CmaCh04G016690 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G016690
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 8398424 .. 8399812 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCGTATGATTCTGAGGTTAGCTTTCTTTTTATCTCTAGTGCTTTACTTCTACCTCCGTAACCACTGTGTGTCAAATTATTATGGATTTTTGTATATTTCGCCTTCAATCTTCTATGTTTAGTCGTTAAGTTGGCCTGTGGACCTCTGATTTTGGTTATTTGATGCTGTTCAGGTCTTCCCATTGTCCTTCTCATCATCATGTATTTGCTTTTTAAGTGTACGATCTTTACCTGATTCAGCTATTTCCAGCACCTCATAACTTCATCATGTGTTCGTTAAATGTGCCTATCCGCCTTCCTACGGTTGGATTGATGTGACTGTAACTTATTATGTTAACTTCATCATGTGTTCGTTAAATGTACATTTTCCTTTTGGCCCGCGACAGATGTACTGAGTTTTGTATCATCTCCTTGGTGCAATGGTTACCATAAATCTAGCACATTATAAATTGTTTTCATTGAACTTTGCAGGGTACCTCCGAAAATCCGGATTGTGGGAGCTCTACTTTCTCATATTCAGAGAGTAGCCAAACAGAACCCACAGCCAAGTTATGCTCATCCTCTAATTGGAACTGCACGAGTTGTTGTTCTTTCATGCCCAAACCCATTCAACCTTTAGGCATTCCTATACAAATTTCCTCTGGAGAAGCTTTTGAATCTACTAATTTGGTGCACAGAGTTTGATTCTCCTACTCTCCAAAGAGACACCCAACAATGGTGCAGTGCATGTAGCAGCATTGATTTTGCTGATGTGTCCGAGCCACTCAAATCAGTCTTTTAGAGTATCATGCACAGCTCAAATCCACCTCTAGCATGAAGTTTTTCCTTTCGATATTTTCCTCAAGATTTTTAATACGCGTGTTCTAGGGAGAGGTTTCTATGTTTTTCTTCCATCGATGTGGGATCTCACAAATGAATTCAAATATGGGTTATGTGAAAGATATCTTTCACAAAAATCGCTATGGAATCGACTCAAAATCGTGAGCAGTACTGATATACATGTCATTGTTTTTCATGCTAAATGCTTGAGTCAGACTACTCAAAAGACACGTACGAGTGACCTATCTATCGTTCCCGCTTTGAGATGGAGGCATGTGAATTCCCTCCCAAGGCCTAGACCCTGGACCAGCAAGGACGGACCACCAAGGCCATGGGGTTGTGCTTGAAGGGGCCTTACATGCACCTCCACAAAATATAATCCTTTTTGTTACCCAAAATTGTGTGAAGACCTCGGAAATTCCAGCAAGGAATTCCCATCAAAGTTAACAAAAAGTGGCTCAAATTCTTCAAAATTGTTGAGTGCAAGACGACTTGACAAAGAATTTGTGGCTGTTCATGAACTTCAGCCGGACCCAGTATGAAACAATGATTGAACTATGCGTAA

