CmaCh04G008700 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G008700
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionVery-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2
LocationCma_Chr04 : 4470494 .. 4473790 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGTTTCTGGTTTATGAGCTGATTATCATGATACAGCCTCTCCATGGCCTCCTTGGCAAGCTATATTTGATCCGCTTACAAATTTTGGTGTCGAAGATTTTCTTTCTTGCCCTGATTTTATCTTAGAAACGAAGCTGAATCTAGGTTTTGGTTTTTGCCTAATTAGGGCTTGTGAGATCCCCTGTAACAGCAACCTTACCACAGATGGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGGTTCAAACCCTTCTTTTTCATTCAATTAGCCATAAATTAGTGTTTATGTTTGTAATTTTAATTCATAAAACTGATTACTTCTTGGGTCTGGCAAGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCGCAGAGGCAAGTTCTTTTTTTGACTGGAAACCTTAATTACAAACTTAATTTACTATAAGAGATGATCCAAGATTCTTTTTACAATGAATCTATGCCTATCGGCTTTATGTGTAACTCCAATGCTTGATGATTCACTCTTACGAATTCAATCCCAAACCGATCTTGGGCATGCTGTGTAGTTCCATTAGGAAGTTTGTCATCATTTCAAATTGCAGCAAATGATCGTAATGAGTTGCTTCCAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGTTCGAGTGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTCTGTTTTTCTATTTGCTCCTTTTGGTAATACAAAAACTGTGTCCGGCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTACAAAAAAAAGAAGGTTAATGTTATTCTCCCATTCAGTTCGTCTTAATTCAGTGTACTTTACGAATATTTATCCCTAATTTTCATTTATTGTGTTGTTCTATTTATGGTTTTCTCTTTCTTATTGATATTCATTTAGGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGGTGAAGAAGACGTAGAGGTTGATCTGATTGAAGGCATCAATCAACGAGAAATTCAACTAACTCTATCTCCCCATGCTTCTCCCCACGAATTTTTAATGATCCAATATTTTTTTTCCGTGGTTATCTTTTCCATAACCAACGATCAGAATAGCATGCCAAAGAAGAGCGTTGATGTCTCCATTTAACAGTTCAGTACCATAATATATTTCCTACAACAAAAAAAGAATGTTAAATTAACTAAAATATATAATATTTTATTTATTAAAAAAAATTAGGTTACTTACATTTCTCATACATTTTAACTCGTCAGTCACTCTTATACCACCAGTTATGGGTTGATCCTCTATTTTTGAAGATAGGTTTTCAATATTTACCTTCTCATATTCTTTAATCTTGATCAATTGCTACCATTAATAAAATACATCATCAGTTACACCATATGAAAAAATAAATGAAAAAAAATATTAAATTAATGAGTTTTAAAAGAAATCTTACTGGGGTGATTTTTTTGCAATTTCGTCTCTGAGCATTAAATTTGTAATCTTTTTTCTTAGCAATTCCTTGGTTAGATATGATCCACTCAAAAGCTTTTCTTGGTGATGAGGTATAACATTGTTTTGGAGCTATATTTTTTGGATTAAGATTAAGACAATCTATAAGATGTTGGGGTGAAGCTTGGAGGATATTTTTGTATTCACCCTTGTAAACAATATTGTAGAGTGATTCAATAGCGCGAGCAGCTACTATAGCCCAACAACAGTCTAAAAGAAAAAAAAATTAATTATAAATCCTAATGTAAATATAAAAATAAATGGGTAATAAAAGAATAAAATACAAAATAAATCTTAATATAAATATGAAAATATATACGTAATAAAAGAATAACTAATACTTACTACATTCTCCTTGATCTCGAACTGGAGTGAGAACGTTATGGTAACGCCAATCAAAATATTCTTCCTGCCATTTTAAATATAGATGAAGTAAAATTGTAGTTAAATGTACTCATTTTCATAAATTCATTAATTTGATAATGAGTATGTTTTAATCTGTAACTCATCCATAATAGATTCTGCAGAATTTAAAAAAAATGGTTAGACTACAATTATTTAAAAAATAATATATTAACAATTAATCTCAACAATAATATAGTTTAGCCGATTGTTCTAATGATATGATCAAATAAAAAAATAATGAAAGTTCATGTCTCATAATAGAAAAGAAAAAATCTATCTTATTTTGTTCTACCTTCATCTAAGTCAACTGCCAAAAATATATAAATGAGTCATATATATGGACTAAAATATTTACAAATATGATTTTGGATCCAACTTCAGTCTCTAACGGAATAAATAATAACAGAATTTAAGTTCTATTCCCATTTAATGTCCACTTTTATTTTTAGAATTTGATTTTTAGGCTCAACTATAATAACAAGAAAAGAAAATAAAAAATTAAAAGGAAAGAAAAAACAGAGCTCATGCAAGAACAAGGAGCAAGAAAAGAGAAGAGAAGAAAAAATGAAAAGAAAAAACAGAGAAAAGGAATGGCGTACCTTGAGCTTATGCAAGAACAAGAAGAGACCTGTGGCAAAGAGAGGAAAAAAAAAAAGAATGAGTGACGAGATGAAACGAAGAGGGAAGGAAATCCGTCACTGTTTTTCTATCTTTTTCTATCATTTCCCTCTTTTTCTTCCCGATGGTCGGAGCCACCCTCTCCTACAGCCCCCGCCTCGTTATTAGATGCAATGCTCATCTGCCAATTTTTTTCTCCTACCGCTAACTGAAGTAAAATGGAGAATAACAGAAAAGAGGAAGGAGGAGGAAGAAGTATGAATTAAAATGAGCAAAAAGGAAGAAGACTAACCTGATCGGAAGCAATTTGGAAAAGGAAAGATAAGTGATGGTGTGAGAGGCAAGGGATATAATATGGGGAAGAGGAGATAGCAAGTCACTATTACGGTTACAACCGACTGGCAGA

