CmaCh04G013110 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G013110
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionF-box family protein
LocationCma_Chr04 : 6665235 .. 6666300 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGCTGCAACAACAACGGAAACCCAGAGATTCTATACCGAAAGGGAATGCTGGAATTCTTCACCCATTATAGAGAAGCTTCTGGAATGACATATTTAAAGCTTTATGCCCAAAAAGGCTACTCGGAAACTTGTTATGTATACGACATCATTTTGTATGCAACGAGTTTGGAGGATGAGGGAGTGAAGTTCTTGAAGATTTGTGAGGCAAAATTAGGGCTTAAACGGGCTGAATGTCGTCGGAGAGTTAAGGAATTTGTTTGTAATCTTTGGGTTAAGAACAATATTCCTTTGTCGGAAAAGGATTTCGGTGACCGGAGGGAATGTGAGAGTGTAGTTAAGAATACTTGTAAGAAGAACGTGAGAAGAATTAGATGGGATGGGAACGATGGGGATGATTATTATGGAGAACACACGTGCGAAGCGTGTAAATGGAATGAGGAAGTTTTGAGATTTTGTAATATGCTTAGAACTGGGAGTTACGATATCATGTTAGGGCACTTGTAGTTACGGAAGACATACCTATATATATATATATATTTATATGAATATTTTAGCGCATTTGAAAGAATCACTAATAACTTAGATTCGTACAGCTTTAAACCGAATAAATTTAGAAGAACTAAACAAATAAAAATATGAAAGTTTGGCGCTAAATTTGTAATTTAAGCTGATTTTGATAATTTGTGAAAGGACGAAAATAGCCTCCACAATTCGAATAATTCTCTGTTCGCAAAAGAACCCTAAACCCATCGCCATAGCCCCACGCACCGAACCACAACAAGAAACCAGGCGAAAGCATCAGAAGTTGACGCCTCTCCAGACGTAATCTCTCTCTCTCTCACTCGGGAATTCGGAGTGATCTTTTTCGTTATGTTGTTTTCCATTTCTCAGTGCGCTGTGATGTGATGTGTGTGCTCTTTAGCGATTCATTGTTTTTCTACTCCAACTCCAATTTGTTCTTCTTTTGGATTTTGAGTTTCTTTGTGTTATCCGTTCTTCTTTCTCTCAGAAGGCGACCACCACTCGAAGAAGCCAAAATTCTCTTTCCGCTACTTTCTGA

mRNA sequence

ATGGAAAGCTGCAACAACAACGGAAACCCAGAGATTCTATACCGAAAGGGAATGCTGGAATTCTTCACCCATTATAGAGAAGCTTCTGGAATGACATATTTAAAGCTTTATGCCCAAAAAGGCTACTCGGAAACTTGTTATGTATACGACATCATTTTGTATGCAACGAGTTTGGAGGATGAGGGAGTGAAGTTCTTGAAGATTTGTGAGGCAAAATTAGGGCTTAAACGGGCTGAATGTCGTCGGAGAGTTAAGGAATTTGTTTGTAATCTTTGGGTTAAGAACAATATTCCTTTGTCGGAAAAGGATTTCGGTGACCGGAGGGAATGTGAGAGTGTAGTTAAGAATACTTGTAAGAAGAACGTGAGAAGAATTAGATGGGATGGGAACGATGGGGATGATTATTATGGAGAACACACGTGCGAAGCGTGTAAATGGAATGAGGAAGTTTTGAGATTTTGTAATATGCTTAGAACTGGGAGTTACGATATCATCCCCACGCACCGAACCACAACAAGAAACCAGGCGAAAGCATCAGAAGTTGACGCCTCTCCAGACAAGGCGACCACCACTCGAAGAAGCCAAAATTCTCTTTCCGCTACTTTCTGA

Coding sequence (CDS)

