CmaCh04G013440 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G013440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 6863819 .. 6864331 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACTGTTTCCATGCTCCTCTGCTTCCTTTTGCTTGCCAACCTCTGCTATGCAGCAGAGCAAGAAATGGGTAAGTTGGAGGCCGCCCAAGGTACCTTCACCAACCTTTTAGGCTCATTTTGGGTCATTTTCAGGCTAAAAATGCTTGTTGTTTTGATCATGTCTGTCTTCATTTTATGCAGGCACCAAAGGAGAAGGGGAAGAGACCGAAGCAGAGAAATTGAAGCTTATTCCACACCACATACCATTCTACAAGAAGCCGCTTTTGAAGGCAGCTCCAAAGAAGCCAATTCCGCATCACCCAATCCTCAAGAAGCCATTTCCAAAGCCACGTTATCCGCCAGTGTTCCCCACTCATCCTTGAAACAAACTATGCTCATGAGCTCTTATAATGCCATGGAATAATAAGCTTTACCGCATAGTTAAGTTTTAGAAACCAAGAGTTTATTTTGGAGTCAGCTTCCTTTGCTACTACTACTCTTCACTCTTCTTGTTCTTGTTGTGTTCAAT

mRNA sequence

ATGAAGACTGTTTCCATGCTCCTCTGCTTCCTTTTGCTTGCCAACCTCTGCTATGCAGCAGAGCAAGAAATGGGTAAGTTGGAGGCCGCCCAAGGCACCAAAGGAGAAGGGGAAGAGACCGAAGCAGAGAAATTGAAGCTTATTCCACACCACATACCATTCTACAAGAAGCCGCTTTTGAAGGCAGCTCCAAAGAAGCCAATTCCGCATCACCCAATCCTCAAGAAGCCATTTCCAAAGCCACGTTATCCGCCAGTGTTCCCCACTCATCCTTGAAACAAACTATGCTCATGAGCTCTTATAATGCCATGGAATAATAAGCTTTACCGCATAGTTAAGTTTTAGAAACCAAGAGTTTATTTTGGAGTCAGCTTCCTTTGCTACTACTACTCTTCACTCTTCTTGTTCTTGTTGTGTTCAAT

Coding sequence (CDS)

ATGAAGACTGTTTCCATGCTCCTCTGCTTCCTTTTGCTTGCCAACCTCTGCTATGCAGCAGAGCAAGAAATGGGTAAGTTGGAGGCCGCCCAAGGCACCAAAGGAGAAGGGGAAGAGACCGAAGCAGAGAAATTGAAGCTTATTCCACACCACATACCATTCTACAAGAAGCCGCTTTTGAAGGCAGCTCCAAAGAAGCCAATTCCGCATCACCCAATCCTCAAGAAGCCATTTCCAAAGCCACGTTATCCGCCAGTGTTCCCCACTCATCCTTGA

Protein sequence

MKTVSMLLCFLLLANLCYAAEQEMGKLEAAQGTKGEGEETEAEKLKLIPHHIPFYKKPLLKAAPKKPIPHHPILKKPFPKPRYPPVFPTHP

Homology

[Close]

BLAST of CmaCh04G013440 vs. TrEMBL
Match: A0A0A0KRM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.9e-12
Identity = 45/90 (50.00%), Postives = 54/90 (60.00%), Query Frame = 1


Query: 4  VSMLLCFLLLANLCYAAEQEMGKLEAAQGT--KGEGEETEAEKLKLIPHHIPFYKKPLLK 63
          +++ L   LL N CYAAE+       AQG      GEE + EK K +P HIPFYKKP+ K
Sbjct: 1  MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK 60

Query: 64 AAPKKPIPHHPILKKPFPKPRYPPVFPTHP 92
                IP  PI+KKPFPKP  PPV P+HP
Sbjct: 61 T-----IPRQPIIKKPFPKPYRPPVLPSHP 85

[Close]

