CmaCh04G008720 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G008720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2
Location	Cma_Chr04 : 4477598 .. 4478589 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGGTTCAAACCCTTCTTTTTCATTCAATTAGCCATAAATTAGTGTTTATGTTTGTAATTTTAATTCATAAAACTGATTACTTCTTGGGTCTGGCAAGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCGCAGAGGCAAGTTCTTTTTTTGACTGGAAACCTTAATTACAAACTTAATTTACTATAAGAGATGATCCAAGATTCTTTTTACAATGAATCTATGCCTATCGGCTTTATGTGTAACTCCAATGCTTGATGATTCACTCTTACGAATTCAATCCCAAACCGATCTTGGGCATGCTGTGTAGTTCCATTAGGAAGTTTGTCATCATTTCAAATTGCAGCAAATGATCGTAATGAGTTGCTTCCAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGTTCGAGTGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTCTGTTTTTCTATTTGCTCCTTTTGGTAATACAAAAACTGTGTCCGGCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTACAAAAAAAAGAAGGTTAATGTTATTCTCCCATTCAGTTCGTCTTAATTCAGTGTACTTTACGAATATTTATCCCTAATTTTCATTTATTGTGTTGTTCTATTTATGGTTTTCTCTTTCTTATTGATATTCATTTAGGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGGTGA

mRNA sequence

ATGGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCGCAGAGGCAAGAAGTTTGTCATCATTTCAAATTGCAGCAAATGATCGTAATGAGTTGCTTCCAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGGTGA

Coding sequence (CDS)

ATGGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCGCAGAGGCAAGAAGTTTGTCATCATTTCAAATTGCAGCAAATGATCGTAATGAGTTGCTTCCAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGGTGA

Protein sequence

MGSRLYLTWGILWSFPELGIMYLFPPWSSAGLSQRQEVCHHFKLQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRSKALSKSKKENVFHILFNHLILFYVMKEDGAVEEVAAQITHKIRVGGILDKVEKPPNQRDQFRG

Homology

[Close]

BLAST of CmaCh04G008720 vs. Swiss-Prot
Match: HACDA_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-17
Identity = 56/146 (38.36%), Postives = 70/146 (47.95%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELG-----------------IMYLF----------PPWS----- 60
           +GSRL+LTWGILWSFPE                   I Y F          P W      
Sbjct: 81  IGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRY 140

Query: 61  -------SAGLSQRQEVCHHFKLQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLIL 108
                    G+S    + +       I +   + S KY   MPN+WNFSFD+ Y ++L L
Sbjct: 141 STFMVLYPTGISSEVGLIY-------IALPYMKASEKYCLRMPNKWNFSFDFFYASILSL 200

[Close]

BLAST of CmaCh04G008720 vs. Swiss-Prot
Match: HACDB_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica GN=PAS2B PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-16
Identity = 55/146 (37.67%), Postives = 70/146 (47.95%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELG-----------------IMYLF----------PPWS----- 60
           +GSRL+LTWGILWSFPE                   I Y F          P W      
Sbjct: 81  IGSRLFLTWGILWSFPETHSHILVTSLVISWSITEIIRYSFFGMKETFGFAPSWLLWLRY 140

Query: 61  -------SAGLSQRQEVCHHFKLQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLIL 108
                    G+S    + +       I +   + + KY   MPN+WNFSFD+ Y ++L L
Sbjct: 141 STFMVLYPTGISSEVGLIY-------IALPYMKATEKYCLRMPNKWNFSFDFSYASILSL 200

[Close]

BLAST of CmaCh04G008720 vs. Swiss-Prot
Match: HACD_ARATH (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-16
Identity = 59/142 (41.55%), Postives = 72/142 (50.70%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELG-----------------IMYLF----------PPW------ 60
           +GSRL+LTWGIL+SFPE+                  I Y F          P W      
Sbjct: 81  IGSRLFLTWGILYSFPEVRSHFLVTSLVISWSITEIIRYSFFGFKEALGFAPSWHLWLRY 140

Query: 61  SSAGLSQRQEVCHHFKLQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPG 110
           SS  L     +     L  +  +   + S  YS  MPN  NFSFD+ Y  +L+LA YVPG
Sbjct: 141 SSFLLLYPTGITSEVGLIYL-ALPHIKTSEMYSVRMPNILNFSFDFFYATILVLAIYVPG 200

[Close]