mRNA sequence

ATGAAATCGTATGATTCTGAGGTCTTCCCATTGTCCTTCTCATCATCATGTATTTGCTTTTTAAGTGGTACCTCCGAAAATCCGGATTGTGGGAGCTCTACTTTCTCATATTCAGAGAGTAGCCAAACAGAACCCACAGCCAAGTTATGCTCATCCTCTAATTGGAACTGCACGAGTTGTTGTTCTTTCATGCCCAAACCCATTCAACCTTTAGGCATTCCTATACAAATTTCCTCTGGAGAAGCTTTTGAATCTACTAATTTGGTGCACAGAGTTTGATTCTCCTACTCTCCAAAGAGACACCCAACAATGGTGCAGTGCATGTAGCAGCATTGATTTTGCTGATGTGTCCGAGCCACTCAAATCAGTCTTTTAGAGTATCATGCACAGCTCAAATCCACCTCTAGCATGAAGTTTTTCCTTTCGATATTTTCCTCAAGATTTTTAATACGCGTGTTCTAGGGAGAGGTTTCTATGTTTTTCTTCCATCGATGTGGGATCTCACAAATGAATTCAAATATGGGTTATGTGAAAGATATCTTTCACAAAAATCGCTATGGAATCGACTCAAAATCGTGAGCAGTACTGATATACATGTCATTGTTTTTCATGCTAAATGCTTGAGTCAGACTACTCAAAAGACACGTACGAGTGACCTATCTATCGTTCCCGCTTTGAGATGGAGGCATGTGAATTCCCTCCCAAGGCCTAGACCCTGGACCAGCAAGGACGGACCACCAAGGCCATGGGGTTGTGCTTGAAGGGGCCTTACATGCACCTCCACAAAATATAATCCTTTTTGTTACCCAAAATTGTGTGAAGACCTCGGAAATTCCAGCAAGGAATTCCCATCAAAGTTAACAAAAAGTGGCTCAAATTCTTCAAAATTGTTGAGTGCAAGACGACTTGACAAAGAATTTGTGGCTGTTCATGAACTTCAGCCGGACCCAGTATGAAACAATGATTGAACTATGCGTAA

Coding sequence (CDS)

ATGAAATCGTATGATTCTGAGGTCTTCCCATTGTCCTTCTCATCATCATGTATTTGCTTTTTAAGTGGTACCTCCGAAAATCCGGATTGTGGGAGCTCTACTTTCTCATATTCAGAGAGTAGCCAAACAGAACCCACAGCCAAGTTATGCTCATCCTCTAATTGGAACTGCACGAGTTGTTGTTCTTTCATGCCCAAACCCATTCAACCTTTAGGCATTCCTATACAAATTTCCTCTGGAGAAGCTTTTGAATCTACTAATTTGGTGCACAGAGTTTGA

Protein sequence

MKSYDSEVFPLSFSSSCICFLSGTSENPDCGSSTFSYSESSQTEPTAKLCSSSNWNCTSCCSFMPKPIQPLGIPIQISSGEAFESTNLVHRV

Homology

[Close]

BLAST of CmaCh04G016690 vs. TrEMBL
Match: A0A0A0KSR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606260 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 51/66 (77.27%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 23  GTSENPDCGSSTFSYSESSQTEPTAKLCSSSNWNCTSCCSFMPKPIQPLGIPIQISSGEA 82
           G SENPD GSSTFS S+SS+TEPT KL SSSNWN TS  SFM KPI PL IP+Q SSGEA
Sbjct: 144 GNSENPDSGSSTFSQSDSSETEPTVKLRSSSNWNFTSRRSFMSKPIHPLAIPMQTSSGEA 203

Query: 83  FESTNL 89
           FESTNL
Sbjct: 204 FESTNL 209

[Close]

BLAST of CmaCh04G016690 vs. TrEMBL
Match: A0A067GTB8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015228mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-06
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 10  PLSFSSSCICFLSGTSENPDCGSSTFSYSESSQTEPTAKLCSSSNWNCTSCCSFMPKPIQ 69
           P+S   S    + GTS NP    ST S S+SS++EP  K C SS+ N +S  SFM KPI 
Sbjct: 77  PVSTQFSFTPAIEGTSANPYSRGSTSSRSDSSESEPKVKSCISSHCNFSSRLSFMSKPIY 136

Query: 70  PLGIPIQISSGEAFESTNLV 90
           PL  P Q S+ EA +S + V
Sbjct: 137 PLSFPTQTSNREAIDSASTV 156

[Close]

BLAST of CmaCh04G016690 vs. TrEMBL
Match: A0A067H5I0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015228mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-06
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 10  PLSFSSSCICFLSGTSENPDCGSSTFSYSESSQTEPTAKLCSSSNWNCTSCCSFMPKPIQ 69
           P+S   S    + GTS NP    ST S S+SS++EP  K C SS+ N +S  SFM KPI 
Sbjct: 109 PVSTQFSFTPAIEGTSANPYSRGSTSSRSDSSESEPKVKSCISSHCNFSSRLSFMSKPIY 168