ATGGAAAGCTGCAACAACAACGGAAACCCAGAGATTCTATACCGAAAGGGAATGCTGGAATTCTTCACCCATTATAGAGAAGCTTCTGGAATGACATATTTAAAGCTTTATGCCCAAAAAGGCTACTCGGAAACTTGTTATGTATACGACATCATTTTGTATGCAACGAGTTTGGAGGATGAGGGAGTGAAGTTCTTGAAGATTTGTGAGGCAAAATTAGGGCTTAAACGGGCTGAATGTCGTCGGAGAGTTAAGGAATTTGTTTGTAATCTTTGGGTTAAGAACAATATTCCTTTGTCGGAAAAGGATTTCGGTGACCGGAGGGAATGTGAGAGTGTAGTTAAGAATACTTGTAAGAAGAACGTGAGAAGAATTAGATGGGATGGGAACGATGGGGATGATTATTATGGAGAACACACGTGCGAAGCGTGTAAATGGAATGAGGAAGTTTTGAGATTTTGTAATATGCTTAGAACTGGGAGTTACGATATCATCCCCACGCACCGAACCACAACAAGAAACCAGGCGAAAGCATCAGAAGTTGACGCCTCTCCAGACAAGGCGACCACCACTCGAAGAAGCCAAAATTCTCTTTCCGCTACTTTCTGA

Protein sequence

MESCNNNGNPEILYRKGMLEFFTHYREASGMTYLKLYAQKGYSETCYVYDIILYATSLEDEGVKFLKICEAKLGLKRAECRRRVKEFVCNLWVKNNIPLSEKDFGDRRECESVVKNTCKKNVRRIRWDGNDGDDYYGEHTCEACKWNEEVLRFCNMLRTGSYDIIPTHRTTTRNQAKASEVDASPDKATTTRRSQNSLSATF
BLAST of CmaCh04G013110 vs. TrEMBL
Match: A0A0A0LS96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.6e-52
Identity = 99/162 (61.11%), Postives = 121/162 (74.69%), Query Frame = 1

Query: 1   MESCNNNGNPEILYRKGMLEFFTHYREASGMTYLKLYAQKGYSETCYVYDIILYATSLED 60
           ME+CNN+ NPE LYRKGMLEFFTH +EASGM YLK  AQKGY + CYV+ +ILYA++L+D
Sbjct: 100 METCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKD 159

Query: 61  EGVKFLKICEAKLGLKRAECRRRVKEFVCNLWVKNNIPLSEKDFGDRRECESVVKNTCKK 120
           EG++FLK  E KLG K  ECR+RVKEFV  +W+KN I LSE D    R+C+  +   C+ 
Sbjct: 160 EGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNI--NCRV 219

Query: 121 NVRRIRWDGNDGDDYYGEHTCEACKWNEEVLRFCNMLRTGSY 163
           N +   WD  D DDYYG++TCE CKWN EVLRFC MLRTG +
Sbjct: 220 NEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRTGRF 259

BLAST of CmaCh04G013110 vs. TrEMBL
Match: A5AV49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.2e-18
Identity = 60/169 (35.50%), Postives = 87/169 (51.48%), Query Frame = 1

Query: 1   MESCNNNGNPEILYRKGMLEFFTHYREASGMTYLKLYAQKGYSETCYVYDIILY---ATS 60
           +++C  +GNPE+LYR+GM+EFF+  +  S   YLK   + G+ E  YVY IIL      S
Sbjct: 82  LKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVYGIILLCKGGDS 141

Query: 61  LEDEGVKFLKICEAKLGLKRAECRRRVKEFVCNLWVKNNIPLSEKDFGDRRECESVVKNT 120
            E++G+K L     K   K  ECR+R + F  ++W++N I   +       E  S   NT
Sbjct: 142 NEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPIVKCQ-------ELTSYHANT 201

Query: 121 CKK-------NVRRIRWDGNDGD-DYYGEHTCEACKWNEEVLRFCNMLR 159
           C +         R   W  +D D D    + CEAC W++EV  FC + R
Sbjct: 202 CGRRNNGGIGGKRGWPWIEDDEDKDVEEVNYCEACIWDDEVSLFCKLFR 241

BLAST of CmaCh04G013110 vs. TrEMBL
Match: A0A0B2P0Z6_GLYSO (Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 56/159 (35.22%), Postives = 81/159 (50.94%), Query Frame = 1