BLAST of CmaCh04G008720 vs. Swiss-Prot
Match: HACD2_BOVIN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Bos taurus GN=HACD2 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-06
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 54  QESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRSKALSKSKKENVF 113
           +++G YS S+PN++NFSFDY    +LI+  Y+P  P +Y  M+ QR K LS +++   F
Sbjct: 195 RQAGLYSISLPNKYNFSFDYYAFLILIMISYIPLFPQLYFHMIHQRRKILSHTEEHKKF 253

[Close]

BLAST of CmaCh04G008720 vs. Swiss-Prot
Match: HACD2_HUMAN (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Homo sapiens GN=HACD2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.5e-06
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 54  QESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRSKALSKSKKENVF 113
           +++G YS S+PN++NFSFDY    +LI+  Y+P  P +Y  M+ QR K LS +++   F
Sbjct: 195 RQAGLYSISLPNKYNFSFDYYAFLILIMISYIPIFPQLYFHMIHQRRKILSHTEEHKKF 253

[Close]

BLAST of CmaCh04G008720 vs. TrEMBL
Match: A0A0A0L3F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G114430 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-21
Identity = 64/148 (43.24%), Postives = 78/148 (52.70%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELG----IMYLFPPWSSA-------------------------- 60
           +GSRLY+TWGILWSFPE+     +  L   WS                            
Sbjct: 81  IGSRLYVTWGILWSFPEVRNHILVTSLVISWSITEIIRYAFYGMKETFGFAPSLLIWLRY 140

Query: 61  ---------GLSQRQEVCHHFKLQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLIL 110
                    G+S    + +       + +   +ESGKYS+ MPN+WNFSFDY Y A+L+L
Sbjct: 141 STFLLLYVTGISSEIGLIY-------LALPYMKESGKYSYRMPNKWNFSFDYFYAAILVL 200

[Close]

BLAST of CmaCh04G008720 vs. TrEMBL
Match: A0A0D2TJY6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233000 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.6e-20
Identity = 61/124 (49.19%), Postives = 72/124 (58.06%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELGIMYLF----------PPWSSAGLSQRQEVCHHFKLQQMIVM 60
           +GSRLYLTWGILWSFPE+ I Y F          P W          V +   +   + +
Sbjct: 81  IGSRLYLTWGILWSFPEI-IRYSFFGMKEAFGFAPSWHLWLRYSTFLVLYPTGISSEVGL 140

Query: 61  SCF-----QESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRSKALSK 110
             F     + S KY F MPN+WNFSFDY Y A+L L  YVPGSPH+Y  ML QR +ALSK
Sbjct: 141 IYFALPYIKASEKYCFRMPNKWNFSFDYFYAAILALGIYVPGSPHLYHYMLGQRKRALSK 200

[Close]

BLAST of CmaCh04G008720 vs. TrEMBL
Match: D7U6A1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0313g00040 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 63/142 (44.37%), Postives = 77/142 (54.23%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELG-----------------IMYLF----------PPW------ 60
           +GSRLY+TWGILWSFPE+                  I Y F          P W      
Sbjct: 80  IGSRLYVTWGILWSFPEVQTHVLVSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRY 139

Query: 61  SSAGLSQRQEVCHHFKLQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPG 110
           S+  L     +     L   I +   +ES KY   MPN+WNFSFDY Y A+L++AFYVPG
Sbjct: 140 STFLLLYPTGITSEVGLIY-IALPYIKESAKYCLRMPNKWNFSFDYFYAALLVIAFYVPG 199

[Close]

BLAST of CmaCh04G008720 vs. TrEMBL
Match: V5M181_GOSHI (3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Gossypium hirsutum GN=PAS2-1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 62/141 (43.97%), Postives = 73/141 (51.77%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELG-----------------IMYLF----------PPWSSAGLS 60
           +GSRLYLTWGILWSFPE+                  I Y F          P W      
Sbjct: 81  IGSRLYLTWGILWSFPEIRTHILVTSLVISWAITEIIRYSFFGMKEAFGFAPSWHLWLRY 140

Query: 61  QRQEVCHHFKLQQMIVMSCF-----QESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGS 110
               V +   +   + +  F     + S KY F MPN+WNFSFDY Y A+L L  YVPGS
Sbjct: 141 STFLVLYPTGISSEVGLIYFALPYIKASEKYCFRMPNKWNFSFDYFYAAILALGIYVPGS 200

[Close]

BLAST of CmaCh04G008720 vs. TrEMBL
Match: A5C8R1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031565 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 62/142 (43.66%), Postives = 76/142 (53.52%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELG-----------------IMYLF----------PPW------ 60
           +GSRL +TWGILWSFPE+                  I Y F          P W      
Sbjct: 80  IGSRLXVTWGILWSFPEVQTHVLVSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRY 139

