CmaCh04G008390 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G008390
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 4311582 .. 4312124 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGGGTTTTCAATTTCTGATGGTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGCCGCTGCTCCCGCTCAACCGCCCACCACCCCCGCTGTTCCGCCCCCGTCCACTCCTCCTCCAGCTGCCTCCCCACCTCCCGCCACTCCTCCTCCAGCTGCCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCTCCAGCCACCCCTCCTCCTGCAACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCAAGCCAACCACCAGCCACACCTCCTACATCTCCGGCACCGACCTCCTCTCCGACTCCGCCACCAAAGGAGGGTCCAGCCTCATCTCCGTCTCCATCCACCGCCTCTCCACCCTCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCGCCACCCCCAGAAGATAATGGTGCAGTCTCCATCAGCCGGGTCGCGATGGTTGGCAGTGCTGTGAGCGGCGTTTTGTTGGCAATGGTGTTCGCTTAG

mRNA sequence

ATGAAGATGGGTTTTCAATTTCTGATGGTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGCCGCTGCTCCCGCTCAACCGCCCACCACCCCCGCTGTTCCGCCCCCGTCCACTCCTCCTCCAGCTGCCTCCCCACCTCCCGCCACTCCTCCTCCAGCTGCCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCTCCAGCCACCCCTCCTCCTGCAACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCAAGCCAACCACCAGCCACACCTCCTACATCTCCGGCACCGACCTCCTCTCCGACTCCGCCACCAAAGGAGGGTCCAGCCTCATCTCCGTCTCCATCCACCGCCTCTCCACCCTCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCGCCACCCCCAGAAGATAATGGTGCAGTCTCCATCAGCCGGGTCGCGATGGTTGGCAGTGCTGTGAGCGGCGTTTTGTTGGCAATGGTGTTCGCTTAG

Coding sequence (CDS)

ATGAAGATGGGTTTTCAATTTCTGATGGTTTTGGCCTGCTTGGCTACTTCTTCTATGGCTCAGGCTCCTGCCGCTGCTCCCGCTCAACCGCCCACCACCCCCGCTGTTCCGCCCCCGTCCACTCCTCCTCCAGCTGCCTCCCCACCTCCCGCCACTCCTCCTCCAGCTGCCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCTCCAGCCACCCCTCCTCCTGCAACCCCACCTCCCGCCACCCCTCCTTCAGCAACCCCACCATCATCCCCACCAAGCCAACCACCAGCCACACCTCCTACATCTCCGGCACCGACCTCCTCTCCGACTCCGCCACCAAAGGAGGGTCCAGCCTCATCTCCGTCTCCATCCACCGCCTCTCCACCCTCACCACCAACGGAAGGAAACGTCCCCTCCGGCGCGCCTGGACCCAACGCTCCGCCACCCCCAGAAGATAATGGTGCAGTCTCCATCAGCCGGGTCGCGATGGTTGGCAGTGCTGTGAGCGGCGTTTTGTTGGCAATGGTGTTCGCTTAG

Protein sequence

MKMGFQFLMVLACLATSSMAQAPAAAPAQPPTTPAVPPPSTPPPAASPPPATPPPAATXXXXXXXXXXPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTPPPKEGPASSPSPSTASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVSGVLLAMVFA
Homology
[Close]
BLAST of CmaCh04G008390 vs. TrEMBL
Match: A0A0A0L0L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.8e-39
Identity = 130/184 (70.65%), Postives = 142/184 (77.17%), Query Frame = 1 

Query: 1   MKMGFQFLMVLACLATSSMAQAPAAAPAQPPTTPAVPPPSTPPPAASPPPATPPPAATXX 60
           MKMGFQF+M LA  ATS MAQAP AAPAQPP+TPAVPPPSTPPPAASPPPATPPPA    
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT--- 60