Query: 1   MESCNNNGNPEILYRKGMLEFFTHYREASGMTYLKLYAQKGYSETCYVYDIILYATSLED 60
           ++ C  +GN EILYR+GML++FT  R   G+  LK  A +G+ +  YVY ++L     ED
Sbjct: 90  LKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAKYVYCMLLMCG--ED 149

Query: 61  EGVK---FLKICEAKLGLKRAECRRRVKEFVCNLWVKNNIPLSEKDFGDRRECESVVKNT 120
           EG +   F   C  K       CR+RVK FV ++W+KN  P  +  F     C+S  +  
Sbjct: 150 EGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNK-PNGKSSFCGSGTCDSERQKQ 209

Query: 121 CKKNVRRIRWDGNDGDDYYGEHTCEACKWNEEVLRFCNM 157
             K     RW   +  D  G  +C+ C  + E+  FCNM
Sbjct: 210 LSK-----RWSSFEDKD--GGISCQRCGADHELGFFCNM 238

BLAST of CmaCh04G013110 vs. TrEMBL
Match: I1KMZ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 56/159 (35.22%), Postives = 81/159 (50.94%), Query Frame = 1

Query: 1   MESCNNNGNPEILYRKGMLEFFTHYREASGMTYLKLYAQKGYSETCYVYDIILYATSLED 60
           ++ C  +GN EILYR+GML++FT  R   G+  LK  A +G+ +  YVY ++L     ED
Sbjct: 90  LKRCRESGNSEILYREGMLQYFTSSRVELGLKNLKEAALEGHDDAKYVYCMLLMCG--ED 149

Query: 61  EGVK---FLKICEAKLGLKRAECRRRVKEFVCNLWVKNNIPLSEKDFGDRRECESVVKNT 120
           EG +   F   C  K       CR+RVK FV ++W+KN  P  +  F     C+S  +  
Sbjct: 150 EGQRKQGFDLFCSLKESTSVIRCRKRVKSFVRSMWLKNK-PNGKSSFCGSGTCDSERQKQ 209

Query: 121 CKKNVRRIRWDGNDGDDYYGEHTCEACKWNEEVLRFCNM 157
             K     RW   +  D  G  +C+ C  + E+  FCNM
Sbjct: 210 LSK-----RWSSFEDKD--GGISCQRCGADHELGFFCNM 238

BLAST of CmaCh04G013110 vs. TrEMBL
Match: B9I6Z5_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.0e-13
Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = 1

Query: 4   CNNNGNPEILYRKGMLEFFTHYREASGMTYLKLYAQKGYSETCYVYDIIL--YATSLEDE 63
           C  NGNPE L+R+GM+EFF+  +  SG  +LK  A+KG+ E  Y   +IL  +    + E
Sbjct: 83  CKENGNPEALFRQGMVEFFSSNKPESGFQHLKNAARKGHVEAIYTCGVILVCHGGQFKQE 142

Query: 64  GVKFLKICEAKLGLKRA--ECRRRVKEFVCNLWVKNNIPLSEKDFGDRRECESVVKNTCK 123
           G++ L   +      R   ECR ++KE + ++W+       E   G            C 
Sbjct: 143 GIELLSSLKNYKSRHRTIKECRDKIKEILQSMWIDRR----EAGIGPEEPKSHGRTCNCS 202

Query: 124 KNVRRIRWDGNDGDDYYGEHTCEACKWNEEVLRFCNMLRTGSYDI 165
           K  +R  W   D ++Y    TC+ C W+ E   FC +LR   + I
Sbjct: 203 KFNKR-GW--IDEEEY---TTCDYCVWDHEATLFCKILRARGFGI 237

BLAST of CmaCh04G013110 vs. NCBI nr
Match: gi|449439561|ref|XP_004137554.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 3.7e-52
Identity = 99/162 (61.11%), Postives = 121/162 (74.69%), Query Frame = 1

Query: 1   MESCNNNGNPEILYRKGMLEFFTHYREASGMTYLKLYAQKGYSETCYVYDIILYATSLED 60
           ME+CNN+ NPE LYRKGMLEFFTH +EASGM YLK  AQKGY + CYV+ +ILYA++L+D
Sbjct: 100 METCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFGVILYASNLKD 159