Query: 61  SSAGLSQRQEVCHHFKLQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPG 110
           S+  L     +     L   I +   +ES KY   MPN+WNFSFDY Y A+L++AFYVPG
Sbjct: 140 STFLLLYPTGITSEVGLIY-IALPYIKESAKYCLRMPNKWNFSFDYFYAALLVIAFYVPG 199

[Close]

BLAST of CmaCh04G008720 vs. TAIR10
Match: AT5G10480.3 (AT5G10480.3 Protein-tyrosine phosphatase-like, PTPLA)

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-14
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 56  SGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRSKALSKSKKE 110
           S  YS  MPN  NFSFD+ Y  +L+LA YVPGSPHMYR ML QR +ALSKSK+E
Sbjct: 177 SEMYSVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 230

[Close]

BLAST of CmaCh04G008720 vs. NCBI nr
Match: gi|659102526|ref|XP_008452179.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein])

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-21
Identity = 64/148 (43.24%), Postives = 78/148 (52.70%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELG----IMYLFPPWSSA-------------------------- 60
           +GSRLY+TWGILWSFPE+     +  L   WS                            
Sbjct: 81  IGSRLYVTWGILWSFPEVRNHILVTSLVVSWSITEIIRYAFYGMKETFGFAPSLLLWLRY 140

Query: 61  ---------GLSQRQEVCHHFKLQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLIL 110
                    G+S    + +       + +   +ESGKYS+ MPN+WNFSFDY Y A+L+L
Sbjct: 141 STFLLLYVTGISSEVGLIY-------LALPYMKESGKYSYRMPNKWNFSFDYFYAAILVL 200

[Close]

BLAST of CmaCh04G008720 vs. NCBI nr
Match: gi|449431918|ref|XP_004133747.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 3.6e-21
Identity = 64/148 (43.24%), Postives = 78/148 (52.70%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELG----IMYLFPPWSSA-------------------------- 60
           +GSRLY+TWGILWSFPE+     +  L   WS                            
Sbjct: 81  IGSRLYVTWGILWSFPEVRNHILVTSLVISWSITEIIRYAFYGMKETFGFAPSLLIWLRY 140

Query: 61  ---------GLSQRQEVCHHFKLQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLIL 110
                    G+S    + +       + +   +ESGKYS+ MPN+WNFSFDY Y A+L+L
Sbjct: 141 STFLLLYVTGISSEIGLIY-------LALPYMKESGKYSYRMPNKWNFSFDYFYAAILVL 200

[Close]

BLAST of CmaCh04G008720 vs. NCBI nr
Match: gi|763776882|gb|KJB44005.1| (hypothetical protein B456_007G233000 [Gossypium raimondii])

HSP 1 Score: 106.3 bits (264), Expect = 5.1e-20
Identity = 61/124 (49.19%), Postives = 72/124 (58.06%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELGIMYLF----------PPWSSAGLSQRQEVCHHFKLQQMIVM 60
           +GSRLYLTWGILWSFPE+ I Y F          P W          V +   +   + +
Sbjct: 81  IGSRLYLTWGILWSFPEI-IRYSFFGMKEAFGFAPSWHLWLRYSTFLVLYPTGISSEVGL 140

Query: 61  SCF-----QESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRSKALSK 110
             F     + S KY F MPN+WNFSFDY Y A+L L  YVPGSPH+Y  ML QR +ALSK
Sbjct: 141 IYFALPYIKASEKYCFRMPNKWNFSFDYFYAAILALGIYVPGSPHLYHYMLGQRKRALSK 200

[Close]

BLAST of CmaCh04G008720 vs. NCBI nr
Match: gi|225467969|ref|XP_002269096.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Vitis vinifera])

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-19
Identity = 63/142 (44.37%), Postives = 77/142 (54.23%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELG-----------------IMYLF----------PPW------ 60
           +GSRLY+TWGILWSFPE+                  I Y F          P W      
Sbjct: 80  IGSRLYVTWGILWSFPEVQTHVLVSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRY 139

Query: 61  SSAGLSQRQEVCHHFKLQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPG 110
           S+  L     +     L   I +   +ES KY   MPN+WNFSFDY Y A+L++AFYVPG
Sbjct: 140 STFLLLYPTGITSEVGLIY-IALPYIKESAKYCLRMPNKWNFSFDYFYAALLVIAFYVPG 199