Query: 61  XXXXXXXXPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSP---APTSSPTPPPKE 120
                   PPPATPPPATPPPA    +TPPSSPPSQPPA+PPTSP   +P+S PT PPKE
Sbjct: 61  --------PPPATPPPATPPPA----STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKE 120

Query: 121 GPASSPSPSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGSAVSGVLLA 180
           GP    SP T+SPPSPP EGNVP+ +PGP+  PPPPE NGA S+SR  MVG AV+G  LA
Sbjct: 121 GPI---SPPTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLA 166

[Close]
BLAST of CmaCh04G008390 vs. TrEMBL
Match: A0A0R0KYA8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G039700 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.8e-11
Identity = 87/175 (49.71%), Postives = 106/175 (60.57%), Query Frame = 1 

Query: 6   QFLMVLACLATSSMAQAPAAAPAQPPTTPAVPPPSTPPPAASPPPATPPPAATXXXXXXX 65
           Q L++L  LA+S +AQAP AAP QPPTT     PS PPP ++P PA  PPA         
Sbjct: 7   QLLLILGLLASSCLAQAPGAAPTQPPTTT----PSPPPPRSAPAPAPTPPA--------- 66

Query: 66  XXXPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTPPPKEGPASSPSP 125
                  TPPPATPPPA   +ATPP  P + PPAT PT P PT++PT  P   PA+SP P
Sbjct: 67  -------TPPPATPPPA---AATPP--PATSPPATTPT-PTPTAAPT--PASSPATSPVP 126

Query: 126 STASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVSGVLLAMVFA 181
           S +SPP+P T G  P  A G   PPPP  + A S S+  + GSA+SG+ +AMV A
Sbjct: 127 SASSPPAPGTAGPAPGPAGGAEPPPPP--SAAFSASKAFIAGSALSGIFVAMVLA 151

[Close]
BLAST of CmaCh04G008390 vs. NCBI nr
Match: gi|700198508|gb|KGN53666.1| (hypothetical protein Csa_4G098710 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 5.5e-39
Identity = 130/184 (70.65%), Postives = 142/184 (77.17%), Query Frame = 1 

Query: 1   MKMGFQFLMVLACLATSSMAQAPAAAPAQPPTTPAVPPPSTPPPAASPPPATPPPAATXX 60
           MKMGFQF+M LA  ATS MAQAP AAPAQPP+TPAVPPPSTPPPAASPPPATPPPA    
Sbjct: 1   MKMGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT--- 60

Query: 61  XXXXXXXXPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSP---APTSSPTPPPKE 120
                   PPPATPPPATPPPA    +TPPSSPPSQPPA+PPTSP   +P+S PT PPKE
Sbjct: 61  --------PPPATPPPATPPPA----STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKE 120

Query: 121 GPASSPSPSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGSAVSGVLLA 180
           GP    SP T+SPPSPP EGNVP+ +PGP+  PPPPE NGA S+SR  MVG AV+G  LA
Sbjct: 121 GPI---SPPTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLA 166

[Close]
BLAST of CmaCh04G008390 vs. NCBI nr
Match: gi|778697564|ref|XP_011654350.1| (PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 6.0e-38
Identity = 128/182 (70.33%), Postives = 140/182 (76.92%), Query Frame = 1 

Query: 3   MGFQFLMVLACLATSSMAQAPAAAPAQPPTTPAVPPPSTPPPAASPPPATPPPAATXXXX 62
           MGFQF+M LA  ATS MAQAP AAPAQPP+TPAVPPPSTPPPAASPPPATPPPA      
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT----- 60

Query: 63  XXXXXXPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSP---APTSSPTPPPKEGP 122
                 PPPATPPPATPPPA    +TPPSSPPSQPPA+PPTSP   +P+S PT PPKEGP
Sbjct: 61  ------PPPATPPPATPPPA----STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGP 120

