CmaCh04G008700 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGTATTCCCTGATCGTTTCTGGTTTATGAGCTGATTATCATGATACAGCCTCTCCATGGCCTCCTTGGCAAGCTATATTTGATCCGCTTACAAATTTTGGTGTCGAAGATTTTCTTTCTTGCCCTGATTTTATCTTAGAAACGAAGCTGAATCTAGGTTTTGGTTTTTGCCTAATTAGGGCTTGTGAGATCCCCTGTAACAGCAACCTTACCACAGATGGGTTCTAGATTGTATTTGACTTGGGGCATCTTATGGAGTTTCCCTGAGGTTCAAACCCTTCTTTTTCATTCAATTAGCCATAAATTAGTGTTTATGTTTGTAATTTTAATTCATAAAACTGATTACTTCTTGGGTCTGGCAAGTTAGGAATCATGTACTTGTTTCCTCCTTGGTCATCAGCTGGTCTATCGCAGAGGCAAGTTCTTTTTTTGACTGGAAACCTTAATTACAAACTTAATTTACTATAAGAGATGATCCAAGATTCTTTTTACAATGAATCTATGCCTATCGGCTTTATGTGTAACTCCAATGCTTGATGATTCACTCTTACGAATTCAATCCCAAACCGATCTTGGGCATGCTGTGTAGTTCCATTAGGAAGTTTGTCATCATTTCAAATTGCAGCAAATGATCGTAATGAGTTGCTTCCAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGTTCGAGTGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTCTGTTTTTCTATTTGCTCCTTTTGGTAATACAAAAACTGTGTCCGGCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTACAAAAAAAAGAAGGTTAATGTTATTCTCCCATTCAGTTCGTCTTAATTCAGTGTACTTTACGAATATTTATCCCTAATTTTCATTTATTGTGTTGTTCTATTTATGGTTTTCTCTTTCTTATTGATATTCATTTAGGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGGTGAAGAAGACGTAGAGGTTGATCTGATTGAAGGCATCAATCAACGAGAAATTCAACTAACTCTATCTCCCCATGCTTCTCCCCACGAATTTTTAATGATCCAATATTTTTTTTCCGTGGTTATCTTTTCCATAACCAACGATCAGAATAGCATGCCAAAGAAGAGCGTTGATGTCTCCATTTAACAGTTCAGTACCATAATATATTTCCTACAACAAAAAAAGAATGTTAAATTAACTAAAATATATAATATTTTATTTATTAAAAAAAATTAGGTTACTTACATTTCTCATACATTTTAACTCGTCAGTCACTCTTATACCACCAGTTATGGGTTGATCCTCTATTTTTGAAGATAGGTTTTCAATATTTACCTTCTCATATTCTTTAATCTTGATCAATTGCTACCATTAATAAAATACATCATCAGTTACACCATATGAAAAAATAAATGAAAAAAAATATTAAATTAATGAGTTTTAAAAGAAATCTTACTGGGGTGATTTTTTTGCAATTTCGTCTCTGAGCATTAAATTTGTAATCTTTTTTCTTAGCAATTCCTTGGTTAGATATGATCCACTCAAAAGCTTTTCTTGGTGATGAGGTATAACATTGTTTTGGAGCTATATTTTTTGGATTAAGATTAAGACAATCTATAAGATGTTGGGGTGAAGCTTGGAGGATATTTTTGTATTCACCCTTGTAAACAATATTGTAGAGTGATTCAATAGCGCGAGCAGCTACTATAGCCCAACAACAGTCTAAAAGAAAAAAAAATTAATTATAAATCCTAATGTAAATATAAAAATAAATGGGTAATAAAAGAATAAAATACAAAATAAATCTTAATATAAATATGAAAATATATACGTAATAAAAGAATAACTAATACTTACTACATTCTCCTTGATCTCGAACTGGAGTGAGAACGTTATGGTAACGCCAATCAAAATATTCTTCCTGCCATTTTAAATATAGATGAAGTAAAATTGTAGTTAAATGTACTCATTTTCATAAATTCATTAATTTGATAATGAGTATGTTTTAATCTGTAACTCATCCATAATAGATTCTGCAGAATTTAAAAAAAATGGTTAGACTACAATTATTTAAAAAATAATATATTAACAATTAATCTCAACAATAATATAGTTTAGCCGATTGTTCTAATGATATGATCAAATAAAAAAATAATGAAAGTTCATGTCTCATAATAGAAAAGAAAAAATCTATCTTATTTTGTTCTACCTTCATCTAAGTCAACTGCCAAAAATATATAAATGAGTCATATATATGGACTAAAATATTTACAAATATGATTTTGGATCCAACTTCAGTCTCTAACGGAATAAATAATAACAGAATTTAAGTTCTATTCCCATTTAATGTCCACTTTTATTTTTAGAATTTGATTTTTAGGCTCAACTATAATAACAAGAAAAGAAAATAAAAAATTAAAAGGAAAGAAAAAACAGAGCTCATGCAAGAACAAGGAGCAAGAAAAGAGAAGAGAAGAAAAAATGAAAAGAAAAAACAGAGAAAAGGAATGGCGTACCTTGAGCTTATGCAAGAACAAGAAGAGACCTGTGGCAAAGAGAGGAAAAAAAAAAAGAATGAGTGACGAGATGAAACGAAGAGGGAAGGAAATCCGTCACTGTTTTTCTATCTTTTTCTATCATTTCCCTCTTTTTCTTCCCGATGGTCGGAGCCACCCTCTCCTACAGCCCCCGCCTCGTTATTAGATGCAATGCTCATCTGCCAATTTTTTTCTCCTACCGCTAACTGAAGTAAAATGGAGAATAACAGAAAAGAGGAAGGAGGAGGAAGAAGTATGAATTAAAATGAGCAAAAAGGAAGAAGACTAACCTGATCGGAAGCAATTTGGAAAAGGAAAGATAAGTGATGGTGTGAGAGGCAAGGGATATAATATGGGGAAGAGGAGATAGCAAGTCACTATTACGGTTACAACCGACTGGCAGA ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGCAATTCCTTGGTTAGATATGATCCACTCAAAAGCTTTTCTTGA ATGACATTCCGCATATATTTGATCTGTCAAGAAATTGAAGGAATCTGGTCAACAACAGGATATAATGCCGTGGAACGTCCTCTTCAGTTTGCTCAAACTGCAGCTGTTTTAGAGGAATCTGGGAAGTATTCTTTTAGCATGCCAAACGAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCATTCTACGTGCCAGGAAGTCCACATATGTACCGCTGCATGCTTGTTCAGAGGAATGTTTTCCACATTTTATTTAATCATCTTATATTATTTTATGTTATGAAAGAAGATGGAGCTGTTGAAGAAGTGGCAGCCCAGATTACCCACAAAATAAGAGTTGGTGGAATACTTGATAAGGTGGAAAAGCCTCCTAACCAAAGAGATCAGTTTAGAGGCAATTCCTTGGTTAGATATGATCCACTCAAAAGCTTTTCTTGA MTFRIYLICQEIEGIWSTTGYNAVERPLQFAQTAAVLEESGKYSFSMPNEWNFSFDYLYGAMLILAFYVPGSPHMYRCMLVQRNVFHILFNHLILFYVMKEDGAVEEVAAQITHKIRVGGILDKVEKPPNQRDQFRGNSLVRYDPLKSFS