Query: 70  PLGIPIQISSGEAFESTNLV 90
           PL  P Q S+ EA +S + V
Sbjct: 169 PLSFPTQTSNREAIDSASTV 188

[Close]

BLAST of CmaCh04G016690 vs. TrEMBL
Match: V4TF58_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031680mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.2e-06
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 10  PLSFSSSCICFLSGTSENPDCGSSTFSYSESSQTEPTAKLCSSSNWNCTSCCSFMPKPIQ 69
           P+S   S    + GTS NP    ST S S+SS++EP  K C SS+ N +S  SFM KPI 
Sbjct: 109 PVSTQFSFTPAIEGTSANPYSRGSTSSRSDSSESEPKVKSCISSHCNFSSRLSFMSKPIY 168

Query: 70  PLGIPIQISSGEAFESTNLV 90
           PL  P Q S+ EA +S + V
Sbjct: 169 PLSFPTQTSNREAIDSASTV 188

[Close]

BLAST of CmaCh04G016690 vs. TrEMBL
Match: A0A067GTJ9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015228mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-06
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 4   YDSEVFPLSFSSSCICFLSGTSENPDCGSSTFSYSESSQTEPTAKLCSSSNWNCTSCCSF 63
           Y++    +S   S    + GTS NP    ST S S+SS++EP  K C SS+ N +S  SF
Sbjct: 101 YETPTRRVSTQFSFTPAIEGTSANPYSRGSTSSRSDSSESEPKVKSCISSHCNFSSRLSF 160

Query: 64  MPKPIQPLGIPIQISSGEAFESTNLV 90
           M KPI PL  P Q S+ EA +S + V
Sbjct: 161 MSKPIYPLSFPTQTSNREAIDSASTV 186

[Close]

BLAST of CmaCh04G016690 vs. NCBI nr
Match: gi|659091111|ref|XP_008446375.1| (PREDICTED: uncharacterized protein LOC103489136 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-17
Identity = 51/66 (77.27%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 23  GTSENPDCGSSTFSYSESSQTEPTAKLCSSSNWNCTSCCSFMPKPIQPLGIPIQISSGEA 82
           G SENPD GSSTFS S+SS+TEPT KL SSSNWN TS  SFM KPI PL IP+Q SSGEA
Sbjct: 144 GNSENPDSGSSTFSQSDSSETEPTVKLRSSSNWNFTSRRSFMSKPIHPLAIPMQTSSGEA 203

Query: 83  FESTNL 89
           FESTNL
Sbjct: 204 FESTNL 209

[Close]

BLAST of CmaCh04G016690 vs. NCBI nr
Match: gi|449435334|ref|XP_004135450.1| (PREDICTED: uncharacterized protein LOC101203618 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-17
Identity = 51/66 (77.27%), Postives = 54/66 (81.82%), Query Frame = 1


Query: 23  GTSENPDCGSSTFSYSESSQTEPTAKLCSSSNWNCTSCCSFMPKPIQPLGIPIQISSGEA 82
           G SENPD GSSTFS S+SS+TEPT KL SSSNWN TS  SFM KPI PL IP+Q SSGEA
Sbjct: 144 GNSENPDSGSSTFSQSDSSETEPTVKLRSSSNWNFTSRRSFMSKPIHPLAIPMQTSSGEA 203

Query: 83  FESTNL 89
           FESTNL
Sbjct: 204 FESTNL 209

[Close]

BLAST of CmaCh04G016690 vs. NCBI nr
Match: gi|641864277|gb|KDO82963.1| (hypothetical protein CISIN_1g015228mg [Citrus sinensis])

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-06
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 10  PLSFSSSCICFLSGTSENPDCGSSTFSYSESSQTEPTAKLCSSSNWNCTSCCSFMPKPIQ 69
           P+S   S    + GTS NP    ST S S+SS++EP  K C SS+ N +S  SFM KPI 
Sbjct: 77  PVSTQFSFTPAIEGTSANPYSRGSTSSRSDSSESEPKVKSCISSHCNFSSRLSFMSKPIY 136

