CmaCh04G017230 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G017230
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description50S ribosomal protein L23, chloroplastic
LocationCma_Chr04 : 8665839 .. 8666100 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCCCAAGAAAGGGTAGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATGGACTCCCAAGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACGACGTATGATCATTACACTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATATTTCATCATATCCGGGATGTGATATGGTTCTGAAGATATCTGGGATGTGA

mRNA sequence

ATGGACTCCCAAGAAAGGGTAGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATGGACTCCCAAGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACGACCATGGCGATATTTCATCATATCCGGGATGTGATATGGTTCTGAAGATATCTGGGATGTGA

Coding sequence (CDS)

ATGGACTCCCAAGAAAGGGTAGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATGGACTCCCAAGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACGACCATGGCGATATTTCATCATATCCGGGATGTGATATGGTTCTGAAGATATCTGGGATGTGA

Protein sequence

MDSQERVELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPGCDMVLKISGM
Homology
[Close]
BLAST of CmaCh04G017230 vs. Swiss-Prot
Match: RK23_CITSI (50S ribosomal protein L23, chloroplastic OS=Citrus sinensis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.5e-13
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIM HTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHQLPRKGRRMGPIMAHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. Swiss-Prot
Match: RK23_PLAOC (50S ribosomal protein L23, chloroplastic OS=Platanus occidentalis GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.5e-13
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP KGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. Swiss-Prot
Match: RK23_VITVI (50S ribosomal protein L23, chloroplastic OS=Vitis vinifera GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.5e-13
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP KGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. Swiss-Prot
Match: RK23_COFAR (50S ribosomal protein L23, chloroplastic OS=Coffea arabica GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.5e-13
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP KGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. Swiss-Prot
Match: RK23_CUCSA (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.5e-13
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP KGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. TrEMBL
Match: A0A0U3SVK1_9ROSI (50S ribosomal protein L23, chloroplastic OS=Dipteronia sinensis GN=rpl23 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHQLPRKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. TrEMBL
Match: A0A0K0VIH5_9LILI (Ribosomal protein L23 OS=Stemona tuberosa GN=rpl23 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. TrEMBL
Match: A0A0K0VIW8_9LILI (Ribosomal protein L23 OS=Stichoneuron caudatum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. TrEMBL
Match: A0A0U2CJB3_PINTE (50S ribosomal protein L23, chloroplastic OS=Pinellia ternata GN=rpl23 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. TrEMBL
Match: H6T273_9POAL (Ribosomal protein L23 OS=Syngonanthus chrysanthus GN=rpl23 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. TAIR10
Match: ATCG00840.1 (ATCG00840.1 ribosomal protein L23.1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-12
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP K +RMGPI+GHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. TAIR10
Match: ATCG01300.1 (ATCG01300.1 ribosomal protein L23)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-12
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LP K +RMGPI+GHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. NCBI nr
Match: gi|937408465|ref|YP_009166647.1| (ribosomal protein L23 (chloroplast) [Epipremnum aureum])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 37 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYRRMIITLQPG 80

[Close]
BLAST of CmaCh04G017230 vs. NCBI nr
Match: gi|1002161074|ref|YP_009231201.1| (50S ribosomal protein L23 (chloroplast) [Dipteronia sinensis])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHQLPRKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. NCBI nr
Match: gi|910355699|ref|YP_009161596.1| (ribosomal protein L23 (chloroplast) [Pinellia ternata])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHRLPRKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. NCBI nr
Match: gi|340806763|gb|AEK71415.1| (ribosomal protein L23 [Schinus terebinthifolia])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPG 51
          VELFFGVKVIAMNSH LPRKGRRMGPIMGHTMHY    I+  PG
Sbjct: 39 VELFFGVKVIAMNSHQLPRKGRRMGPIMGHTMHYRRMIITLQPG 82

[Close]
BLAST of CmaCh04G017230 vs. NCBI nr
Match: gi|814072065|ref|YP_009129831.1| (ribosomal protein L23 (chloroplast) [Vanilla planifolia])

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 1 

Query: 7  VELFFGVKVIAMNSHGLPRKGRRMGPIMGHTMHYDHGDISSYPGCDMVLKI 58
          VELFFGVKVIAMNSH LP KGRRMGPIMGHTMHY    I+  PG  + L I
Sbjct: 39 VELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRMIITLQPGYSIPLLI 89

The following BLAST results are available for this feature:
BLAST of CmaCh04G017230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK23_CITSI6.5e-1379.5550S ribosomal protein L23, chloroplastic OS=Citrus sinensis GN=rpl23-A PE=3 SV=1[more]
RK23_PLAOC8.5e-1379.5550S ribosomal protein L23, chloroplastic OS=Platanus occidentalis GN=rpl23-A PE=... [more]
RK23_VITVI8.5e-1379.5550S ribosomal protein L23, chloroplastic OS=Vitis vinifera GN=rpl23-A PE=3 SV=1[more]
RK23_COFAR8.5e-1379.5550S ribosomal protein L23, chloroplastic OS=Coffea arabica GN=rpl23-A PE=3 SV=1[more]
RK23_CUCSA8.5e-1379.5550S ribosomal protein L23, chloroplastic OS=Cucumis sativus GN=rpl23-A PE=3 SV=1[more]
BLAST of CmaCh04G017230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0U3SVK1_9ROSI1.5e-1181.8250S ribosomal protein L23, chloroplastic OS=Dipteronia sinensis GN=rpl23 PE=3 SV... [more]
A0A0K0VIH5_9LILI1.5e-1181.82Ribosomal protein L23 OS=Stemona tuberosa GN=rpl23 PE=3 SV=1[more]
A0A0K0VIW8_9LILI1.5e-1181.82Ribosomal protein L23 OS=Stichoneuron caudatum GN=rpl23 PE=3 SV=1[more]
A0A0U2CJB3_PINTE1.5e-1181.8250S ribosomal protein L23, chloroplastic OS=Pinellia ternata GN=rpl23 PE=3 SV=1[more]
H6T273_9POAL1.5e-1181.82Ribosomal protein L23 OS=Syngonanthus chrysanthus GN=rpl23 PE=3 SV=1[more]
BLAST of CmaCh04G017230 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00840.12.6e-1272.73ATCG00840.1 ribosomal protein L23.1[more]
ATCG01300.12.6e-1272.73ATCG01300.1 ribosomal protein L23[more]
BLAST of CmaCh04G017230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937408465|ref|YP_009166647.1|2.1e-1181.82ribosomal protein L23 (chloroplast) [Epipremnum aureum][more]
gi|1002161074|ref|YP_009231201.1|2.1e-1181.8250S ribosomal protein L23 (chloroplast) [Dipteronia sinensis][more]
gi|910355699|ref|YP_009161596.1|2.1e-1181.82ribosomal protein L23 (chloroplast) [Pinellia ternata][more]
gi|340806763|gb|AEK71415.1|2.1e-1181.82ribosomal protein L23 [Schinus terebinthifolia][more]
gi|814072065|ref|YP_009129831.1|3.6e-1172.55ribosomal protein L23 (chloroplast) [Vanilla planifolia][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR012678Ribosomal_L23/L15e_core_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G017230.1CmaCh04G017230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 5..40
score: 4.
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 5..40
score: 8.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G017230Silver-seed gourdcarcmaB0339
CmaCh04G017230Silver-seed gourdcarcmaB0706
CmaCh04G017230Silver-seed gourdcarcmaB1013
CmaCh04G017230Cucumber (Chinese Long) v3cmacucB0886
CmaCh04G017230Watermelon (97103) v2cmawmbB759
CmaCh04G017230Wax gourdcmawgoB0891
CmaCh04G017230Cucurbita maxima (Rimu)cmacmaB189
CmaCh04G017230Cucurbita maxima (Rimu)cmacmaB404
CmaCh04G017230Cucurbita maxima (Rimu)cmacmaB540
CmaCh04G017230Cucumber (Gy14) v1cgycmaB0802
CmaCh04G017230Cucurbita moschata (Rifu)cmacmoB710
CmaCh04G017230Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G017230Cucurbita moschata (Rifu)cmacmoB747
CmaCh04G017230Wild cucumber (PI 183967)cmacpiB758
CmaCh04G017230Cucumber (Chinese Long) v2cmacuB749
CmaCh04G017230Melon (DHL92) v3.5.1cmameB641
CmaCh04G017230Watermelon (Charleston Gray)cmawcgB656
CmaCh04G017230Watermelon (97103) v1cmawmB700
CmaCh04G017230Cucurbita pepo (Zucchini)cmacpeB694
CmaCh04G017230Cucurbita pepo (Zucchini)cmacpeB704
CmaCh04G017230Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G017230Bottle gourd (USVL1VR-Ls)cmalsiB670
CmaCh04G017230Cucumber (Gy14) v2cgybcmaB675
CmaCh04G017230Melon (DHL92) v3.6.1cmamedB727