CmaCh04G013650 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G013650
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 6999769 .. 7005821 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCTAAGAATCCCAACAAGCCTGCTCCTATAATCACTCCAAAGCCAATGCCTGCCTTTTGTCCGCCACTCAGTCCTTTTGAATCTGCACCACCCTTTTCATTCAATGCTTCGTTCGTGGTCGGCGCCGGTGGCGGAGATGAATTTACATCAGGCGAAGGTGCGGGTGGCGGTGGTGGAGTCTCAGTGGTATTTGATGGTGGCGGTGGCGGAGGCGGACTGCCAGCTGTGTTGGATGGCGGTGGCGGAGGTGGACTGCCGGTTGTGTTGGATGGCGGCGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGCGGCGGTGCACCATCAGTTGTATTCAATGGCGGTGGTGGAGGAGGAGGAGATGCATCTTGAGAGAGAGTAAAATTTGTGAATTGAAAGAACACAAAAATGAGAATAAAAACAGAAATTCCAATCCTTCTTGCCATGAGGCTACCTATGATAAAGATGCACATAAACACAAATATTTATACACTTTTAATATAAATACACATTCTTGAAAGCTTTAAGAGCTTTAATTTATGTTCTGTCTTGTTTTATTTGTCTGCAATTTTAAGATTATTGTGTGCATAAAATTTATGTAAATTTTATTTATGGGGTCTTTTAAATGTATAAATTAGCCTTCAAAACTTTACTTTTATCGATCAAAGATTATTTTAGCTATAGAATCAAATGGCAGGCGTAGCCGGCTGCCTACAAAACCAAACAATTAAATAGTATGCGTAGTTAACGTTACTTAATATTAACATTACTTTATAGAATATTAATACTTGATTCAAATTTACATCAAAATTAGGTTGTTTATTTAAAGTATATTTTGAATTTTGTAATTCAAAACAATAATTTTTTAAAGCTAAGATTTATATGTTTTTAGTGTATCTTGATATTCAAGTTGAAATACATAATTATATTTTAAATTATGTTAAATTTATGTTTTTAAAATTTTAATTTATAATTTCATTCGCTTTTTATTACTTATGAATGGGTGTGGATGGAACGTTAGGAAGAGCGTTTGGGCCGGGCCTTGATTATTATGGAATTTGAGCTGAGCTTTTGTATATAAAAGGGATGTAATTGGGCTTCTTTGATCTTTGAGCCCATTAATTTCTATCATTAACGGGTCTACTGAGCGTCAACTTAAAACGCCGACGTTTTATACTCCTCCGTAAATAAAAGCGCAAGAGCTCTCGTGGATTCTCTTTATAAAGGCCAATAGTGGTATCTGGAATACTGACGAGAGCCATTTTTTCGCGCGAAAGTTGAAATTGCTCTGTTGAGAAGTGCGATGATTTTTCGTTCGAAGTTTTTGGTTGCTCGAGATGCTGTAAGTAAACGCCGTTCCACTTCCAGTGATTTTCCTTTCACAAAACGATATTGTTTCTTGTTAGGTCTTGTAAATACGAAGTTCTTTACGATTTTGTTTAGTCGAAGAGGAATCCAAATCGTTTATTGAACTAATAACGGTGATTTCTCACTCTCGTAATCCTTGATATGAAAAGTTTTGTTCGTCGATCGGATTAGATTAGGTCTTTTAATTGATCGATTTATCTCTTAGGATGTGTACGGTCTGATGTCTCAATACTTAATATCTTGGATTTTGCCATTTCGAACTAGCTGCGGCAGTGCTGGTTATCGTGAGTTCAAATTAGACTCCCTCTGAACATATTGTTTCTACAATCAATAGTCGTGATTGTAGTCTTATGAATCTTAATTGCGTTACGATTTTGATTAGTCGGAGAGGAAACCGAACCGTTTATTTAACTAGCGATCGTTATTACTCAGTGTCGTAACTCTGATGATAAAAATTTTTGTTGTTCGTCGATCAAATTAACTTAGGTGAGTTAGTTGATTGATCTGAATCATATATCGATTTGTCTCTTGTGCACGATTCCGATGATTAATAGAATCTCTCTCGATATAATTTATCTTATGTTTTGCATAAATCGCTGATATTCCTTGTTCTTCTAACTTTAAATTAAAAATGATTCCTCGACGAGCGTTCAGATATTTATTTTTTATCTCAGAATTTTGAAGACGATTTGGCGTCAGGAGTGATTTACGTGGATGCGTGTTTTGAATTGCTACCAGAAGGTCCGGAACATATTTATTGGTACGTATTTTGATGATTTTACACCGTGATACTCTTATAGTCTTTTATAAAGTTCAAATCGTGAAGCAAGTACTTCGAAAATCTAGCAAACTTCTCTGAATTTTTTTCTTGCTAATTTATTTCATTTTTGTGCAATTAGAACTGTGATACTTTTCGATTTGTTGAATATTATGTCCGGTAGAAGCTTGCACTGATTCATTAGATTTCGTACATTCGAGGCTTGAGTTGTGTTTCTTTTTAGAAAAGGAAAAGATAAGAGTTACTGCTGCCTATCAACATTGTGATCTGAGTCTTGGTTTTATTCATTTAGGAACTCTCGGGTTGTAATATTATCTCAAATATTTTGTATAAAACAACTTTCCTAAAATAAGTTTTTTAAGCATGCTATTTCTCTTATTAACTTTTTAGTCATTATTTTTGAATAGTTCACGTCTAACCGTCTTCCAGTAGTCTTAATTTATTGTACATAATTATATTATCTGAAATATCTTATACAAAACAATTTTCCTGCTTCTCGTTACTCCTAATTGCTTCTAGGCTTGAACTCCCAAAAAAAATTATTGTTGGTTTAAGTATTCTCTTCCTTCGAAGTTCGACGTCTTATTGTTTCTTAATAGTCTTAGTTTCCTTTAGGTTTATGTTGTTCTTTGATGTTTTTCGTCATATATAGAATGACTTTTTTTCGTTATTTATTATTAATGTACTCTGTTCAGTCTATACACTATGATACTTATGGAATAATTTAAGTTGCTTAAAATACCATCCTGAGTAAATCATATGCCAGTTAAGGATACAAAATCAGAAAATTCCAGTTATCAATCAGCCTTCTTTTGATTATGACTTTATTGCTCCCCGTGCTTATCCTAAAGCTGAGAAAGAAAAATAAAAAATTCTAAGAGCTTTAGTGAAGGGAACAATGAAAGATCTTGGGAAGTCTCAAAACTGCGACATCCTAAAACTTCTCAATTTTCTGGATTTATCATTGAGTGTTCTTTGGTTTCTTTTCCATCAAAATTAGCACCTAACCGTACAAACTACAGTACCCTTATGCTTGAGAGGGTTGCCAACCAAAGGTAGCTCCAAACATTTTCGGATTAAGAGAGTGTTTCAATAGTTGACACCAAATGATTTTGGGTTGGAATATTTAACTTTTCTTGTTATTTTAATCTCTATTTACTCTTAATGGAGTTAGATTAGAGAGATTTGTACGGGCAGACATTTAGTTCACTTCCATCCAGTGTCCAAAATACTCGTTATCAACAGATGTATTGAAAATGAAAAATGTTGTGTAAATTTTATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACAATTAGGTCGAGAGAAGAAAGTCCTCCAAGAATTAGTGTTGGAATCCCCACAATCTTTAATCAAAACAATTGAAGAGTTGAAAATTTTGATTGAACAAACTTTTAAGGGATTTGAACCAAAAACTCACTTTTTCCTTATCCTTAGTTCTAAAGAAGAGATCCTCGTTTATTTTCATACAGATGAGAGAACTTGTAGAATATCAAGTCTTGTGATCATTTTGATTGATATATATTTTTCTGAGGAAATTATGGTTGATATATTTTATTTATTGTCTAGAGGGGAAATATGTATCTCGGTATTGCGCTATATAATATTTTTTTTTTATTGAGAATATCCCACTCACATCTTCTCACATGTACAACACTAAAGAAATAGGTGGCATGTACAGTGTCATAGAAACCAAATAATATTCATATAACCCAAGACAATTTAGGTAATTCTCAACTTAAGTTTTGTGCATTCTCTAATAAACATTTTTGTCCATCGAAAATACCACCAAACTTATCCCATATATATTCTAAGTGATCCGAAGCACTTCCTAGTTCCTATTTCAGATGTTTGAGTTTGGTTACTATTTTAAAACACTTTTCAATAAAGTAAGAACACTATTTTCAAAAAAAGAAATTAGTTCATGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTAATTCTTCTCTTTCTAATATCTTTCTTGACAGTTTTTTCTCTCGTTAATTTCTCTTTTTGCACCATTTCTTTCTCCAGCTTCTCTCTCCCATTTTATCTCACTAATTTTCGTGACACTAACTTCCTTCTCTAATTTACTCTCTTCACACACACTTGTTTGTACTAGTCTCTCTACAGTAACGAGTCTCTTGTTAATATCTCTCTGCAAGTATTATCTCATTTGTTTCATTTTTGTGATTTAGTTTTAATAATTTTAACATATTTGATTGTGGTGATATGTGAATTCTAGAAACTAGAAGCATCTATAGTCTGTATTTTACCAAGTACTTGTAGATGACTAAAAGTATGTTGCGAAAACTTGGTTTGAGAATTTTAAAATAGATAGAAATCGCTTTAGATGGATCATTTAACTAATCTTTAAAACGTTAGTAGGATGAATACTTGTTTTATAACCTTCTATACTTATTTTACATGTTCGAAGTACTCCATCAACTTATGGTCATCAGGGGTGTAACTGATTTGATTCGATTTGGGTGTCTAATCTAAGCCATAAATGTTATGGTCAAGTATATATTTAGGAGGGATTTTGAAATTGCTAAACTGCTTTTGTGAGTTTAAAATTACTTAGAACATGCATCAAATGATTCAACCATTTTTAAATTTGCAGGATGAATTTGATAAAATTCCTAGTTACTTTGACCATGAAAGATTGATCAAAAGGGCTGTGTACACATTTCTTGTTCCTAGTAATATAGGTTTGAGAATCATGAGCGAAACTTCAAACGTTGTTAATAAAACATTGAGACTAAAAGCTTCTGCATGTTGCATTGTGTGCATACTTTTCGATAGTTTACATCTTGCACTATCTTTTAGGAATGAGTTCGAACCAATATGCATCTGGACTTCGCGTTGATGTTGAATTTGATGCATAAGCTTTGAAGCGAAGTAATTGCAACTGCAACATGTCGCAGAGGTTTGTTCCTCTACCAACGCTTTTCTTTCTTTTTCTCTTTCTTGCACATCTACAAAGTCAGAAAATTCTCAAAATTATTCATATTAATAGAACAAGAATTCTAACAAAAAGATCAATAATCTTAGCAATAAGTTAGTGCTAGCATTTCAGAAAGTTCGTAATGAGATAATTTCAAATTTCTTGCTGAAAACAATTAAGGTAAATATGATGTGTTCCCCTTATGTTTATACAACCATTTGGCAGAAAAGTTTTCTTAATAAAAGGGTTACACGGTTGTTTAACTTTCAAGTGGGAGGGTGCTATATAGAATTTCTATTCTTTTTTAAAAAGAAATTAAATAAAATAGAAAATTTTAATTTACAAATGTATTTCTTTCATAACGAAGCACTTGAAGTTTAGATAATATTTTTAGAATTGGAGATAAACTTAAAAGAGAATGATGCAACAAAAAAGAAAGATGAGTTAAGAAGATTTCCTAGGCTTAGAAAAGAAAAGTCTAATATGAGAAAGAAAGCAATTGAAGGAAAACTAGATTTTCCAAGATGGAAAAGAATGAAAATGAATGAGAGAAAGAGTTTTAGTTTTAAAATTTACTTACATTTCCAAAATTTAAATTTAGAAGTTTAATAGATTGTTGAGGCTTTGTATGATAACCGAAATTTTTTGGTTATTGGTTTTTCTACCCTCTATTCTTCTCTCCCTGCTTTTTAATCGATAAAAAACAGAAAATGCCACTGAACATTCTTTTTTCATTATCTATAAGAAGACTTCTTATTGCGTTTTTTATCTTAAATAAAAATGTTAGGGAAAGGAACAAGTGAAAAGGTTGGGGGAGAAATCTTAG

