CmaCh04G017690 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G017690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPlant intracellular ras group-related LRR 3, putative
LocationCma_Chr04 : 8886784 .. 8887636 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGATTGCTTTATAATTTTCTTAAACTGGGCTTCAGAAACTCCAGTGCCTTGATATTTCTTCGAATCTTTTGGAGTCTCTTCCTGATTCTATCAGCCTATTGGTTAATTGAAGGTCGTCAACGTATCAGGAAACAAACTGAACTTCCTGAAACCCTACTGGTTGCAGGTAACTAAATCAGTAGTCTTTGGCTTCCTTTTCAACAGCACATGGAAAATGATGTTCATTGTGCCGAGTTTTGAATATTTTGATTCGTTGGTGGAGTTGGATGCAAGTTTCAACAATCTGCGAAGTTTACCTATAAGTATTTGGATATGGATTGGTTAATCTTGAATGGCTATCAATCCAAGATATGTTACCTTCATACATCGATGTCAGCTTAGGTCTTTAAGATTTGGCCTGCCTCCGGTCATTGGAAGGTTAACGAGTCATGAGGTGTTGATTCTCAGTGGTAATTTCAACAACTTGACTGAGGTTACTGAATCAACTAGTGATCTCTGCAACCTAAGGGAGCTAGATCTTAGTGATAACCAGATAAGAGCTCTTCCAGACAGATTTGGCCGGCTGAAAAAACTAATAAACTGATTATGGATCAAAATCCGCGTCTGATTTCTCCAAAGGAAATTGTTGACAAAGGGGCCCAAGCAGTGAAGGATTTCATGGACATTGGAAGGGCGATTTAGATGCAGAAAACAGAAGGCCATGCATGAGGCAAACATGCCTGAAGATCAGAGTGGATGGCTTACTTGGGGATCCTCCATGTTGTCTAACGTAACTTCTGGGGTTGTACAAACTATTTCTGAATATACAGGAGGAAGGAACGAAACTTCCAAGGACCCATGGTTGTATCAATAG

mRNA sequence

CGATTGCTTTATAATTTTCTTAAACTGGGCTTCAGAAACTCCAGTGCCTTGATATTTCTTCGAATCTTTTGGAGTCTCTTCCTGATTCTATCAGCCTATTGGTTAATTGAAGGTCGTCAACGTATCAGGAAACAAACTGAACTTCCTGAAACCCTACTGGTTGCAGGGCGATTTAGATGCAGAAAACAGAAGGCCATGCATGAGGCAAACATGCCTGAAGATCAGAGTGGATGGCTTACTTGGGGATCCTCCATGTTGTCTAACGTAACTTCTGGGGTTGTACAAACTATTTCTGAATATACAGGAGGAAGGAACGAAACTTCCAAGGACCCATGGTTGTATCAATAG

Coding sequence (CDS)

CGATTGCTTTATAATTTTCTTAAACTGGGCTTCAGAAACTCCAGTGCCTTGATATTTCTTCGAATCTTTTGGAGTCTCTTCCTGATTCTATCAGCCTATTGGTTAATTGAAGGTCGTCAACGTATCAGGAAACAAACTGAACTTCCTGAAACCCTACTGGTTGCAGGGCGATTTAGATGCAGAAAACAGAAGGCCATGCATGAGGCAAACATGCCTGAAGATCAGAGTGGATGGCTTACTTGGGGATCCTCCATGTTGTCTAACGTAACTTCTGGGGTTGTACAAACTATTTCTGAATATACAGGAGGAAGGAACGAAACTTCCAAGGACCCATGGTTGTATCAATAG

Protein sequence

RLLYNFLKLGFRNSSALIFLRIFWSLFLILSAYWLIEGRQRIRKQTELPETLLVAGRFRCRKQKAMHEANMPEDQSGWLTWGSSMLSNVTSGVVQTISEYTGGRNETSKDPWLYQ
Homology
[Close]
BLAST of CmaCh04G017690 vs. TrEMBL
Match: A0A0A0KQ50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598610 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 37  EGRQRIRKQTELPETLLVAGRFRCRKQKAMHEANMPEDQSGWLTWGSSMLSNVTSGVVQT 96
           +G Q ++   ++    LVA      KQK+MHEANM E QSGWLTWGSSML+NVTSGVVQT
Sbjct: 426 KGAQAVKDFMDMRWADLVA-----EKQKSMHEANMAEKQSGWLTWGSSMLANVTSGVVQT 485

Query: 97  ISEYTGGRNETSKDPWLYQ 116
           IS+YTGGRNE  KDPWLYQ
Sbjct: 486 ISDYTGGRNENPKDPWLYQ 499

[Close]
BLAST of CmaCh04G017690 vs. NCBI nr
Match: gi|449434977|ref|XP_004135272.1| (PREDICTED: plant intracellular Ras-group-related LRR protein 3 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 8.1e-20
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 37  EGRQRIRKQTELPETLLVAGRFRCRKQKAMHEANMPEDQSGWLTWGSSMLSNVTSGVVQT 96
           +G Q ++   ++    LVA      KQK+MHEANM E QSGWLTWGSSML+NVTSGVVQT
Sbjct: 426 KGAQAVKDFMDMRWADLVA-----EKQKSMHEANMAEKQSGWLTWGSSMLANVTSGVVQT 485

