CmaCh04G015130 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G015130
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 7667123 .. 7667955 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGAATTTGTTATCATGGATACATTCTTTCTTACCCTAGCAACTTAGTTATTACCAATCATTCATTAATGATAACGCCAGTACTACTTTAAACTTCATTTGTACTTAAAAAGAGCATTTCTGTGACATTCTTCCATGTTAACTAAATTTGGTTTTGAGGCGCAAAACTCCTTTACAACCAATTTATTAACTATGACAATCTAGTAATTGATGTTATGCCATCTTTTTTCATCTCAGAATGCAAATGATTCAAGTGTAAGAAGGCCCTCCGCATATCCAGAGGCATTAAGGAAGGAAGTCATTGTAAGAAAAGAGGCTGCGGGAATGGCACTGTGCCATCTTCTCAAGTTCCATGCATTGTGTACAGTAGGATAAAAGCTCAAAATGTGTCTCATTTGGCTAAGGAATACAATCGCATATCCAATGAAGCTTACGATACTAGTTGCCTTGGAAAACATTATGGCGCGGAAACGTCTTCCACTGAATCCCCACATTCTTCTTATATCAATCAGATAACGTATGTCATTGCAGTCCTTCATTAGACCTAGATGTAGCATCACTGAGAGCCAACAAGAAGCATAATTCAGGACTTCTAGACACACCTGTTTTGAAGGAAGATTTGGAAGGTAGTTTTCTTTAAATATTTGCTAGCATCTAAAAGGTACTGTTATTTGTTTTAGGGATATCCCAAAACATGCTCAGGTTCTTTACTCCGAGTGTCTCAGTTTGTCAATCTTTCCACTTTGTTTGTTTAGTTGGAAGCGAACGGAAAACTTTACCAGCAACTGTAATGCAAGGGACTAGGTTAAAGAGCTGTTGTGTGCAATGA

mRNA sequence

ATGAATGCAAATGATTCAAGTGTAAGAAGGCCCTCCGCATATCCAGAGGCATTAAGGAAGGAAGTCATTGTAAGAAAAGAGGCTGCGGGAATGGCACTGTGCCATCTTCTCAAGTTCCATGCATTGTATAACGTATGTCATTGCAGTCCTTCATTAGACCTAGATGTAGCATCACTGAGAGCCAACAAGAAGCATAATTCAGGACTTCTAGACACACCTGTTTTGAAGGAAGATTTGGAAGTTGGAAGCGAACGGAAAACTTTACCAGCAACTGTAATGCAAGGGACTAGGTTAAAGAGCTGTTGTGTGCAATGA

Coding sequence (CDS)

ATGAATGCAAATGATTCAAGTGTAAGAAGGCCCTCCGCATATCCAGAGGCATTAAGGAAGGAAGTCATTGTAAGAAAAGAGGCTGCGGGAATGGCACTGTGCCATCTTCTCAAGTTCCATGCATTGTATAACGTATGTCATTGCAGTCCTTCATTAGACCTAGATGTAGCATCACTGAGAGCCAACAAGAAGCATAATTCAGGACTTCTAGACACACCTGTTTTGAAGGAAGATTTGGAAGTTGGAAGCGAACGGAAAACTTTACCAGCAACTGTAATGCAAGGGACTAGGTTAAAGAGCTGTTGTGTGCAATGA

Protein sequence

MNANDSSVRRPSAYPEALRKEVIVRKEAAGMALCHLLKFHALYNVCHCSPSLDLDVASLRANKKHNSGLLDTPVLKEDLEVGSERKTLPATVMQGTRLKSCCVQ
Homology
[Close]
BLAST of CmaCh04G015130 vs. NCBI nr
Match: gi|659091532|ref|XP_008446596.1| (PREDICTED: uncharacterized protein LOC103489281 isoform X1 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 6.0e-06
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 

Query: 42  LYNVCHCSPSLDLDVASLRANKKHNSGLLDTPVLKEDLE 81
           L  +CH SP+ DLD ASLR NK H+SGLL+ PVLKEDLE
Sbjct: 704 LEKICHHSPTFDLDEASLRVNKNHDSGLLEKPVLKEDLE 742