Query: 123 ASSPSPSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGSAVSGVLLAMV 181
               SP T+SPPSPP EGNVP+ +PGP+  PPPPE NGA S+SR  MVG AV+G  LAMV
Sbjct: 121 I---SPPTSSPPSPPPEGNVPTNSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMV 164

[Close]
BLAST of CmaCh04G008390 vs. NCBI nr
Match: gi|659111292|ref|XP_008455676.1| (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 7.9e-38
Identity = 127/182 (69.78%), Postives = 140/182 (76.92%), Query Frame = 1 

Query: 3   MGFQFLMVLACLATSSMAQAPAAAPAQPPTTPAVPPPSTPPPAASPPPATPPPAATXXXX 62
           MGFQF+M LA  ATS MAQAP AAPAQPP+TPAVPPPSTPPPAASPPPATPPPA      
Sbjct: 1   MGFQFVMFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPAT----- 60

Query: 63  XXXXXXPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSP---APTSSPTPPPKEGP 122
                 PPPATPPPATPPPA    +TPPSSPPSQPPA+PPTSP   +P+S PT PPKEGP
Sbjct: 61  ------PPPATPPPATPPPA----STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGP 120

Query: 123 ASSPSPSTASPPSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGSAVSGVLLAMV 181
               SP T+SPPSPP EGNVP+ +PGP+  PPPPE NGA S+SR  MVG AV+G  LAM+
Sbjct: 121 I---SPPTSSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMI 164

[Close]
BLAST of CmaCh04G008390 vs. NCBI nr
Match: gi|947121437|gb|KRH69643.1| (hypothetical protein GLYMA_02G039700 [Glycine max])

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 87/175 (49.71%), Postives = 106/175 (60.57%), Query Frame = 1 

Query: 6   QFLMVLACLATSSMAQAPAAAPAQPPTTPAVPPPSTPPPAASPPPATPPPAATXXXXXXX 65
           Q L++L  LA+S +AQAP AAP QPPTT     PS PPP ++P PA  PPA         
Sbjct: 7   QLLLILGLLASSCLAQAPGAAPTQPPTTT----PSPPPPRSAPAPAPTPPA--------- 66

Query: 66  XXXPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTPPPKEGPASSPSP 125
                  TPPPATPPPA   +ATPP  P + PPAT PT P PT++PT  P   PA+SP P
Sbjct: 67  -------TPPPATPPPA---AATPP--PATSPPATTPT-PTPTAAPT--PASSPATSPVP 126

Query: 126 STASPPSPPTEGNVPSGAPGPNAPPPPEDNGAVSISRVAMVGSAVSGVLLAMVFA 181
           S +SPP+P T G  P  A G   PPPP  + A S S+  + GSA+SG+ +AMV A
Sbjct: 127 SASSPPAPGTAGPAPGPAGGAEPPPPP--SAAFSASKAFIAGSALSGIFVAMVLA 151

[Close]
BLAST of CmaCh04G008390 vs. NCBI nr
Match: gi|659110043|ref|XP_008455018.1| (PREDICTED: classical arabinogalactan protein 9 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 8.0e-06
Identity = 75/152 (49.34%), Postives = 92/152 (60.53%), Query Frame = 1 

Query: 5   FQFLMVLACLATSSMAQAPAAAPAQPPTTPAVPPPSTPPPAASPPPA-TPPPAATXXXXX 64
           F F+ +   +A +    +P  A   PPTT A PP STPPP +SPPPA TPPPAAT     
Sbjct: 11  FTFISIAFAIAGAQSPSSPPTATPSPPTTSAPPPASTPPPVSSPPPAATPPPAATPPPAS 70

Query: 65  XXXXXPPPATPPPATPPPATPPSATPPSSPPSQPPATPPTSPAPTSSPTPPPKEGPASSP 124
                PPPA+PPPATPPPA+PP A+PP  P S PPA+PP +  P +SP PP    PA   
Sbjct: 71  PPPASPPPASPPPATPPPASPPPASPP--PASPPPASPPPASPPPASP-PPAIPPPAPLA 130