Query: 97  ISEYTGGRNETSKDPWLYQ 116
           IS+YTGGRNE  KDPWLYQ
Sbjct: 486 ISDYTGGRNENPKDPWLYQ 499

[Close]
BLAST of CmaCh04G017690 vs. NCBI nr
Match: gi|659090709|ref|XP_008446159.1| (PREDICTED: plant intracellular Ras-group-related LRR protein 3 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 37  EGRQRIRKQTELPETLLVAGRFRCRKQKAMHEANMPEDQSGWLTWGSSMLSNVTSGVVQT 96
           +G Q ++   ++    LVA      KQK MHEANM E+QSGWLTWGSSML++VTSGVVQT
Sbjct: 426 KGAQAVKDFMDMRWADLVA-----EKQKNMHEANMAEEQSGWLTWGSSMLASVTSGVVQT 485

Query: 97  ISEYTGGRNETSKDPWLYQ 116
           IS+YTGGR+E  KDPWLYQ
Sbjct: 486 ISDYTGGRDENRKDPWLYQ 499

The following BLAST results are available for this feature:
BLAST of CmaCh04G017690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G017690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ50_CUCSA5.6e-2065.82Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598610 PE=4 SV=1[more]
BLAST of CmaCh04G017690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G017690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434977|ref|XP_004135272.1|8.1e-2065.82PREDICTED: plant intracellular Ras-group-related LRR protein 3 [Cucumis sativus][more]
gi|659090709|ref|XP_008446159.1|1.2e-1863.29PREDICTED: plant intracellular Ras-group-related LRR protein 3 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0006470 protein dephosphorylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004721 phosphoprotein phosphatase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G017690.1CmaCh04G017690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G017690CmoCh18G007690Cucurbita moschata (Rifu)cmacmoB710
CmaCh04G017690CmoCh04G018590Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G017690Lsi04G005930Bottle gourd (USVL1VR-Ls)cmalsiB670
CmaCh04G017690Cp4.1LG01g15750Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G017690Cp4.1LG09g05330Cucurbita pepo (Zucchini)cmacpeB694
CmaCh04G017690MELO3C011948.2Melon (DHL92) v3.6.1cmamedB727
CmaCh04G017690CsaV3_5G031080Cucumber (Chinese Long) v3cmacucB0886
CmaCh04G017690Cla97C05G108010Watermelon (97103) v2cmawmbB759
CmaCh04G017690Bhi07G001434Wax gourdcmawgoB0891
CmaCh04G017690CsGy5G021720Cucumber (Gy14) v2cgybcmaB675
CmaCh04G017690Carg14498Silver-seed gourdcarcmaB1013
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh04G017690CmaCh18G007660Cucurbita maxima (Rimu)cmacmaB404
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G017690Cucurbita pepo (Zucchini)cmacpeB704
CmaCh04G017690Cucurbita pepo (Zucchini)cmacpeB756
CmaCh04G017690Bottle gourd (USVL1VR-Ls)cmalsiB704
CmaCh04G017690Cucumber (Gy14) v2cgybcmaB244
CmaCh04G017690Melon (DHL92) v3.6.1cmamedB764
CmaCh04G017690Silver-seed gourdcarcmaB0339
CmaCh04G017690Silver-seed gourdcarcmaB0706
CmaCh04G017690Silver-seed gourdcarcmaB0884
CmaCh04G017690Cucumber (Chinese Long) v3cmacucB0823
CmaCh04G017690Watermelon (97103) v2cmawmbB789
CmaCh04G017690Wax gourdcmawgoB0863
CmaCh04G017690Cucurbita maxima (Rimu)cmacmaB189
CmaCh04G017690Cucurbita maxima (Rimu)cmacmaB540
CmaCh04G017690Cucumber (Gy14) v1cgycmaB0802
CmaCh04G017690Cucumber (Gy14) v1cgycmaB1093
CmaCh04G017690Cucurbita moschata (Rifu)cmacmoB680
CmaCh04G017690Cucurbita moschata (Rifu)cmacmoB747
CmaCh04G017690Wild cucumber (PI 183967)cmacpiB700
CmaCh04G017690Wild cucumber (PI 183967)cmacpiB758
CmaCh04G017690Cucumber (Chinese Long) v2cmacuB692
CmaCh04G017690Cucumber (Chinese Long) v2cmacuB749
CmaCh04G017690Melon (DHL92) v3.5.1cmameB641
CmaCh04G017690Melon (DHL92) v3.5.1cmameB681
CmaCh04G017690Watermelon (Charleston Gray)cmawcgB656
CmaCh04G017690Watermelon (Charleston Gray)cmawcgB681
CmaCh04G017690Watermelon (97103) v1cmawmB670
CmaCh04G017690Watermelon (97103) v1cmawmB700