mRNA sequence

ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGCAATTCCTTGGTTAGATATGATCCACTCAAAAGCTTTTCTTGA

Coding sequence (CDS)

ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGCAATTCCTTGGTTAGATATGATCCACTCAAAAGCTTTTCTTGA

Protein sequence

MTFRIYLICQEIEGIWSTTGYNAVERPLQFAQTAAVLEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRNVFHILFNHLILFYVMKEDGAVEEVAAQITHKIRVGGILDKVEKPPNQRDQFRGNSLVRYDPLKSFS
BLAST of CmaCh04G008700 vs. Swiss-Prot
Match: HACDA_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-10
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR 84
           ++ S KY   MPN+WNFSFD+ Y ++L LA YVPGSPHM+  ML QR
Sbjct: 165 MKASEKYCLRMPNKWNFSFDFFYASILSLAIYVPGSPHMFTYMLAQR 211

BLAST of CmaCh04G008700 vs. Swiss-Prot
Match: HACDB_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica GN=PAS2B PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR 84
           ++ + KY   MPN+WNFSFD+ Y ++L LA YVPGSPHM+  ML QR
Sbjct: 165 MKATEKYCLRMPNKWNFSFDFSYASILSLAVYVPGSPHMFTYMLAQR 211

BLAST of CmaCh04G008700 vs. Swiss-Prot
Match: HACD_ARATH (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-09
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR 84
           ++ S  YS  MPN  NFSFD+ Y  +L+LA YVPGSPHMYR ML QR
Sbjct: 165 IKTSEMYSVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQR 211

BLAST of CmaCh04G008700 vs. TrEMBL
Match: A0A0A0L3F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G114430 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN 85
           ++ESGKYS+ MPN+WNFSFDY Y A+L+LA Y PGSPHMY  MLVQR+
Sbjct: 165 MKESGKYSYRMPNKWNFSFDYFYAAILVLAIYAPGSPHMYSYMLVQRS 212

BLAST of CmaCh04G008700 vs. TrEMBL
Match: D7U6A1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0313g00040 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR 84
           ++ES KY   MPN+WNFSFDY Y A+L++AFYVPGSPHMY+ ML QR
Sbjct: 164 IKESAKYCLRMPNKWNFSFDYFYAALLVIAFYVPGSPHMYQYMLGQR 210

BLAST of CmaCh04G008700 vs. TrEMBL
Match: A5C8R1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031565 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR 84
           ++ES KY   MPN+WNFSFDY Y A+L++AFYVPGSPHMY+ ML QR
Sbjct: 164 IKESAKYCLRMPNKWNFSFDYFYAALLVIAFYVPGSPHMYQYMLGQR 210

BLAST of CmaCh04G008700 vs. TrEMBL
Match: A0A0A9KEX7_ARUDO (PAS2 OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.1e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR 84
           ++ S KY   +PNEWNFSFDYLYG++L +A Y+PGSPHM+R MLVQR
Sbjct: 165 MKASEKYCLRLPNEWNFSFDYLYGSLLAIAIYIPGSPHMFRYMLVQR 211

BLAST of CmaCh04G008700 vs. TrEMBL
Match: A0A0A9JDF9_ARUDO (PAS2 OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 37 LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR 84
          ++ES KY   +PN+WNFSFDYLYG++L +A YVPGSPHM+R ML QR
Sbjct: 42 MKESEKYCLRLPNKWNFSFDYLYGSLLAIAIYVPGSPHMFRYMLAQR 88

