CmaCh04G012160 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G012160
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionViolaxanthin de-epoxidase, chloroplastic
LocationCma_Chr04 : 6205208 .. 6206292 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCTTGAAGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGTGCCCACTGCACGGCTCCGTGATTCAGAAGTCGACCGTGGTTGCTCTTATATAGCAGCTGGCCAGGTTCTTCACCTCACTGAGTTCCGATGTGGGAATTCCACCTTCTAAGTTCTCCCTAGTTTCTGTCTATGAAAACCCAATAGGATGCGAACGTGAGATCACTCCCAGTTTCTATTAACTTATTTTATAATAATACAAAAATATTCCGAATTTGTTTTCGGAAGAGTAATAAATTTCGTTTTTATTTATGTACAGATATTATAAATTTATCATCAACATCTCCCTAGGAAAAAGATGATTCTAATGCTGACGGTCATTCCTCAACAATTTTCTCCTCGAACAAAGTACACTATAAACCTTCTCTTAGGCTTATGGAGCTCTCGAACAACCTTCTCTTAATCGAGGCTCGACTCCTTTCTTTGGAGCTCTCGTATACAGTACATCATTTGTTCTACACTTTGGTCACTTTTAACTATACCTTCGAGACTCATAATTTTTGTTCAATATTTGAAGATTCTATTGTATTTATTCAGTTCTTTATTCAGTTTAGGACAAGATTCTAATAACATGATAGGATTTTATTGTCATGGTATGATGCTAATCGGTTAGATACCATGATAAGATAAGATTCTATTGTCATGGTATGATGCTAATTGGACCCCTGTATCGAACAATGAACGATCCAGAAACTCCATAATTCAAAGCCAATCCTCCAGAATAAATAAATATATCAACCAATGAGATTGATAAGTACTTGGAAACTATTAATTTACTAGATATCCATTATTAATAAACATTCACTTAAATTGATGTAGGAGCCACTCTCGAAAGAGGGACCCTCCAAAAATAGGCGTATGCCGCTTGTGGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGTGCTCACCGCACGGCTCCGTGAGTTTGGCATCCAAGCGCCGCCGCACTTATATAAGCGCTGGATGGAATCACGATACCCAGTTTTCGATGTGGGATTTTAG

mRNA sequence

ATGCCGCTTGAAGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGTGCCCACTGCACGGCTCCGTGATTCAGAAGTCGACCGTGGTTGCTCTTATATAGCAGCTGGCCAGGAGCCACTCTCGAAAGAGGGACCCTCCAAAAATAGGCGTATGCCGCTTGTGGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGTGCTCACCGCACGGCTCCGTGAGTTTGGCATCCAAGCGCCGCCGCACTTATATAAGCGCTGGATGGAATCACGATACCCAGTTTTCGATGTGGGATTTTAG

Coding sequence (CDS)

ATGCCGCTTGAAGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGTGCCCACTGCACGGCTCCGTGATTCAGAAGTCGACCGTGGTTGCTCTTATATAGCAGCTGGCCAGGAGCCACTCTCGAAAGAGGGACCCTCCAAAAATAGGCGTATGCCGCTTGTGGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGTGCTCACCGCACGGCTCCGTGAGTTTGGCATCCAAGCGCCGCCGCACTTATATAAGCGCTGGATGGAATCACGATACCCAGTTTTCGATGTGGGATTTTAG

Protein sequence

MPLEAASTRYSLVKGERIVRSVPTARLRDSEVDRGCSYIAAGQEPLSKEGPSKNRRMPLVAASTRYSLVKGERIVRSVLTARLREFGIQAPPHLYKRWMESRYPVFDVGF
Homology
[Close]
BLAST of CmaCh04G012160 vs. TrEMBL
Match: A0A0B0PNT1_GOSAR (Violaxanthin de-epoxidase, chloroplastic OS=Gossypium arboreum GN=F383_07932 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-07
Identity = 34/47 (72.34%), Postives = 36/47 (76.60%), Query Frame = 1 

Query: 49  EGPSKNRRMPLVAASTRYSLVKGERIVRSVLTARLREFGIQAPPHLY 96
           E PSKNRRMPL AASTRYSLVKGERIVR VL ARL +F I     +Y
Sbjct: 522 EPPSKNRRMPLRAASTRYSLVKGERIVRFVLIARLLDFYISISSLIY 568

[Close]
BLAST of CmaCh04G012160 vs. NCBI nr
Match: gi|728847202|gb|KHG26645.1| (Violaxanthin de-epoxidase, chloroplastic [Gossypium arboreum])