Query: 61  EGVKFLKICEAKLGLKRAECRRRVKEFVCNLWVKNNIPLSEKDFGDRRECESVVKNTCKK 120
           EG++FLK  E KLG K  ECR+RVKEFV  +W+KN I LSE D    R+C+  +   C+ 
Sbjct: 160 EGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDSSYGRKCDKNI--NCRV 219

Query: 121 NVRRIRWDGNDGDDYYGEHTCEACKWNEEVLRFCNMLRTGSY 163
           N +   WD  D DDYYG++TCE CKWN EVLRFC MLRTG +
Sbjct: 220 NEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRTGRF 259

BLAST of CmaCh04G013110 vs. NCBI nr
Match: gi|449435498|ref|XP_004135532.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 4.1e-51
Identity = 98/162 (60.49%), Postives = 119/162 (73.46%), Query Frame = 1

Query: 1   MESCNNNGNPEILYRKGMLEFFTHYREASGMTYLKLYAQKGYSETCYVYDIILYATSLED 60
           ME+ NNN NPE LYRKG +EFF+H +EASG++YLK  AQKGY + CYVY +++YA +L++
Sbjct: 101 METLNNNENPESLYRKGTMEFFSHGKEASGLSYLKQSAQKGYVDACYVYGVVMYAANLKE 160

Query: 61  EGVKFLKICEAKLGLKRAECRRRVKEFVCNLWVKNNIPLSEKDFGDRRECESVVKNTCKK 120
           EGV++LK+CEAKLG K AECRRRVKEFV   W+KN I +S      +  C +V    CK 
Sbjct: 161 EGVEYLKMCEAKLGNKMAECRRRVKEFVWYFWIKNRISMS------KEICSNV---NCKV 220

Query: 121 NVRRIRWDGNDGDDYYGEHTCEACKWNEEVLRFCNMLRTGSY 163
           N R   WD  D DDYYGEHTCE CKW+ EVLRFCNMLR G Y
Sbjct: 221 NERSNGWDWKDEDDYYGEHTCEQCKWSNEVLRFCNMLRRGGY 253

BLAST of CmaCh04G013110 vs. NCBI nr
Match: gi|659107472|ref|XP_008453691.1| (PREDICTED: putative F-box protein At1g67623 [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 7.0e-51
Identity = 101/162 (62.35%), Postives = 117/162 (72.22%), Query Frame = 1

Query: 1   MESCNNNGNPEILYRKGMLEFFTHYREASGMTYLKLYAQKGYSETCYVYDIILYATSLED 60
           +E+CNNN NPE LYRKGMLEFFTH +EASG+ YLKL AQKGY + CYV  +ILYA+  +D
Sbjct: 99  IETCNNNENPESLYRKGMLEFFTHCKEASGLAYLKLSAQKGYVDACYVCSVILYASKAKD 158

Query: 61  EGVKFLKICEAKLGLKRAECRRRVKEFVCNLWVKNNIPLSEKDFGDRRECESVVKNTCKK 120
           EG +FLK  EAKL  K AECR RVK FV  LW+KN I  S +D  DR+ C+  +   C+ 
Sbjct: 159 EGFEFLKNHEAKLRNKMAECRWRVKRFVSYLWIKNRISSSGEDPNDRK-CDKNI--NCRV 218

Query: 121 NVRRIRWDGNDGDDYYGEHTCEACKWNEEVLRFCNMLRTGSY 163
           N RR  WD  D DDYYGE+TCE CKWN EV RFC MLRTG Y
Sbjct: 219 NERRNSWDWKDEDDYYGEYTCEKCKWNNEVFRFCKMLRTGRY 257

BLAST of CmaCh04G013110 vs. NCBI nr
Match: gi|802724919|ref|XP_012085893.1| (PREDICTED: putative F-box protein At1g67623 [Jatropha curcas])

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 67/187 (35.83%), Postives = 95/187 (50.80%), Query Frame = 1

Query: 4   CNNNGNPEILYRKGMLEFFTHYRE----------ASGMTYLKLYAQKGYSETCYVYDIIL 63
           C  +GNPE L+R+GM+++F+  ++          ASG+  LK  A+KG+ E  YV  IIL
Sbjct: 91  CKRSGNPEALFRRGMVDYFSKPKQRESGLDFLEKASGLELLKEAAKKGHMEANYVCGIIL 150