mRNA sequence

ATGAATCCTAAGAATCCCAACAAGCCTGCTCCTATAATCACTCCAAAGCCAATGCCTGCCTTTTGTCCGCCACTCAGTCCTTTTGAATCTGCACCACCCTTTTCATTCAATGCTTCGTTCGTGGTCGGCGCCGGTGGCGGAGATGAATTTACATCAGGCGAAGGTGCGGGTGGCGGTGGTGGAGTCTCAGTGGTATTTGATGGTGGCGGTGGCGGAGGCGGACTGCCAGCTGTGTTGGATGGCGGTGGCGGAGGTGGACTGCCGGTTGTGTTGGATGGCGGCGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGCGGCGGTGCACCATCAGTTAATTTTGAAGACGATTTGGCGTCAGGAGTGATTTACGTGGATGCGTGTTTTGAATTGCTACCAGAAGGTCCGGAACATATTTATTGGTACGGAAAGGAACAAGTGAAAAGGTTGGGGGAGAAATCTTAG

Coding sequence (CDS)

ATGAATCCTAAGAATCCCAACAAGCCTGCTCCTATAATCACTCCAAAGCCAATGCCTGCCTTTTGTCCGCCACTCAGTCCTTTTGAATCTGCACCACCCTTTTCATTCAATGCTTCGTTCGTGGTCGGCGCCGGTGGCGGAGATGAATTTACATCAGGCGAAGGTGCGGGTGGCGGTGGTGGAGTCTCAGTGGTATTTGATGGTGGCGGTGGCGGAGGCGGACTGCCAGCTGTGTTGGATGGCGGTGGCGGAGGTGGACTGCCGGTTGTGTTGGATGGCGGCGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGCTGGCGGAGGTGGACTGCCAGTTGTGTTGGATGGCGGCGGCGGCGGCGGTGCACCATCAGTTAATTTTGAAGACGATTTGGCGTCAGGAGTGATTTACGTGGATGCGTGTTTTGAATTGCTACCAGAAGGTCCGGAACATATTTATTGGTACGGAAAGGAACAAGTGAAAAGGTTGGGGGAGAAATCTTAG

Protein sequence

MNPKNPNKPAPIITPKPMPAFCPPLSPFESAPPFSFNASFVVGAGGGDEFTSGEGAGGGGGVSVVFDGGGGGGGLPAVLDGGGGGGLPVVLDGGGGGGLPVVLDGAGGGGLPVVLDGGGGGGAPSVNFEDDLASGVIYVDACFELLPEGPEHIYWYGKEQVKRLGEKS
Homology
[Close]
BLAST of CmaCh04G013650 vs. TrEMBL
Match: A8E425_PSEVI (HrpW OS=Pseudomonas viridiflava GN=hrpW PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-09
Identity = 56/105 (53.33%), Postives = 62/105 (59.05%), Query Frame = 1 

Query: 25  LSPFESAPPFSFNASFVV---GAGGGDEFTSGEGAGGGGGVSVVFDGGGGGGGLPAVLDG 84
           ++ F  + P +FN        G GGG   T   G GGGGG +    GGGGGGG P+V  G
Sbjct: 226 IAQFMDSHPETFNQPSDAAGKGGGGGGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGG 285

Query: 85  GGGGGLPVVLDGGGGGGLPVVLDGAGGGGLPVVLDGGGGGGAPSV 127
           GGGGG P V  GGGGGG P V  G GGGG P V  GGGGGG PSV
Sbjct: 286 GGGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSV 330

[Close]
BLAST of CmaCh04G013650 vs. NCBI nr
Match: gi|659092081|ref|XP_008446890.1| (PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 6.3e-13
Identity = 58/87 (66.67%), Postives = 63/87 (72.41%), Query Frame = 1 

Query: 43  GAGGGDEFTSGEGAGG--------GGGVSVVFDGGGGGGGLPAVLDGGGGGGLPVVLDGG 102
           G GGGDE    +G GG        GGGVSVVFDGGGGGG +  V DGGGGGG+ VV DGG
Sbjct: 17  GGGGGDELVVLDGGGGVSVVLDGGGGGVSVVFDGGGGGG-VSVVFDGGGGGGVSVVFDGG 76

Query: 103 GGGGLPVVLDGAGGGGLPVVLDGGGGG 122
           GGGG+ VVLDG GGGG+ VV DGGGGG
Sbjct: 77  GGGGVLVVLDGGGGGGVSVVFDGGGGG 102

[Close]
BLAST of CmaCh04G013650 vs. NCBI nr
Match: gi|659092083|ref|XP_008446891.1| (PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X2 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11
Identity = 53/79 (67.09%), Postives = 58/79 (73.42%), Query Frame = 1 

Query: 43  GAGGGDEFTSGEGAGGGGGVSVVFDGGGGGGGLPAVLDGGGGGGLPVVLDGGGGGGLPVV 102
           G GGGDE    +G   GGGVSVV DGGGGG  +  V DGGGGGG+ VV DGGGGGG+ VV
Sbjct: 17  GGGGGDELVVLDG---GGGVSVVLDGGGGG--VSVVFDGGGGGGVSVVFDGGGGGGVSVV 76