Query: 125 SPSTASPPSPPTEGNVPSGAPGP---NAPPPP 153
           SP TA P   P++  V + APGP   ++PP P
Sbjct: 131 SPPTAVPAPAPSKKKVKAAAPGPAPVSSPPAP 159

The following BLAST results are available for this feature:
BLAST of CmaCh04G008390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G008390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0L1_CUCSA3.8e-3970.65Uncharacterized protein OS=Cucumis sativus GN=Csa_4G098710 PE=4 SV=1[more]
A0A0R0KYA8_SOYBN9.8e-1149.71Uncharacterized protein OS=Glycine max GN=GLYMA_02G039700 PE=4 SV=1[more]
BLAST of CmaCh04G008390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G008390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198508|gb|KGN53666.1|5.5e-3970.65hypothetical protein Csa_4G098710 [Cucumis sativus][more]
gi|778697564|ref|XP_011654350.1|6.0e-3870.33PREDICTED: classical arabinogalactan protein 9 [Cucumis sativus][more]
gi|659111292|ref|XP_008455676.1|7.9e-3869.78PREDICTED: vegetative cell wall protein gp1 [Cucumis melo][more]
gi|947121437|gb|KRH69643.1|1.4e-1049.71hypothetical protein GLYMA_02G039700 [Glycine max][more]
gi|659110043|ref|XP_008455018.1|8.0e-0649.34PREDICTED: classical arabinogalactan protein 9 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G008390.1CmaCh04G008390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 39..60
score: 3.3E-10coord: 63..79
score: 3.3E-10coord: 27..39
score: 3.3E-10coord: 81..98
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G008390Cucumber (Chinese Long) v3cmacucB0917
CmaCh04G008390Cucumber (Chinese Long) v3cmacucB0845
CmaCh04G008390Watermelon (97103) v2cmawmbB712
CmaCh04G008390Watermelon (97103) v2cmawmbB718
CmaCh04G008390Wax gourdcmawgoB0815
CmaCh04G008390Wax gourdcmawgoB0822
CmaCh04G008390Wax gourdcmawgoB0883
CmaCh04G008390Cucurbita maxima (Rimu)cmacmaB350
CmaCh04G008390Cucurbita maxima (Rimu)cmacmaB546
CmaCh04G008390Cucurbita moschata (Rifu)cmacmoB700
CmaCh04G008390Cucurbita moschata (Rifu)cmacmoB727
CmaCh04G008390Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G008390Wild cucumber (PI 183967)cmacpiB717
CmaCh04G008390Wild cucumber (PI 183967)cmacpiB785
CmaCh04G008390Cucumber (Chinese Long) v2cmacuB711
CmaCh04G008390Melon (DHL92) v3.5.1cmameB698
CmaCh04G008390Melon (DHL92) v3.5.1cmameB710
CmaCh04G008390Watermelon (Charleston Gray)cmawcgB614
CmaCh04G008390Watermelon (Charleston Gray)cmawcgB639
CmaCh04G008390Watermelon (97103) v1cmawmB715
CmaCh04G008390Cucurbita pepo (Zucchini)cmacpeB714
CmaCh04G008390Cucurbita pepo (Zucchini)cmacpeB702
CmaCh04G008390Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G008390Cucurbita pepo (Zucchini)cmacpeB741
CmaCh04G008390Bottle gourd (USVL1VR-Ls)cmalsiB639
CmaCh04G008390Bottle gourd (USVL1VR-Ls)cmalsiB692
CmaCh04G008390Cucumber (Gy14) v2cgybcmaB544
CmaCh04G008390Melon (DHL92) v3.6.1cmamedB788
CmaCh04G008390Melon (DHL92) v3.6.1cmamedB804
CmaCh04G008390Silver-seed gourdcarcmaB1288
CmaCh04G008390Silver-seed gourdcarcmaB1414