CmaCh04G017420 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G017420
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal protein S27a, component of cytosolic 80S ribosome and 40S small subunit
Location	Cma_Chr04 : 8754508 .. 8754978 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTCGAGGTCGAGAGCTCCGATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAGCGTTTGATTTTCGCTGGAAAGCAGCTGGAGGACGGCCGAACTCTTGCCGACTACAATATCCAGAAGGAATCCACGCTGCACCTTGTGCTTCGTCTTAGGGGAGGCGCCAAGAAGCGAAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCATAAGAAGGTCAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTCAGGAAGGAGTGCCCTAATGCCGAGTGCGGTGCTGGGACTTTCATGGCCAACCACTTTGATCGCCACTACTGCGGCAAATGTGGTTTGACCTACGTTTACAACAAAGCTGGTGGTGATTAG

mRNA sequence

ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTCGAGGTCGAGAGCTCCGATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAGCGTTTGATTTTCGCTGGAAAGCAGCTGGAGGACGGCCGAACTCTTGCCGACTACAATATCCAGAAGGAATCCACGCTGCACCTTGTGCTTCGTCTTAGGGGAGGCGCCAAGAAGCGAAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCATAAGAAGGTCAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTCAGGAAGGAGTGCCCTAATGCCGAGTGCGGTGCTGGGACTTTCATGGCCAACCACTTTGATCGCCACTACTGCGGCAAATGTGGTTTGACCTACGTTTACAACAAAGCTGGTGGTGATTAG

Coding sequence (CDS)

ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTCGAGGTCGAGAGCTCCGATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAGCGTTTGATTTTCGCTGGAAAGCAGCTGGAGGACGGCCGAACTCTTGCCGACTACAATATCCAGAAGGAATCCACGCTGCACCTTGTGCTTCGTCTTAGGGGAGGCGCCAAGAAGCGAAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCATAAGAAGGTCAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTCAGGAAGGAGTGCCCTAATGCCGAGTGCGGTGCTGGGACTTTCATGGCCAACCACTTTGATCGCCACTACTGCGGCAAATGTGGTTTGACCTACGTTTACAACAAAGCTGGTGGTGATTAG

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD

Homology

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BLAST of CmaCh04G017420 vs. Swiss-Prot
Match: RS27A_SOLTU (Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=2 SV=2)

HSP 1 Score: 308.1 bits (788), Expect = 5.3e-83
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVDD+GKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CmaCh04G017420 vs. Swiss-Prot
Match: RS27A_SOLLC (Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=2)

HSP 1 Score: 308.1 bits (788), Expect = 5.3e-83
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVDD+GKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

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BLAST of CmaCh04G017420 vs. Swiss-Prot
Match: RS27A_LUPAL (Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=2)

HSP 1 Score: 300.1 bits (767), Expect = 1.5e-80
Identity = 150/153 (98.04%), Postives = 150/153 (98.04%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA 154
           CPN ECGAGTFMANHFDRHYCGKCG TYVY KA
Sbjct: 121 CPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 153

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BLAST of CmaCh04G017420 vs. Swiss-Prot
Match: R27AB_ARATH (Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=RPS27AB PE=1 SV=2)

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-79
Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

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BLAST of CmaCh04G017420 vs. Swiss-Prot
Match: R27AC_ARATH (Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=RPS27AC PE=1 SV=2)

HSP 1 Score: 296.6 bits (758), Expect = 1.6e-79
Identity = 148/154 (96.10%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYK+D SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

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BLAST of CmaCh04G017420 vs. TrEMBL
Match: A0A0A0KVL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G600925 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.4e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 33  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 92

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 93  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 152

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 153 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 188

[Close]

BLAST of CmaCh04G017420 vs. TrEMBL
Match: Q6UCJ3_CUCSA (Ubiquitin extension protein OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.4e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CmaCh04G017420 vs. TrEMBL
Match: A0MKC8_CAPAN (Ubiquitin extension protein OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.4e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 24  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 83

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 84  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 143

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 144 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 179

[Close]

BLAST of CmaCh04G017420 vs. TrEMBL
Match: E5GBI4_CUCME (Ubiquitin extension protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.4e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CmaCh04G017420 vs. TrEMBL
Match: G8H5D0_ROSMU (Ubiquitin extension protein OS=Rosa multiflora PE=2 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 2.7e-81
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQ+LRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQKLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 156

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BLAST of CmaCh04G017420 vs. TAIR10
Match: AT2G47110.1 (AT2G47110.1 ubiquitin 6)

HSP 1 Score: 297.0 bits (759), Expect = 6.9e-81
Identity = 149/154 (96.75%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]

BLAST of CmaCh04G017420 vs. TAIR10
Match: AT3G62250.1 (AT3G62250.1 ubiquitin 5)