Query: 103 LDGAGGGGLPVVLDGGGGG 122
            DG GGGG+ VV DGGGGG
Sbjct: 77  FDGGGGGGVSVVFDGGGGG 90

[Close]
BLAST of CmaCh04G013650 vs. NCBI nr
Match: gi|62001501|gb|AAX58457.1| (HrpW [Pseudomonas viridiflava])

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-09
Identity = 56/105 (53.33%), Postives = 62/105 (59.05%), Query Frame = 1 

Query: 25  LSPFESAPPFSFNASFVV---GAGGGDEFTSGEGAGGGGGVSVVFDGGGGGGGLPAVLDG 84
           ++ F  + P +FN        G GGG   T   G GGGGG +    GGGGGGG P+V  G
Sbjct: 226 IAQFMDSHPETFNQPSDAAGKGGGGGGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGG 285

Query: 85  GGGGGLPVVLDGGGGGGLPVVLDGAGGGGLPVVLDGGGGGGAPSV 127
           GGGGG P V  GGGGGG P V  G GGGG P V  GGGGGG PSV
Sbjct: 286 GGGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSVGGGGGGGGTPSV 330

The following BLAST results are available for this feature:
BLAST of CmaCh04G013650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G013650 vs. TrEMBL
Match NameE-valueIdentityDescription
A8E425_PSEVI2.9e-0953.33HrpW OS=Pseudomonas viridiflava GN=hrpW PE=4 SV=1[more]
BLAST of CmaCh04G013650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G013650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659092081|ref|XP_008446890.1|6.3e-1366.67PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X1 ... [more]
gi|659092083|ref|XP_008446891.1|2.0e-1167.09PREDICTED: serine, glycine, tyrosine and glutamine-rich protein-like isoform X2 ... [more]
gi|62001501|gb|AAX58457.1|4.2e-0953.33HrpW [Pseudomonas viridiflava][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G013650.1CmaCh04G013650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G013650Cp4.1LG01g14860Cucurbita pepo (Zucchini)cmacpeB720
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G013650Silver-seed gourdcarcmaB0370
CmaCh04G013650Silver-seed gourdcarcmaB0673
CmaCh04G013650Silver-seed gourdcarcmaB0966
CmaCh04G013650Silver-seed gourdcarcmaB1170
CmaCh04G013650Cucumber (Chinese Long) v3cmacucB0885
CmaCh04G013650Watermelon (97103) v2cmawmbB758
CmaCh04G013650Watermelon (97103) v2cmawmbB787
CmaCh04G013650Wax gourdcmawgoB0873
CmaCh04G013650Wax gourdcmawgoB0903
CmaCh04G013650Cucurbita maxima (Rimu)cmacmaB321
CmaCh04G013650Cucurbita maxima (Rimu)cmacmaB402
CmaCh04G013650Cucurbita maxima (Rimu)cmacmaB536
CmaCh04G013650Cucumber (Gy14) v1cgycmaB0850
CmaCh04G013650Cucurbita moschata (Rifu)cmacmoB691
CmaCh04G013650Cucurbita moschata (Rifu)cmacmoB706
CmaCh04G013650Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G013650Cucurbita moschata (Rifu)cmacmoB740
CmaCh04G013650Wild cucumber (PI 183967)cmacpiB755
CmaCh04G013650Cucumber (Chinese Long) v2cmacuB748
CmaCh04G013650Melon (DHL92) v3.5.1cmameB640
CmaCh04G013650Watermelon (Charleston Gray)cmawcgB655
CmaCh04G013650Watermelon (Charleston Gray)cmawcgB679
CmaCh04G013650Watermelon (97103) v1cmawmB667
CmaCh04G013650Watermelon (97103) v1cmawmB699
CmaCh04G013650Cucurbita pepo (Zucchini)cmacpeB700
CmaCh04G013650Cucurbita pepo (Zucchini)cmacpeB712
CmaCh04G013650Cucurbita pepo (Zucchini)cmacpeB734
CmaCh04G013650Bottle gourd (USVL1VR-Ls)cmalsiB669
CmaCh04G013650Bottle gourd (USVL1VR-Ls)cmalsiB706
CmaCh04G013650Cucumber (Gy14) v2cgybcmaB672
CmaCh04G013650Melon (DHL92) v3.6.1cmamedB726