CmaCh04G007820 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G007820
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
LocationCma_Chr04 : 3991722 .. 3992225 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCTAATAGGCTTGGTGCAAATTCGCTTTTGGACATTGTTGTCTTTGGACGAGCTTGTGCAAATAGGGTGGCAGAGATCAGTAGTCCAGGCAAGATGCTTAATTTTTAACTCGAAAAAGGAAGGATGAACCCACAACCCAATCCAACCAATAATTATAAGAAAGAAAAATTCAGTTACGTCAAAAAATTCTCTCTGGGCAGTTTGCAGGCGCAAGGCAAAATCCGTTGGAAAAAGATGCTGGTGAGAAGACAATTGCATGGCTAGACAAACTAAGGAACTCAAATGGTTCACTGCCCACCTCAAAGATTCGGTTAAACATGCAACGAATTATGCAAAACAATGCCTGCTGTTTTCCGAACACAGGAGACCTTGGAAGAAGGTATTAGCCAAACTGAAAAGAGACTTAGATTAAAACTTCTAGACTATCTGCAACTCTGCCTCAATTTTTTTTTTCACCTCTTTTATTGTCTTCTGCTTCTTTAGGGTGCAAATTAATTGA

mRNA sequence

ATGGTGCTAATAGGCTTGGTGCAAATTCGCTTTTGGACATTGTTGTCTTTGGACGAGCTTGTGCAAATAGGGTGGCAGAGATCAGTAGTCCAGTTTGCAGGCGCAAGGCAAAATCCGTTGGAAAAAGATGCTGGTGAGAAGACAATTGCATGGCTAGACAAACTAAGGAACTCAAATGGTTCACTGCCCACCTCAAAGATTCGGTTAAACATGCAACGAATTATGCAAAACAATGCCTGCTGTTTTCCGAACACAGGAGACCTTGGAAGAAGGGTGCAAATTAATTGA

Coding sequence (CDS)

ATGGTGCTAATAGGCTTGGTGCAAATTCGCTTTTGGACATTGTTGTCTTTGGACGAGCTTGTGCAAATAGGGTGGCAGAGATCAGTAGTCCAGTTTGCAGGCGCAAGGCAAAATCCGTTGGAAAAAGATGCTGGTGAGAAGACAATTGCATGGCTAGACAAACTAAGGAACTCAAATGGTTCACTGCCCACCTCAAAGATTCGGTTAAACATGCAACGAATTATGCAAAACAATGCCTGCTGTTTTCCGAACACAGGAGACCTTGGAAGAAGGGTGCAAATTAATTGA

Protein sequence

MVLIGLVQIRFWTLLSLDELVQIGWQRSVVQFAGARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCFPNTGDLGRRVQIN
BLAST of CmaCh04G007820 vs. Swiss-Prot
Match: SDHA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-17
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 34  GARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCF 83
           G +Q PLEKDAGEKTIAWLD+LRNSNGSLPTS IRLNMQRIMQNNA  F
Sbjct: 468 GEKQKPLEKDAGEKTIAWLDRLRNSNGSLPTSTIRLNMQRIMQNNAAVF 516

BLAST of CmaCh04G007820 vs. Swiss-Prot
Match: SDHA_ORYSJ (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-16
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 34  GARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCF 83
           G +Q PL+K AGEKTIAWLDKLRN+NGSLPTSKIRLNMQR+MQNNA  F
Sbjct: 464 GEKQKPLQKSAGEKTIAWLDKLRNANGSLPTSKIRLNMQRVMQNNAAVF 512

BLAST of CmaCh04G007820 vs. Swiss-Prot
Match: SDHA2_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH1-2 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-16
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1

Query: 30  VQFAGARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCF 83
           +Q  G +  PLEKDAGEK+I WLD++RNSNGSLPTSKIRLNMQR+MQNNA  F
Sbjct: 462 IQKPGEKLKPLEKDAGEKSIEWLDRIRNSNGSLPTSKIRLNMQRVMQNNAAVF 514

BLAST of CmaCh04G007820 vs. Swiss-Prot
Match: SDHA_DANRE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio GN=sdha PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-07
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1

Query: 34  GARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCFPNTGDL 89
           G + +PL+ +AGE ++A LDK+R +NGS  TS+IRLNMQ+ MQ++A  F  TGD+
Sbjct: 475 GEKLSPLKPNAGEASVANLDKMRYANGSTRTSEIRLNMQKTMQSHAAVF-RTGDV 528

BLAST of CmaCh04G007820 vs. Swiss-Prot
Match: SDHX_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJL045W PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-06
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1

Query: 34  GARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCFPNTGDLGRRVQ 93
           G    PL  + G ++IA LDK+RN+ GSL TS+IRLNMQR MQ +   F     L   V+
Sbjct: 465 GLPHKPLASNIGHESIANLDKVRNARGSLKTSQIRLNMQRTMQKDVSVFRTQDTLDEGVR 524

BLAST of CmaCh04G007820 vs. TrEMBL
Match: A0A151SEJ0_CAJCA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Cajanus cajan GN=KK1_024853 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 1

Query: 29  VVQFAGARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCF 83
           V+ FAG +Q PLEKDAG KTI WLDKLRNSNGSLPTSKIRLNMQRIMQNNA  F
Sbjct: 459 VLHFAGEKQKPLEKDAGMKTITWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVF 512

BLAST of CmaCh04G007820 vs. TrEMBL
Match: A0A022QQF4_ERYGU (Succinate dehydrogenase (quinone) (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0028802mg PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-16
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 1

Query: 34  GARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCF 83
           G +Q PLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNA  F
Sbjct: 376 GEKQKPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVF 424

BLAST of CmaCh04G007820 vs. TrEMBL
Match: M0TDM1_MUSAM (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.3e-16
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1