HSP 1 Score: 296.6 bits (758), Expect = 9.0e-81
Identity = 148/154 (96.10%), Postives = 150/154 (97.40%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYK+D SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]

BLAST of CmaCh04G017420 vs. TAIR10
Match: AT1G23410.1 (AT1G23410.1 Ribosomal protein S27a / Ubiquitin family protein)

HSP 1 Score: 285.0 bits (728), Expect = 2.7e-77
Identity = 142/153 (92.81%), Postives = 146/153 (95.42%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKH HKKVKLAVLQFYKVD SGKVQRL+KE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKVQRLKKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA 154
           CP+  CG GTFMA+HFDRHYCGKCG TYV+ KA
Sbjct: 121 CPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 153

[Close]

BLAST of CmaCh04G017420 vs. TAIR10
Match: AT5G20620.1 (AT5G20620.1 ubiquitin 4)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364

Query: 61  IQKESTLHLVLRLRGGA 78
           IQKESTLHLVLRLRGG+
Sbjct: 365 IQKESTLHLVLRLRGGS 381

[Close]

BLAST of CmaCh04G017420 vs. TAIR10
Match: AT5G03240.1 (AT5G03240.1 polyubiquitin 3)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGA 78
           IQKESTLHLVLRLRGG+
Sbjct: 289 IQKESTLHLVLRLRGGS 305

[Close]

BLAST of CmaCh04G017420 vs. NCBI nr
Match: gi|700196614|gb|KGN51791.1| (hypothetical protein Csa_5G600925 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 3.5e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 33  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 92

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 93  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 152

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 153 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 188

[Close]

BLAST of CmaCh04G017420 vs. NCBI nr
Match: gi|532691794|ref|NP_001269170.1| (ubiquitin-40S ribosomal protein S27a-like [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 3.5e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]

BLAST of CmaCh04G017420 vs. NCBI nr
Match: gi|117607067|gb|ABK42077.1| (ubiquitin extension protein [Capsicum annuum])

HSP 1 Score: 312.8 bits (800), Expect = 3.5e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 24  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 83

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 84  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 143

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 144 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 179

[Close]

BLAST of CmaCh04G017420 vs. NCBI nr
Match: gi|657994732|ref|XP_008389677.1| (PREDICTED: ubiquitin-40S ribosomal protein S27a [Malus domestica])

HSP 1 Score: 310.5 bits (794), Expect = 1.7e-81
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 156

[Close]

BLAST of CmaCh04G017420 vs. NCBI nr
Match: gi|747071106|ref|XP_011082406.1| (PREDICTED: ubiquitin-40S ribosomal protein S27a [Sesamum indicum])

HSP 1 Score: 309.3 bits (791), Expect = 3.8e-81
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 1


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

The following BLAST results are available for this feature:

BLAST of CmaCh04G017420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS27A_SOLTU	5.3e-83	98.72	Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=2 SV=2	[more]
RS27A_SOLLC	5.3e-83	98.72	Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=2	[more]
RS27A_LUPAL	1.5e-80	98.04	Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=2	[more]
R27AB_ARATH	1.2e-79	96.75	Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=RPS27AB PE=1 S...	[more]
R27AC_ARATH	1.6e-79	96.10	Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=RPS27AC PE=1 S...	[more]

BLAST of CmaCh04G017420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVL0_CUCSA	2.4e-82	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G600925 PE=4 SV=1	[more]
Q6UCJ3_CUCSA	2.4e-82	100.00	Ubiquitin extension protein OS=Cucumis sativus PE=2 SV=1	[more]
A0MKC8_CAPAN	2.4e-82	100.00	Ubiquitin extension protein OS=Capsicum annuum PE=2 SV=1	[more]
E5GBI4_CUCME	2.4e-82	100.00	Ubiquitin extension protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
G8H5D0_ROSMU	2.7e-81	98.72	Ubiquitin extension protein OS=Rosa multiflora PE=2 SV=1	[more]

BLAST of CmaCh04G017420 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47110.1	6.9e-81	96.75	ubiquitin 6	[more]
AT3G62250.1	9.0e-81	96.10	ubiquitin 5	[more]
AT1G23410.1	2.7e-77	92.81	Ribosomal protein S27a / Ubiquitin family protein	[more]
AT5G20620.1	1.4e-36	98.70	ubiquitin 4	[more]
AT5G03240.1	1.4e-36	98.70	polyubiquitin 3	[more]