Query: 64  --YATSLEDEGVKFL-KICEAKLGLKRAECRRRVKEFVCNLWVKNNIPLSEKDFGDRRE- 123
             Y   L  EG+K L K   + L L   +CR++V++ V N+WV +NI      FG   E 
Sbjct: 151 VCYGGELRKEGLKLLSKFERSNLSLVITDCRKKVRDLVKNIWVDDNI----FGFGPEEEE 210

Query: 124 ----------CESVVKNTCKKNVRRIRWDGNDGDDYYGEHT--CEACKWNEEVLRFCNML 165
                     C S  K  C   V   RW  +   DY+ + +  C++C W  E  RF NML
Sbjct: 211 ECRISIKSCSCNSKKKAVCSFTVAGSRWTMDS--DYFEDDSSLCDSCLWRREATRFLNML 270

BLAST of CmaCh04G013110 vs. NCBI nr
Match: gi|147773103|emb|CAN71689.1| (hypothetical protein VITISV_039291 [Vitis vinifera])

HSP 1 Score: 99.8 bits (247), Expect = 6.0e-18
Identity = 60/169 (35.50%), Postives = 87/169 (51.48%), Query Frame = 1

Query: 1   MESCNNNGNPEILYRKGMLEFFTHYREASGMTYLKLYAQKGYSETCYVYDIILY---ATS 60
           +++C  +GNPE+LYR+GM+EFF+  +  S   YLK   + G+ E  YVY IIL      S
Sbjct: 82  LKACKESGNPEVLYRQGMMEFFSWKKVESXEEYLKRAMEMGHMEASYVYGIILLCKGGDS 141

Query: 61  LEDEGVKFLKICEAKLGLKRAECRRRVKEFVCNLWVKNNIPLSEKDFGDRRECESVVKNT 120
            E++G+K L     K   K  ECR+R + F  ++W++N I   +       E  S   NT
Sbjct: 142 NEEQGMKLLN--AVKKSRKLGECRKRTRAFTLSMWIRNPIVKCQ-------ELTSYHANT 201

Query: 121 CKK-------NVRRIRWDGNDGD-DYYGEHTCEACKWNEEVLRFCNMLR 159
           C +         R   W  +D D D    + CEAC W++EV  FC + R
Sbjct: 202 CGRRNNGGIGGKRGWPWIEDDEDKDVEEVNYCEACIWDDEVSLFCKLFR 241

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LS96_CUCSA2.6e-5261.11Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025065 PE=4 SV=1[more]
A5AV49_VITVI4.2e-1835.50Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039291 PE=4 SV=1[more]
A0A0B2P0Z6_GLYSO1.2e-1435.22Putative F-box protein OS=Glycine soja GN=glysoja_009836 PE=4 SV=1[more]
I1KMZ2_SOYBN1.2e-1435.22Uncharacterized protein OS=Glycine max GN=GLYMA_07G247800 PE=4 SV=2[more]
B9I6Z5_POPTR9.0e-1331.52F-box family protein OS=Populus trichocarpa GN=POPTR_0013s01020g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449439561|ref|XP_004137554.1|3.7e-5261.11PREDICTED: putative F-box protein At1g67623 [Cucumis sativus][more]
gi|449435498|ref|XP_004135532.1|4.1e-5160.49PREDICTED: putative F-box protein At1g67623 [Cucumis sativus][more]
gi|659107472|ref|XP_008453691.1|7.0e-5162.35PREDICTED: putative F-box protein At1g67623 [Cucumis melo][more]
gi|802724919|ref|XP_012085893.1|2.4e-1935.83PREDICTED: putative F-box protein At1g67623 [Jatropha curcas][more]
gi|147773103|emb|CAN71689.1|6.0e-1835.50hypothetical protein VITISV_039291 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G013110.1CmaCh04G013110.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33784FAMILY NOT NAMEDcoord: 1..162
score: 4.0
NoneNo IPR availablePANTHERPTHR33784:SF4SUBFAMILY NOT NAMEDcoord: 1..162
score: 4.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None