[Close]

BLAST of CmaCh04G008720 vs. NCBI nr
Match: gi|147833954|emb|CAN64341.1| (hypothetical protein VITISV_031565 [Vitis vinifera])

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-18
Identity = 62/142 (43.66%), Postives = 76/142 (53.52%), Query Frame = 1


Query: 1   MGSRLYLTWGILWSFPELG-----------------IMYLF----------PPW------ 60
           +GSRL +TWGILWSFPE+                  I Y F          P W      
Sbjct: 80  IGSRLXVTWGILWSFPEVQTHVLVSSLVISWSITEIIRYSFFGVKELLGFAPAWLLWLRY 139

Query: 61  SSAGLSQRQEVCHHFKLQQMIVMSCFQESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPG 110
           S+  L     +     L   I +   +ES KY   MPN+WNFSFDY Y A+L++AFYVPG
Sbjct: 140 STFLLLYPTGITSEVGLIY-IALPYIKESAKYCLRMPNKWNFSFDYFYAALLVIAFYVPG 199

The following BLAST results are available for this feature:

BLAST of CmaCh04G008720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HACDA_ORYSJ	3.1e-17	38.36	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa...	[more]
HACDB_ORYSJ	1.5e-16	37.67	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa...	[more]
HACD_ARATH	3.4e-16	41.55	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis t...	[more]
HACD2_BOVIN	2.5e-06	42.37	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Bos taurus GN=HACD2 PE=2...	[more]
HACD2_HUMAN	2.5e-06	42.37	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 OS=Homo sapiens GN=HACD2 PE...	[more]

BLAST of CmaCh04G008720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3F8_CUCSA	2.5e-21	43.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G114430 PE=4 SV=1	[more]
A0A0D2TJY6_GOSRA	3.6e-20	49.19	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G233000 PE=4 SV=1	[more]
D7U6A1_VITVI	1.4e-19	44.37	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0313g00040 PE=4 SV=...	[more]
V5M181_GOSHI	1.2e-18	43.97	3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Gossypium hirsutum GN=PAS2-1 PE=2 ...	[more]
A5C8R1_VITVI	1.2e-18	43.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031565 PE=4 SV=1	[more]

BLAST of CmaCh04G008720 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10480.3	2.6e-14	66.67	Protein-tyrosine phosphatase-like, PTPLA	[more]

BLAST of CmaCh04G008720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102526\|ref\|XP_008452179.1\|	2.1e-21	43.24	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]	[more]
gi\|449431918\|ref\|XP_004133747.1\|	3.6e-21	43.24	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cuc...	[more]
gi\|763776882\|gb\|KJB44005.1\|	5.1e-20	49.19	hypothetical protein B456_007G233000 [Gossypium raimondii]	[more]
gi\|225467969\|ref\|XP_002269096.1\|	2.0e-19	44.37	PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Viti...	[more]
gi\|147833954\|emb\|CAN64341.1\|	1.7e-18	43.66	hypothetical protein VITISV_031565 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007482	Tyr_Pase-like_PTPLA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G008720.1	CmaCh04G008720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PANTHER	PTHR11035	PTPLA DOMAIN PROTEIN	coord: 53..117 score: 3.3
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PFAM	PF04387	PTPLA	coord: 50..104 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G008720	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G008720	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G008720	Bottle gourd (USVL1VR-Ls)	cmalsiB692
CmaCh04G008720	Cucumber (Gy14) v2	cgybcmaB416
CmaCh04G008720	Melon (DHL92) v3.6.1	cmamedB778
CmaCh04G008720	Silver-seed gourd	carcmaB0015
CmaCh04G008720	Silver-seed gourd	carcmaB1414
CmaCh04G008720	Cucumber (Chinese Long) v3	cmacucB0837
CmaCh04G008720	Watermelon (97103) v2	cmawmbB718
CmaCh04G008720	Wax gourd	cmawgoB0815
CmaCh04G008720	Cucurbita maxima (Rimu)	cmacmaB350
CmaCh04G008720	Cucumber (Gy14) v1	cgycmaB0721
CmaCh04G008720	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G008720	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G008720	Wild cucumber (PI 183967)	cmacpiB710
CmaCh04G008720	Cucumber (Chinese Long) v2	cmacuB702
CmaCh04G008720	Melon (DHL92) v3.5.1	cmameB689
CmaCh04G008720	Watermelon (Charleston Gray)	cmawcgB614
CmaCh04G008720	Watermelon (97103) v1	cmawmB660