BLAST of CmaCh04G017420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196614\|gb\|KGN51791.1\|	3.5e-82	100.00	hypothetical protein Csa_5G600925 [Cucumis sativus]	[more]
gi\|532691794\|ref\|NP_001269170.1\|	3.5e-82	100.00	ubiquitin-40S ribosomal protein S27a-like [Cucumis sativus]	[more]
gi\|117607067\|gb\|ABK42077.1\|	3.5e-82	100.00	ubiquitin extension protein [Capsicum annuum]	[more]
gi\|657994732\|ref\|XP_008389677.1\|	1.7e-81	99.36	PREDICTED: ubiquitin-40S ribosomal protein S27a [Malus domestica]	[more]
gi\|747071106\|ref\|XP_011082406.1\|	3.8e-81	99.36	PREDICTED: ubiquitin-40S ribosomal protein S27a [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom
IPR002906	Ribosomal_S27a
IPR011332	Ribosomal_zn-bd
IPR019954	Ubiquitin_CS
IPR019956	Ubiquitin

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G017420.1	CmaCh04G017420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 3..74 score: 3.6
IPR000626	Ubiquitin domain	SMART	SM00213	ubq_7	coord: 1..72 score: 3.0
IPR000626	Ubiquitin domain	PROFILE	PS50053	UBIQUITIN_2	coord: 1..76 score: 30
IPR002906	Ribosomal protein S27a	PFAM	PF01599	Ribosomal_S27	coord: 102..147 score: 1.4
IPR002906	Ribosomal protein S27a	SMART	SM01402	Ribosomal_S27_2	coord: 102..147 score: 3.1
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 100..153 score: 6.04
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 27..52 scor
IPR019956	Ubiquitin	PRINTS	PR00348	UBIQUITIN	coord: 11..31 score: 6.1E-39coord: 53..74 score: 6.1E-39coord: 32..52 score: 6.1
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 1..88 score: 6.8
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..154 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G017420	Cucsa.394340	Cucumber (Gy14) v1	cgycmaB1093
CmaCh04G017420	Cucsa.286200	Cucumber (Gy14) v1	cgycmaB0802
CmaCh04G017420	MELO3C011983	Melon (DHL92) v3.5.1	cmameB641
CmaCh04G017420	ClCG05G025470	Watermelon (Charleston Gray)	cmawcgB656
CmaCh04G017420	ClCG08G017880	Watermelon (Charleston Gray)	cmawcgB681
CmaCh04G017420	CSPI05G22550	Wild cucumber (PI 183967)	cmacpiB758
CmaCh04G017420	CSPI02G17140	Wild cucumber (PI 183967)	cmacpiB700
CmaCh04G017420	CmoCh18G007920	Cucurbita moschata (Rifu)	cmacmoB710
CmaCh04G017420	CmoCh05G000300	Cucurbita moschata (Rifu)	cmacmoB747
CmaCh04G017420	CmoCh04G018280	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G017420	Cp4.1LG01g15420	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G017420	MELO3C011983.2	Melon (DHL92) v3.6.1	cmamedB727
CmaCh04G017420	CsaV3_5G031430	Cucumber (Chinese Long) v3	cmacucB0886
CmaCh04G017420	Cla97C05G107640	Watermelon (97103) v2	cmawmbB759
CmaCh04G017420	Cla97C08G161630	Watermelon (97103) v2	cmawmbB789
CmaCh04G017420	Bhi04G000545	Wax gourd	cmawgoB0863
CmaCh04G017420	Bhi07G001395	Wax gourd	cmawgoB0891

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G017420	CmaCh18G007900	Cucurbita maxima (Rimu)	cmacmaB404
CmaCh04G017420	CmaCh05G000230	Cucurbita maxima (Rimu)	cmacmaB540

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G017420	Silver-seed gourd	carcmaB0339
CmaCh04G017420	Silver-seed gourd	carcmaB0706
CmaCh04G017420	Silver-seed gourd	carcmaB1013
CmaCh04G017420	Cucumber (Chinese Long) v3	cmacucB0823
CmaCh04G017420	Cucurbita maxima (Rimu)	cmacmaB189
CmaCh04G017420	Cucurbita moschata (Rifu)	cmacmoB680
CmaCh04G017420	Cucumber (Chinese Long) v2	cmacuB692
CmaCh04G017420	Cucumber (Chinese Long) v2	cmacuB749
CmaCh04G017420	Melon (DHL92) v3.5.1	cmameB681
CmaCh04G017420	Watermelon (97103) v1	cmawmB649
CmaCh04G017420	Watermelon (97103) v1	cmawmB700
CmaCh04G017420	Cucurbita pepo (Zucchini)	cmacpeB694
CmaCh04G017420	Cucurbita pepo (Zucchini)	cmacpeB704
CmaCh04G017420	Cucurbita pepo (Zucchini)	cmacpeB756
CmaCh04G017420	Bottle gourd (USVL1VR-Ls)	cmalsiB670
CmaCh04G017420	Bottle gourd (USVL1VR-Ls)	cmalsiB704
CmaCh04G017420	Cucumber (Gy14) v2	cgybcmaB244
CmaCh04G017420	Cucumber (Gy14) v2	cgybcmaB675
CmaCh04G017420	Melon (DHL92) v3.6.1	cmamedB764