[Close]
BLAST of CmaCh04G015130 vs. NCBI nr
Match: gi|659091534|ref|XP_008446597.1| (PREDICTED: uncharacterized protein LOC103489281 isoform X2 [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 6.0e-06
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 

Query: 42  LYNVCHCSPSLDLDVASLRANKKHNSGLLDTPVLKEDLE 81
           L  +CH SP+ DLD ASLR NK H+SGLL+ PVLKEDLE
Sbjct: 666 LEKICHHSPTFDLDEASLRVNKNHDSGLLEKPVLKEDLE 704

The following BLAST results are available for this feature:
BLAST of CmaCh04G015130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G015130 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh04G015130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G015130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091532|ref|XP_008446596.1|6.0e-0669.23PREDICTED: uncharacterized protein LOC103489281 isoform X1 [Cucumis melo][more]
gi|659091534|ref|XP_008446597.1|6.0e-0669.23PREDICTED: uncharacterized protein LOC103489281 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G015130.1CmaCh04G015130.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G015130Carg01837Silver-seed gourdcarcmaB1170
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G015130Bottle gourd (USVL1VR-Ls)cmalsiB669
CmaCh04G015130Bottle gourd (USVL1VR-Ls)cmalsiB693
CmaCh04G015130Cucumber (Gy14) v2cgybcmaB131
CmaCh04G015130Cucumber (Gy14) v2cgybcmaB672
CmaCh04G015130Melon (DHL92) v3.6.1cmamedB726
CmaCh04G015130Melon (DHL92) v3.6.1cmamedB755
CmaCh04G015130Silver-seed gourdcarcmaB0836
CmaCh04G015130Silver-seed gourdcarcmaB1443
CmaCh04G015130Cucumber (Chinese Long) v3cmacucB0885
CmaCh04G015130Cucumber (Chinese Long) v3cmacucB0817
CmaCh04G015130Watermelon (97103) v2cmawmbB758
CmaCh04G015130Watermelon (97103) v2cmawmbB771
CmaCh04G015130Wax gourdcmawgoB0850
CmaCh04G015130Wax gourdcmawgoB0893
CmaCh04G015130Cucurbita maxima (Rimu)cmacmaB114
CmaCh04G015130Cucurbita maxima (Rimu)cmacmaB165
CmaCh04G015130Cucurbita maxima (Rimu)cmacmaB329
CmaCh04G015130Cucurbita maxima (Rimu)cmacmaB402
CmaCh04G015130Cucurbita maxima (Rimu)cmacmaB535
CmaCh04G015130Cucumber (Gy14) v1cgycmaB0781
CmaCh04G015130Cucumber (Gy14) v1cgycmaB0801
CmaCh04G015130Cucurbita moschata (Rifu)cmacmoB696
CmaCh04G015130Cucurbita moschata (Rifu)cmacmoB706
CmaCh04G015130Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G015130Cucurbita moschata (Rifu)cmacmoB737
CmaCh04G015130Wild cucumber (PI 183967)cmacpiB695
CmaCh04G015130Wild cucumber (PI 183967)cmacpiB755
CmaCh04G015130Cucumber (Chinese Long) v2cmacuB737
CmaCh04G015130Cucumber (Chinese Long) v2cmacuB686
CmaCh04G015130Cucumber (Chinese Long) v2cmacuB748
CmaCh04G015130Melon (DHL92) v3.5.1cmameB640
CmaCh04G015130Melon (DHL92) v3.5.1cmameB673
CmaCh04G015130Watermelon (Charleston Gray)cmawcgB655
CmaCh04G015130Watermelon (Charleston Gray)cmawcgB666
CmaCh04G015130Watermelon (97103) v1cmawmB699
CmaCh04G015130Watermelon (97103) v1cmawmB746
CmaCh04G015130Cucurbita pepo (Zucchini)cmacpeB700
CmaCh04G015130Cucurbita pepo (Zucchini)cmacpeB707
CmaCh04G015130Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G015130Cucurbita pepo (Zucchini)cmacpeB748