaCh04G018020	Cp4.1LG01g15870	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G018020	CsaV3_5G030650	Cucumber (Chinese Long) v3	cmacucB0886
CmaCh04G018020	Cla97C05G108390	Watermelon (97103) v2	cmawmbB759
CmaCh04G018020	Bhi07G001490	Wax gourd	cmawgoB0891
CmaCh04G018020	CsGy5G021290	Cucumber (Gy14) v2	cgybcmaB675
CmaCh04G018020	Carg14289	Silver-seed gourd	carcmaB0339
CmaCh04G018020	Carg21257	Silver-seed gourd	carcmaB0971

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G018020	CmaCh18G007260	Cucurbita maxima (Rimu)	cmacmaB404

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G018020	Cucumber (Gy14) v2	cgybcmaB244
CmaCh04G018020	Melon (DHL92) v3.6.1	cmamedB727
CmaCh04G018020	Melon (DHL92) v3.6.1	cmamedB764
CmaCh04G018020	Silver-seed gourd	carcmaB0706
CmaCh04G018020	Silver-seed gourd	carcmaB0884
CmaCh04G018020	Cucumber (Chinese Long) v3	cmacucB0823
CmaCh04G018020	Watermelon (97103) v2	cmawmbB789
CmaCh04G018020	Wax gourd	cmawgoB0872
CmaCh04G018020	Cucurbita maxima (Rimu)	cmacmaB189
CmaCh04G018020	Cucurbita maxima (Rimu)	cmacmaB540
CmaCh04G018020	Cucumber (Gy14) v1	cgycmaB1093
CmaCh04G018020	Cucurbita moschata (Rifu)	cmacmoB680
CmaCh04G018020	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G018020	Cucurbita moschata (Rifu)	cmacmoB747
CmaCh04G018020	Wild cucumber (PI 183967)	cmacpiB700
CmaCh04G018020	Cucumber (Chinese Long) v2	cmacuB692
CmaCh04G018020	Melon (DHL92) v3.5.1	cmameB641
CmaCh04G018020	Melon (DHL92) v3.5.1	cmameB681
CmaCh04G018020	Watermelon (Charleston Gray)	cmawcgB681
CmaCh04G018020	Watermelon (97103) v1	cmawmB670
CmaCh04G018020	Cucurbita pepo (Zucchini)	cmacpeB704
CmaCh04G018020	Cucurbita pepo (Zucchini)	cmacpeB756
CmaCh04G018020	Bottle gourd (USVL1VR-Ls)	cmalsiB670
CmaCh04G018020	Bottle gourd (USVL1VR-Ls)	cmalsiB704