HSP 1 Score: 62.0 bits (149), Expect = 7.5e-07
Identity = 34/47 (72.34%), Postives = 36/47 (76.60%), Query Frame = 1 

Query: 49  EGPSKNRRMPLVAASTRYSLVKGERIVRSVLTARLREFGIQAPPHLY 96
           E PSKNRRMPL AASTRYSLVKGERIVR VL ARL +F I     +Y
Sbjct: 522 EPPSKNRRMPLRAASTRYSLVKGERIVRFVLIARLLDFYISISSLIY 568

The following BLAST results are available for this feature:
BLAST of CmaCh04G012160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B0PNT1_GOSAR5.2e-0772.34Violaxanthin de-epoxidase, chloroplastic OS=Gossypium arboreum GN=F383_07932 PE=... [more]
BLAST of CmaCh04G012160 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|728847202|gb|KHG26645.1|7.5e-0772.34Violaxanthin de-epoxidase, chloroplastic [Gossypium arboreum][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G012160.1CmaCh04G012160.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G012160Lsi04G008450Bottle gourd (USVL1VR-Ls)cmalsiB676
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G012160Cucumber (Chinese Long) v3cmacucB0884
CmaCh04G012160Cucumber (Chinese Long) v3cmacucB0832
CmaCh04G012160Cucumber (Chinese Long) v3cmacucB0853
CmaCh04G012160Cucumber (Chinese Long) v3cmacucB0916
CmaCh04G012160Watermelon (97103) v2cmawmbB719
CmaCh04G012160Watermelon (97103) v2cmawmbB740
CmaCh04G012160Watermelon (97103) v2cmawmbB742
CmaCh04G012160Watermelon (97103) v2cmawmbB753
CmaCh04G012160Wax gourdcmawgoB0825
CmaCh04G012160Wax gourdcmawgoB0879
CmaCh04G012160Wax gourdcmawgoB0881
CmaCh04G012160Wax gourdcmawgoB0892
CmaCh04G012160Cucurbita maxima (Rimu)cmacmaB272
CmaCh04G012160Cucurbita maxima (Rimu)cmacmaB487
CmaCh04G012160Cucurbita maxima (Rimu)cmacmaB516
CmaCh04G012160Cucurbita maxima (Rimu)cmacmaB531
CmaCh04G012160Cucurbita maxima (Rimu)cmacmaB549
CmaCh04G012160Cucumber (Gy14) v1cgycmaB0472
CmaCh04G012160Cucumber (Gy14) v1cgycmaB1049
CmaCh04G012160Cucurbita moschata (Rifu)cmacmoB720
CmaCh04G012160Cucurbita moschata (Rifu)cmacmoB723
CmaCh04G012160Cucurbita moschata (Rifu)cmacmoB726
CmaCh04G012160Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G012160Cucurbita moschata (Rifu)cmacmoB731
CmaCh04G012160Wild cucumber (PI 183967)cmacpiB729
CmaCh04G012160Wild cucumber (PI 183967)cmacpiB756
CmaCh04G012160Cucumber (Chinese Long) v2cmacuB720
CmaCh04G012160Cucumber (Chinese Long) v2cmacuB746
CmaCh04G012160Melon (DHL92) v3.5.1cmameB652
CmaCh04G012160Melon (DHL92) v3.5.1cmameB714
CmaCh04G012160Watermelon (Charleston Gray)cmawcgB641
CmaCh04G012160Watermelon (Charleston Gray)cmawcgB652
CmaCh04G012160Watermelon (97103) v1cmawmB723
CmaCh04G012160Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G012160Cucurbita pepo (Zucchini)cmacpeB723
CmaCh04G012160Cucurbita pepo (Zucchini)cmacpeB739
CmaCh04G012160Cucurbita pepo (Zucchini)cmacpeB752
CmaCh04G012160Bottle gourd (USVL1VR-Ls)cmalsiB631
CmaCh04G012160Bottle gourd (USVL1VR-Ls)cmalsiB642
CmaCh04G012160Bottle gourd (USVL1VR-Ls)cmalsiB666
CmaCh04G012160Cucumber (Gy14) v2cgybcmaB412
CmaCh04G012160Cucumber (Gy14) v2cgybcmaB555
CmaCh04G012160Cucumber (Gy14) v2cgybcmaB673
CmaCh04G012160Melon (DHL92) v3.6.1cmamedB739
CmaCh04G012160Melon (DHL92) v3.6.1cmamedB771
CmaCh04G012160Melon (DHL92) v3.6.1cmamedB802
CmaCh04G012160Silver-seed gourdcarcmaB0428
CmaCh04G012160Silver-seed gourdcarcmaB1199