CmaCh04G011510 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G011510
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNodulin MtN21/EamA-like transporter family protein
LocationCma_Chr04 : 5894980 .. 5895796 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTGATTTCAGGCTTCTTCGCTTCCACTTTCGGTACTGTCACAGTAAGAACTCCGTTCTCCATTCTGGCCTTCACCTCCTCAACTTTGGCATCTTCTGGGAGCCTAAATCTCCTCATGAACTTCCCACTGCTCCGCTCAATTCTATGCCATTTCTCATTCTTCTCCTCCTGTTCTTTGCTTCTCTCTCCACTGATCTGCAAAACTCTGCCTTCTTCAACCTCAACTTTGAGTTGGTCTTTGTTGATCCCAGGGAGATCGGCTGTGAAGATGTGGGCTTGCGGTGTCTCCTTCCAGTCGATGCGAGTGTTAGCAAAAGCAGAGGTCTCCCGGGCGGAGGAAGGCACGTTAGCCGGTGAAAAGCCTTGGAAAGGATCCCAGGCGTCCAATGAGAAGGGGTCGAAGATGTTGCTCCGGCGGCCACCGAAAATGCTGGGAACCAGGGCCATGGTTTTGTTGGCTGTTGATGGCTTTGTAAAAAGAGTGCTAAAGATGTGGATGTTTGAACGAGTTTATACTTCGTTTCTTGTTAGCTGATTGTGCACATCCAAGGCTTTAAATAGACTTCTAGGAAACGTAGAAAATGTAGAAACTTCCGGAATCTTCTCCAACCTTCACGATCTATTTGGAATTGGAATTGGGATTTCCATTTTTATTTTTTGTTTATCGATTTTTCTAATTACATATTTATGGTTAAATTCAATTACTTGATTGTACTCCTTGTACGATGATGGATTGGGCCTCAAGTATTGCGCAGAATGGGTCCAAATCCATGGAGAAAATTGTAGAGGCTCATGGAAACCAGAAAAGCTGA

mRNA sequence

ATGGACTTGATTTCAGGCTTCTTCGCTTCCACTTTCGGGAGATCGGCTGTGAAGATGTGGGCTTGCGGTGTCTCCTTCCAGTCGATGCGAGTGTTAGCAAAAGCAGAGGTCTCCCGGGCGGAGGAAGGCACGTTAGCCGGTGAAAAGCCTTGGAAAGGATCCCAGGCGTCCAATGAGAAGGGGTCGAAGATGTTGCTCCGGCGGCCACCGAAAATGCTGGGAACCAGGGCCATGAATGGGTCCAAATCCATGGAGAAAATTGTAGAGGCTCATGGAAACCAGAAAAGCTGA

Coding sequence (CDS)

ATGGACTTGATTTCAGGCTTCTTCGCTTCCACTTTCGGGAGATCGGCTGTGAAGATGTGGGCTTGCGGTGTCTCCTTCCAGTCGATGCGAGTGTTAGCAAAAGCAGAGGTCTCCCGGGCGGAGGAAGGCACGTTAGCCGGTGAAAAGCCTTGGAAAGGATCCCAGGCGTCCAATGAGAAGGGGTCGAAGATGTTGCTCCGGCGGCCACCGAAAATGCTGGGAACCAGGGCCATGAATGGGTCCAAATCCATGGAGAAAATTGTAGAGGCTCATGGAAACCAGAAAAGCTGA

Protein sequence

MDLISGFFASTFGRSAVKMWACGVSFQSMRVLAKAEVSRAEEGTLAGEKPWKGSQASNEKGSKMLLRRPPKMLGTRAMNGSKSMEKIVEAHGNQKS
Homology
[Close]
BLAST of CmaCh04G011510 vs. TrEMBL
Match: A0A0A0KSC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197120 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.3e-21
Identity = 60/70 (85.71%), Postives = 61/70 (87.14%), Query Frame = 1 

Query: 13  GRSAVKMWACGVSFQSMRVLAKAEVSRAEEGTLAGE----KPWKGSQASNEKGSKMLLRR 72
           GRSA+KMWACGVSFQSMRVLAKAEVSRAEEG LA E    KP KGSQ SNEKGSK LLRR
Sbjct: 88  GRSALKMWACGVSFQSMRVLAKAEVSRAEEGALAKEFEKGKPSKGSQMSNEKGSKTLLRR 147

Query: 73  PPKMLGTRAM 79
           PPKMLGTRAM
Sbjct: 148 PPKMLGTRAM 157

[Close]
BLAST of CmaCh04G011510 vs. TrEMBL
Match: A0A103YMN4_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_009654 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.6e-06
Identity = 39/72 (54.17%), Postives = 44/72 (61.11%), Query Frame = 1 

Query: 8   FASTF---GRSAVKMWACGVSFQSMRVLAKAEVS--RAEEGTLAGEKPWKGSQASNEKGS 67
           F S+F   GRSA+K  A GVSFQS RV  KAEVS   ++   +   K   GSQ S   GS
Sbjct: 226 FTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQESDPDEVGKGKSLNGSQISMANGS 285

Query: 68  KMLLRRPPKMLG 75
           KML RRPPK LG
Sbjct: 286 KMLFRRPPKKLG 297

[Close]
BLAST of CmaCh04G011510 vs. NCBI nr
Match: gi|700195444|gb|KGN50621.1| (hypothetical protein Csa_5G197120 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-21
Identity = 60/70 (85.71%), Postives = 61/70 (87.14%), Query Frame = 1 