Query: 70  PLGIPIQISSGEAFESTNLV 90
           PL  P Q S+ EA +S + V
Sbjct: 137 PLSFPTQTSNREAIDSASTV 156

[Close]

BLAST of CmaCh04G016690 vs. NCBI nr
Match: gi|567892393|ref|XP_006438717.1| (hypothetical protein CICLE_v10031680mg [Citrus clementina])

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-06
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 10  PLSFSSSCICFLSGTSENPDCGSSTFSYSESSQTEPTAKLCSSSNWNCTSCCSFMPKPIQ 69
           P+S   S    + GTS NP    ST S S+SS++EP  K C SS+ N +S  SFM KPI 
Sbjct: 109 PVSTQFSFTPAIEGTSANPYSRGSTSSRSDSSESEPKVKSCISSHCNFSSRLSFMSKPIY 168

Query: 70  PLGIPIQISSGEAFESTNLV 90
           PL  P Q S+ EA +S + V
Sbjct: 169 PLSFPTQTSNREAIDSASTV 188

[Close]

BLAST of CmaCh04G016690 vs. NCBI nr
Match: gi|641864280|gb|KDO82966.1| (hypothetical protein CISIN_1g015228mg [Citrus sinensis])

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-06
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1


Query: 10  PLSFSSSCICFLSGTSENPDCGSSTFSYSESSQTEPTAKLCSSSNWNCTSCCSFMPKPIQ 69
           P+S   S    + GTS NP    ST S S+SS++EP  K C SS+ N +S  SFM KPI 
Sbjct: 109 PVSTQFSFTPAIEGTSANPYSRGSTSSRSDSSESEPKVKSCISSHCNFSSRLSFMSKPIY 168

Query: 70  PLGIPIQISSGEAFESTNLV 90
           PL  P Q S+ EA +S + V
Sbjct: 169 PLSFPTQTSNREAIDSASTV 188

The following BLAST results are available for this feature:

BLAST of CmaCh04G016690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G016690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSR5_CUCSA	1.2e-17	77.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606260 PE=4 SV=1	[more]
A0A067GTB8_CITSI	2.2e-06	46.25	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015228mg PE=4 SV=1	[more]
A0A067H5I0_CITSI	2.2e-06	46.25	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015228mg PE=4 SV=1	[more]
V4TF58_9ROSI	2.2e-06	46.25	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031680mg PE=4 SV=1	[more]
A0A067GTJ9_CITSI	4.8e-06	43.02	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015228mg PE=4 SV=1	[more]

BLAST of CmaCh04G016690 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G016690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091111\|ref\|XP_008446375.1\|	1.8e-17	77.27	PREDICTED: uncharacterized protein LOC103489136 [Cucumis melo]	[more]
gi\|449435334\|ref\|XP_004135450.1\|	1.8e-17	77.27	PREDICTED: uncharacterized protein LOC101203618 [Cucumis sativus]	[more]
gi\|641864277\|gb\|KDO82963.1\|	3.1e-06	46.25	hypothetical protein CISIN_1g015228mg [Citrus sinensis]	[more]
gi\|567892393\|ref\|XP_006438717.1\|	3.1e-06	46.25	hypothetical protein CICLE_v10031680mg [Citrus clementina]	[more]
gi\|641864280\|gb\|KDO82966.1\|	3.1e-06	46.25	hypothetical protein CISIN_1g015228mg [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G016690.1	CmaCh04G016690.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G016690	Cucsa.284940	Cucumber (Gy14) v1	cgycmaB0804
CmaCh04G016690	Cla010197	Watermelon (97103) v1	cmawmB702
CmaCh04G016690	Csa5G606260	Cucumber (Chinese Long) v2	cmacuB724
CmaCh04G016690	ClCG05G024140	Watermelon (Charleston Gray)	cmawcgB658
CmaCh04G016690	CSPI05G23880	Wild cucumber (PI 183967)	cmacpiB731
CmaCh04G016690	Lsi04G004050	Bottle gourd (USVL1VR-Ls)	cmalsiB678
CmaCh04G016690	CsaV3_5G032880	Cucumber (Chinese Long) v3	cmacucB0861
CmaCh04G016690	Cla97C05G106160	Watermelon (97103) v2	cmawmbB762
CmaCh04G016690	Bhi07G001264	Wax gourd	cmawgoB0902
CmaCh04G016690	CsGy5G023430	Cucumber (Gy14) v2	cgybcmaB648
CmaCh04G016690	Carg17280	Silver-seed gourd	carcmaB0133