BLAST of CmaCh04G008700 vs. TAIR10
Match: AT5G10480.3 (AT5G10480.3 Protein-tyrosine phosphatase-like, PTPLA)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-10
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR 84
           ++ S  YS  MPN  NFSFD+ Y  +L+LA YVPGSPHMYR ML QR
Sbjct: 174 IKTSEMYSVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQR 220

BLAST of CmaCh04G008700 vs. NCBI nr
Match: gi|449431918|ref|XP_004133747.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN 85
           ++ESGKYS+ MPN+WNFSFDY Y A+L+LA Y PGSPHMY  MLVQR+
Sbjct: 165 MKESGKYSYRMPNKWNFSFDYFYAAILVLAIYAPGSPHMYSYMLVQRS 212

BLAST of CmaCh04G008700 vs. NCBI nr
Match: gi|659102526|ref|XP_008452179.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRN 85
           ++ESGKYS+ MPN+WNFSFDY Y A+L+LA Y PGSPHMY  MLVQR+
Sbjct: 165 MKESGKYSYRMPNKWNFSFDYFYAAILVLAIYAPGSPHMYSYMLVQRS 212

BLAST of CmaCh04G008700 vs. NCBI nr
Match: gi|147833954|emb|CAN64341.1| (hypothetical protein VITISV_031565 [Vitis vinifera])

HSP 1 Score: 76.6 bits (187), Expect = 4.0e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR 84
           ++ES KY   MPN+WNFSFDY Y A+L++AFYVPGSPHMY+ ML QR
Sbjct: 164 IKESAKYCLRMPNKWNFSFDYFYAALLVIAFYVPGSPHMYQYMLGQR 210

BLAST of CmaCh04G008700 vs. NCBI nr
Match: gi|225467969|ref|XP_002269096.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Vitis vinifera])

HSP 1 Score: 76.6 bits (187), Expect = 4.0e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR 84
           ++ES KY   MPN+WNFSFDY Y A+L++AFYVPGSPHMY+ ML QR
Sbjct: 164 IKESAKYCLRMPNKWNFSFDYFYAALLVIAFYVPGSPHMYQYMLGQR 210

BLAST of CmaCh04G008700 vs. NCBI nr
Match: gi|747082230|ref|XP_011088426.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Sesamum indicum])

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-11
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1

Query: 37  LEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQR 84
           + ESGKYS  MPN+WNF+FDY Y A++IL FYVPGSPHMY  ML QR
Sbjct: 165 MRESGKYSIRMPNKWNFAFDYYYNALVILGFYVPGSPHMYGYMLGQR 211

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
HACDA_ORYSJ4.4e-1059.57Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa... [more]
HACDB_ORYSJ2.2e-0957.45Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa... [more]
HACD_ARATH3.8e-0961.70Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis t... [more]
Match NameE-valueIdentityDescription
A0A0A0L3F8_CUCSA1.1e-1270.83Uncharacterized protein OS=Cucumis sativus GN=Csa_3G114430 PE=4 SV=1[more]
D7U6A1_VITVI2.8e-1168.09Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0313g00040 PE=4 SV=... [more]
A5C8R1_VITVI2.8e-1168.09Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031565 PE=4 SV=1[more]
A0A0A9KEX7_ARUDO8.1e-1165.96PAS2 OS=Arundo donax PE=4 SV=1[more]
A0A0A9JDF9_ARUDO1.1e-1065.96PAS2 OS=Arundo donax PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G10480.32.1e-1061.70 Protein-tyrosine phosphatase-like, PTPLA[more]
Match NameE-valueIdentityDescription
gi|449431918|ref|XP_004133747.1|1.6e-1270.83PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cuc... [more]
gi|659102526|ref|XP_008452179.1|1.6e-1270.83PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein][more]
gi|147833954|emb|CAN64341.1|4.0e-1168.09hypothetical protein VITISV_031565 [Vitis vinifera][more]
gi|225467969|ref|XP_002269096.1|4.0e-1168.09PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Viti... [more]
gi|747082230|ref|XP_011088426.1|5.2e-1170.21PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Sesa... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007482Tyr_Pase-like_PTPLA
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G008700.1CmaCh04G008700.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007482Protein-tyrosine phosphatase-like, PTPLAPANTHERPTHR11035PTPLA DOMAIN PROTEINcoord: 38..109
score: 9.3
IPR007482Protein-tyrosine phosphatase-like, PTPLAPFAMPF04387PTPLAcoord: 32..84
score: 1.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None