BLAST of CmaCh04G013440 vs. TrEMBL
Match: E5GCK5_CUCME (Annexin OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-11
Identity = 51/121 (42.15%), Postives = 62/121 (51.24%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGTKG----EGEETEAEKLKLIPHHIPFYKKPL 63
           + +LL FLLL N CYAAE+ + + +  +G  G     GEE + EK K + HH P+YKKP 
Sbjct: 386 LGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHKPYYKKPF 445

Query: 64  LKAAP----------------KKPIPHHPILKKP-------------FPKPRYPPVFPTH 92
           LK  P                KKPIP HP LKKP             F KP +PPVF TH
Sbjct: 446 LKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPIHPPVFHTH 505

[Close]

BLAST of CmaCh04G013440 vs. TrEMBL
Match: A0A0A0KWW0_CUCSA (ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-09
Identity = 49/111 (44.14%), Postives = 61/111 (54.95%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGTKG---EGEETEAEKLKLIPHHIPFYKKPLL 63
           + +LL FLLL N CYAAE+ + + ++ +G  G   +  E E EK K + HH P+YKKP L
Sbjct: 8   LGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKPYYKKPFL 67

Query: 64  KAAP------KKPIPHHPILKKP-------------FPKP-RYPPVFPTHP 92
           K  P      KKPIP HP  KKP             F KP  +PPVF THP
Sbjct: 68  KPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP 118

[Close]

BLAST of CmaCh04G013440 vs. NCBI nr
Match: gi|700197123|gb|KGN52300.1| (hypothetical protein Csa_5G623640 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 45/90 (50.00%), Postives = 54/90 (60.00%), Query Frame = 1


Query: 4  VSMLLCFLLLANLCYAAEQEMGKLEAAQGT--KGEGEETEAEKLKLIPHHIPFYKKPLLK 63
          +++ L   LL N CYAAE+       AQG      GEE + EK K +P HIPFYKKP+ K
Sbjct: 1  MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK 60

Query: 64 AAPKKPIPHHPILKKPFPKPRYPPVFPTHP 92
                IP  PI+KKPFPKP  PPV P+HP
Sbjct: 61 T-----IPRQPIIKKPFPKPYRPPVLPSHP 85

[Close]

BLAST of CmaCh04G013440 vs. NCBI nr
Match: gi|778706732|ref|XP_011655904.1| (PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 45/90 (50.00%), Postives = 54/90 (60.00%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGT--KGEGEETEAEKLKLIPHHIPFYKKPLLK 63
           +++ L   LL N CYAAE+       AQG      GEE + EK K +P HIPFYKKP+ K
Sbjct: 69  MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIFK 128

Query: 64  AAPKKPIPHHPILKKPFPKPRYPPVFPTHP 92
                 IP  PI+KKPFPKP  PPV P+HP
Sbjct: 129 T-----IPRQPIIKKPFPKPYRPPVLPSHP 153

[Close]

BLAST of CmaCh04G013440 vs. NCBI nr
Match: gi|307136392|gb|ADN34202.1| (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 51/121 (42.15%), Postives = 62/121 (51.24%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGTKG----EGEETEAEKLKLIPHHIPFYKKPL 63
           + +LL FLLL N CYAAE+ + + +  +G  G     GEE + EK K + HH P+YKKP 
Sbjct: 386 LGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHKPYYKKPF 445

Query: 64  LKAAP----------------KKPIPHHPILKKP-------------FPKPRYPPVFPTH 92
           LK  P                KKPIP HP LKKP             F KP +PPVF TH
Sbjct: 446 LKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPIHPPVFHTH 505

[Close]

BLAST of CmaCh04G013440 vs. NCBI nr
Match: gi|659092159|ref|XP_008446928.1| (PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-11
Identity = 51/121 (42.15%), Postives = 62/121 (51.24%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGTKG----EGEETEAEKLKLIPHHIPFYKKPL 63
           + +LL FLLL N CYAAE+ + + +  +G  G     GEE + EK K + HH P+YKKP 
Sbjct: 8   LGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHKPYYKKPF 67