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G016690	CmaCh18G011370	Cucurbita maxima (Rimu)	cmacmaB405

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G016690	Cucurbita moschata (Rifu)	cmacmoB709
CmaCh04G016690	Cucurbita moschata (Rifu)	cmacmoB715
CmaCh04G016690	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G016690	Wild cucumber (PI 183967)	cmacpiB692
CmaCh04G016690	Wild cucumber (PI 183967)	cmacpiB693
CmaCh04G016690	Wild cucumber (PI 183967)	cmacpiB748
CmaCh04G016690	Cucumber (Chinese Long) v2	cmacuB684
CmaCh04G016690	Cucumber (Chinese Long) v2	cmacuB685
CmaCh04G016690	Cucumber (Chinese Long) v2	cmacuB740
CmaCh04G016690	Melon (DHL92) v3.5.1	cmameB653
CmaCh04G016690	Melon (DHL92) v3.5.1	cmameB670
CmaCh04G016690	Melon (DHL92) v3.5.1	cmameB674
CmaCh04G016690	Watermelon (Charleston Gray)	cmawcgB653
CmaCh04G016690	Watermelon (Charleston Gray)	cmawcgB667
CmaCh04G016690	Watermelon (97103) v1	cmawmB721
CmaCh04G016690	Watermelon (97103) v1	cmawmB747
CmaCh04G016690	Cucurbita pepo (Zucchini)	cmacpeB695
CmaCh04G016690	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G016690	Cucurbita pepo (Zucchini)	cmacpeB750
CmaCh04G016690	Bottle gourd (USVL1VR-Ls)	cmalsiB654
CmaCh04G016690	Bottle gourd (USVL1VR-Ls)	cmalsiB645
CmaCh04G016690	Cucumber (Gy14) v2	cgybcmaB129
CmaCh04G016690	Cucumber (Gy14) v2	cgybcmaB130
CmaCh04G016690	Melon (DHL92) v3.6.1	cmamedB725
CmaCh04G016690	Melon (DHL92) v3.6.1	cmamedB740
CmaCh04G016690	Melon (DHL92) v3.6.1	cmamedB752
CmaCh04G016690	Melon (DHL92) v3.6.1	cmamedB756
CmaCh04G016690	Silver-seed gourd	carcmaB0068
CmaCh04G016690	Silver-seed gourd	carcmaB0339
CmaCh04G016690	Cucumber (Chinese Long) v3	cmacucB0814
CmaCh04G016690	Cucumber (Chinese Long) v3	cmacucB0815
CmaCh04G016690	Watermelon (97103) v2	cmawmbB755
CmaCh04G016690	Watermelon (97103) v2	cmawmbB798
CmaCh04G016690	Wax gourd	cmawgoB0844
CmaCh04G016690	Wax gourd	cmawgoB0887
CmaCh04G016690	Wax gourd	cmawgoB0916
CmaCh04G016690	Cucurbita maxima (Rimu)	cmacmaB113
CmaCh04G016690	Cucurbita maxima (Rimu)	cmacmaB237
CmaCh04G016690	Cucurbita maxima (Rimu)	cmacmaB330
CmaCh04G016690	Cucurbita maxima (Rimu)	cmacmaB423
CmaCh04G016690	Cucumber (Gy14) v1	cgycmaB0274
CmaCh04G016690	Cucumber (Gy14) v1	cgycmaB0442
CmaCh04G016690	Cucumber (Gy14) v1	cgycmaB0592