Query: 13  GRSAVKMWACGVSFQSMRVLAKAEVSRAEEGTLAGE----KPWKGSQASNEKGSKMLLRR 72
           GRSA+KMWACGVSFQSMRVLAKAEVSRAEEG LA E    KP KGSQ SNEKGSK LLRR
Sbjct: 88  GRSALKMWACGVSFQSMRVLAKAEVSRAEEGALAKEFEKGKPSKGSQMSNEKGSKTLLRR 147

Query: 73  PPKMLGTRAM 79
           PPKMLGTRAM
Sbjct: 148 PPKMLGTRAM 157

[Close]
BLAST of CmaCh04G011510 vs. NCBI nr
Match: gi|976929048|gb|KVI11914.1| (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 58.2 bits (139), Expect = 9.4e-06
Identity = 39/72 (54.17%), Postives = 44/72 (61.11%), Query Frame = 1 

Query: 8   FASTF---GRSAVKMWACGVSFQSMRVLAKAEVS--RAEEGTLAGEKPWKGSQASNEKGS 67
           F S+F   GRSA+K  A GVSFQS RV  KAEVS   ++   +   K   GSQ S   GS
Sbjct: 226 FTSSFLIPGRSALKTCASGVSFQSTRVFTKAEVSLQESDPDEVGKGKSLNGSQISMANGS 285

Query: 68  KMLLRRPPKMLG 75
           KML RRPPK LG
Sbjct: 286 KMLFRRPPKKLG 297

The following BLAST results are available for this feature:
BLAST of CmaCh04G011510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G011510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSC0_CUCSA3.3e-2185.71Uncharacterized protein OS=Cucumis sativus GN=Csa_5G197120 PE=4 SV=1[more]
A0A103YMN4_CYNCS6.6e-0654.17Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0... [more]
BLAST of CmaCh04G011510 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G011510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195444|gb|KGN50621.1|4.7e-2185.71hypothetical protein Csa_5G197120 [Cucumis sativus][more]
gi|976929048|gb|KVI11914.1|9.4e-0654.17hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G011510.1CmaCh04G011510.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G011510Cucurbita maxima (Rimu)cmacmaB272
CmaCh04G011510Cucurbita maxima (Rimu)cmacmaB326
CmaCh04G011510Cucurbita maxima (Rimu)cmacmaB516
CmaCh04G011510Cucurbita maxima (Rimu)cmacmaB531
CmaCh04G011510Cucurbita maxima (Rimu)cmacmaB533
CmaCh04G011510Cucumber (Gy14) v1cgycmaB0375
CmaCh04G011510Cucumber (Gy14) v1cgycmaB0472
CmaCh04G011510Cucurbita moschata (Rifu)cmacmoB695
CmaCh04G011510Cucurbita moschata (Rifu)cmacmoB726
CmaCh04G011510Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G011510Cucurbita moschata (Rifu)cmacmoB731
CmaCh04G011510Cucurbita moschata (Rifu)cmacmoB734
CmaCh04G011510Wild cucumber (PI 183967)cmacpiB756
CmaCh04G011510Wild cucumber (PI 183967)cmacpiB783
CmaCh04G011510Cucumber (Chinese Long) v2cmacuB690
CmaCh04G011510Cucumber (Chinese Long) v2cmacuB746
CmaCh04G011510Cucumber (Chinese Long) v2cmacuB772
CmaCh04G011510Melon (DHL92) v3.5.1cmameB655
CmaCh04G011510Melon (DHL92) v3.5.1cmameB682
CmaCh04G011510Melon (DHL92) v3.5.1cmameB686
CmaCh04G011510Watermelon (Charleston Gray)cmawcgB624
CmaCh04G011510Watermelon (Charleston Gray)cmawcgB673
CmaCh04G011510Watermelon (97103) v1cmawmB673
CmaCh04G011510Watermelon (97103) v1cmawmB678
CmaCh04G011510Watermelon (97103) v1cmawmB690
CmaCh04G011510Watermelon (97103) v1cmawmB740
CmaCh04G011510Cucurbita pepo (Zucchini)cmacpeB729
CmaCh04G011510Cucurbita pepo (Zucchini)cmacpeB708
CmaCh04G011510Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G011510Cucurbita pepo (Zucchini)cmacpeB723
CmaCh04G011510Cucurbita pepo (Zucchini)cmacpeB757
CmaCh04G011510Bottle gourd (USVL1VR-Ls)cmalsiB642
CmaCh04G011510Bottle gourd (USVL1VR-Ls)cmalsiB659
CmaCh04G011510Bottle gourd (USVL1VR-Ls)cmalsiB676
CmaCh04G011510Cucumber (Gy14) v2cgybcmaB412
CmaCh04G011510Cucumber (Gy14) v2cgybcmaB556
CmaCh04G011510Cucumber (Gy14) v2cgybcmaB673
CmaCh04G011510Cucumber (Gy14) v2cgybcmaB840
CmaCh04G011510Melon (DHL92) v3.6.1cmamedB741
CmaCh04G011510Melon (DHL92) v3.6.1cmamedB766
CmaCh04G011510Melon (DHL92) v3.6.1cmamedB803
CmaCh04G011510Silver-seed gourdcarcmaB0034
CmaCh04G011510Silver-seed gourdcarcmaB0116
CmaCh04G011510Silver-seed gourdcarcmaB0375
CmaCh04G011510Silver-seed gourdcarcmaB0948
CmaCh04G011510Cucumber (Chinese Long) v3cmacucB0884
CmaCh04G011510Cucumber (Chinese Long) v3cmacucB0912
CmaCh04G011510Watermelon (97103) v2cmawmbB719
CmaCh04G011510Watermelon (97103) v2cmawmbB727
CmaCh04G011510Watermelon (97103) v2cmawmbB754
CmaCh04G011510Watermelon (97103) v2cmawmbB780
CmaCh04G011510Wax gourdcmawgoB0864
CmaCh04G011510Wax gourdcmawgoB0889