BLAST of CmaCh04G008700 vs. Swiss-Prot
Match: HACDA_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2) HSP 1 Score: 65.9 bits (159), Expect = 4.4e-10 Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
BLAST of CmaCh04G008700 vs. Swiss-Prot
Match: HACDB_ORYSJ (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica GN=PAS2B PE=2 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09 Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1
BLAST of CmaCh04G008700 vs. Swiss-Prot
Match: HACD_ARATH (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 3.8e-09 Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1
BLAST of CmaCh04G008700 vs. TrEMBL
Match: A0A0A0L3F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G114430 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12 Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1
BLAST of CmaCh04G008700 vs. TrEMBL
Match: D7U6A1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0313g00040 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11 Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1
BLAST of CmaCh04G008700 vs. TrEMBL
Match: A5C8R1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031565 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11 Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1
BLAST of CmaCh04G008700 vs. TrEMBL
Match: A0A0A9KEX7_ARUDO (PAS2 OS=Arundo donax PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 8.1e-11 Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1
BLAST of CmaCh04G008700 vs. TrEMBL
Match: A0A0A9JDF9_ARUDO (PAS2 OS=Arundo donax PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10 Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1
BLAST of CmaCh04G008700 vs. TAIR10
Match: AT5G10480.3 (AT5G10480.3 Protein-tyrosine phosphatase-like, PTPLA) HSP 1 Score: 62.8 bits (151), Expect = 2.1e-10 Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1
BLAST of CmaCh04G008700 vs. NCBI nr
Match: gi|449431918|ref|XP_004133747.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A [Cucumis sativus]) HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12 Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1
BLAST of CmaCh04G008700 vs. NCBI nr
Match: gi|659102526|ref|XP_008452179.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein]) HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12 Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1
BLAST of CmaCh04G008700 vs. NCBI nr
Match: gi|147833954|emb|CAN64341.1| (hypothetical protein VITISV_031565 [Vitis vinifera]) HSP 1 Score: 76.6 bits (187), Expect = 4.0e-11 Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1
BLAST of CmaCh04G008700 vs. NCBI nr
Match: gi|225467969|ref|XP_002269096.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Vitis vinifera]) HSP 1 Score: 76.6 bits (187), Expect = 4.0e-11 Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1
BLAST of CmaCh04G008700 vs. NCBI nr
Match: gi|747082230|ref|XP_011088426.1| (PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Sesamum indicum]) HSP 1 Score: 76.3 bits (186), Expect = 5.2e-11 Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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