Query: 64  LKAAP----------------KKPIPHHPILKKP-------------FPKPRYPPVFPTH 92
           LK  P                KKPIP HP LKKP             F KP +PPVF TH
Sbjct: 68  LKPIPYKHPFLKKPIPVHPFHKKPIPVHPFLKKPISFKKKPIPVHPFFKKPIHPPVFHTH 127

[Close]

BLAST of CmaCh04G013440 vs. NCBI nr
Match: gi|778706736|ref|XP_011655905.1| (PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-09
Identity = 49/111 (44.14%), Postives = 61/111 (54.95%), Query Frame = 1


Query: 4   VSMLLCFLLLANLCYAAEQEMGKLEAAQGTKG---EGEETEAEKLKLIPHHIPFYKKPLL 63
           + +LL FLLL N CYAAE+ + + ++ +G  G   +  E E EK K + HH P+YKKP L
Sbjct: 396 LGILLSFLLLVNFCYAAEESVTEFQSGKGAAGVTAKNGEEEDEKFKFLLHHKPYYKKPFL 455

Query: 64  KAAP------KKPIPHHPILKKP-------------FPKP-RYPPVFPTHP 92
           K  P      KKPIP HP  KKP             F KP  +PPVF THP
Sbjct: 456 KPIPYKHPFLKKPIPVHPFHKKPIVFEKKPLPVHPFFKKPIDHPPVFHTHP 506

The following BLAST results are available for this feature:

BLAST of CmaCh04G013440 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G013440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRM7_CUCSA	9.9e-12	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623640 PE=4 SV=1	[more]
E5GCK5_CUCME	2.2e-11	42.15	Annexin OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0KWW0_CUCSA	2.7e-09	44.14	ATP-dependent RNA helicase DBP7 OS=Cucumis sativus GN=Csa_5G623650 PE=4 SV=1	[more]

BLAST of CmaCh04G013440 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G013440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197123\|gb\|KGN52300.1\|	1.4e-11	50.00	hypothetical protein Csa_5G623640 [Cucumis sativus]	[more]
gi\|778706732\|ref\|XP_011655904.1\|	1.4e-11	50.00	PREDICTED: uncharacterized protein LOC101209862 [Cucumis sativus]	[more]
gi\|307136392\|gb\|ADN34202.1\|	3.2e-11	42.15	annexin [Cucumis melo subsp. melo]	[more]
gi\|659092159\|ref\|XP_008446928.1\|	3.2e-11	42.15	PREDICTED: uncharacterized protein LOC103489493 [Cucumis melo]	[more]
gi\|778706736\|ref\|XP_011655905.1\|	3.9e-09	44.14	PREDICTED: LOW QUALITY PROTEIN: annexin D3 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G013440.1	CmaCh04G013440.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G013440	Carg01979	Silver-seed gourd	carcmaB1170

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G013440	Melon (DHL92) v3.6.1	cmamedB726
CmaCh04G013440	Silver-seed gourd	carcmaB0673
CmaCh04G013440	Cucumber (Chinese Long) v3	cmacucB0885
CmaCh04G013440	Watermelon (97103) v2	cmawmbB758
CmaCh04G013440	Wax gourd	cmawgoB0903
CmaCh04G013440	Cucurbita maxima (Rimu)	cmacmaB402
CmaCh04G013440	Cucumber (Gy14) v1	cgycmaB0850
CmaCh04G013440	Cucurbita moschata (Rifu)	cmacmoB706
CmaCh04G013440	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G013440	Wild cucumber (PI 183967)	cmacpiB755
CmaCh04G013440	Cucumber (Chinese Long) v2	cmacuB748
CmaCh04G013440	Melon (DHL92) v3.5.1	cmameB640
CmaCh04G013440	Cucurbita pepo (Zucchini)	cmacpeB700
CmaCh04G013440	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G013440	Bottle gourd (USVL1VR-Ls)	cmalsiB669
CmaCh04G013440	Cucumber (Gy14) v2	cgybcmaB672