Query: 34  GARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCF 83
           G +Q PLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQR+MQNNA  F
Sbjct: 433 GEKQKPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQNNAAVF 481

BLAST of CmaCh04G007820 vs. TrEMBL
Match: I1JCQ7_SOYBN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Glycine max GN=GLYMA_02G057400 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.3e-16
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 1

Query: 28  SVVQFAGARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCF 83
           S +Q  G +Q PLEKDAG KTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNA  F
Sbjct: 462 SEIQRPGEKQKPLEKDAGMKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVF 516

BLAST of CmaCh04G007820 vs. TrEMBL
Match: N1R435_AEGTA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Aegilops tauschii GN=F775_29983 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.9e-16
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1

Query: 18  DELVQIGWQRSVVQFAGARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQN 77
           + L+ + W    +   G  Q PLEKDAGEKTIAWLDKLRN+NGSLPTSKIRLNMQRIMQN
Sbjct: 428 NRLILVPWY--TIFIIGGTQKPLEKDAGEKTIAWLDKLRNANGSLPTSKIRLNMQRIMQN 487

Query: 78  NACCF 83
           NA  F
Sbjct: 488 NAAVF 490

BLAST of CmaCh04G007820 vs. TAIR10
Match: AT5G66760.1 (AT5G66760.1 succinate dehydrogenase 1-1)

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-18
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 34  GARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCF 83
           G +Q PLEKDAGEKTIAWLD+LRNSNGSLPTS IRLNMQRIMQNNA  F
Sbjct: 468 GEKQKPLEKDAGEKTIAWLDRLRNSNGSLPTSTIRLNMQRIMQNNAAVF 516

BLAST of CmaCh04G007820 vs. TAIR10
Match: AT2G18450.1 (AT2G18450.1 succinate dehydrogenase 1-2)

HSP 1 Score: 85.1 bits (209), Expect = 2.5e-17
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1

Query: 30  VQFAGARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCF 83
           +Q  G +  PLEKDAGEK+I WLD++RNSNGSLPTSKIRLNMQR+MQNNA  F
Sbjct: 462 IQKPGEKLKPLEKDAGEKSIEWLDRIRNSNGSLPTSKIRLNMQRVMQNNAAVF 514

BLAST of CmaCh04G007820 vs. NCBI nr
Match: gi|694392199|ref|XP_009371587.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 1

Query: 34  GARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCFPNTGDLGRRVQ 93
           G +Q PLEKDAGEKTIAWLDK+RNSNGSLPTSKIRLNMQRIMQNNA  F     L   VQ
Sbjct: 467 GEKQKPLEKDAGEKTIAWLDKIRNSNGSLPTSKIRLNMQRIMQNNAAVFRTQETLEEGVQ 526

Query: 94  I 95
           +
Sbjct: 527 L 527

BLAST of CmaCh04G007820 vs. NCBI nr
Match: gi|1012342029|gb|KYP53226.1| (hypothetical protein KK1_024853 [Cajanus cajan])

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 1

Query: 29  VVQFAGARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCF 83
           V+ FAG +Q PLEKDAG KTI WLDKLRNSNGSLPTSKIRLNMQRIMQNNA  F
Sbjct: 459 VLHFAGEKQKPLEKDAGMKTITWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVF 512

BLAST of CmaCh04G007820 vs. NCBI nr
Match: gi|658017866|ref|XP_008344291.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 1

Query: 34  GARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCFPNTGDLGRRVQ 93
           G +Q PLEKDAGEKTIAWLDK+RNSNGSLPTSKIRLNMQRIMQNNA  F     L   VQ
Sbjct: 467 GEKQKPLEKDAGEKTIAWLDKIRNSNGSLPTSKIRLNMQRIMQNNAAVFRTQETLEEGVQ 526

Query: 94  I 95
           +
Sbjct: 527 L 527

BLAST of CmaCh04G007820 vs. NCBI nr
Match: gi|657948591|ref|XP_008338495.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 1

Query: 34  GARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCFPNTGDLGRRVQ 93
           G +Q PLEKDAGEKTIAWLDK+RNSNGSLPTSKIRLNMQRIMQNNA  F     L   VQ
Sbjct: 467 GEKQKPLEKDAGEKTIAWLDKIRNSNGSLPTSKIRLNMQRIMQNNAAVFRTQETLEEGVQ 526

Query: 94  I 95
           +
Sbjct: 527 L 527

BLAST of CmaCh04G007820 vs. NCBI nr
Match: gi|659107561|ref|XP_008453738.1| (PREDICTED: succinate dehydrogenase [ubiquinone])

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1

Query: 34  GARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNACCF 83
           GA+Q PLEKDAGEKTIAWLDKLRN+NGSLPTSKIRLNMQRIMQNNA  F
Sbjct: 469 GAKQKPLEKDAGEKTIAWLDKLRNANGSLPTSKIRLNMQRIMQNNAAVF 517

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SDHA1_ARATH4.0e-1785.71Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Ar... [more]
SDHA_ORYSJ1.2e-1681.63Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryz... [more]
SDHA2_ARATH4.5e-1673.58Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Ar... [more]
SDHA_DANRE1.0e-0752.73Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Dani... [more]
SDHX_YEAST2.5e-0646.67Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Sa... [more]
Match NameE-valueIdentityDescription
A0A151SEJ0_CAJCA1.4e-1683.33Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Caja... [more]
A0A022QQF4_ERYGU4.1e-1689.80Succinate dehydrogenase (quinone) (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv... [more]
M0TDM1_MUSAM5.3e-1687.76Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Musa... [more]
I1JCQ7_SOYBN5.3e-1681.82Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Glyc... [more]
N1R435_AEGTA6.9e-1669.23Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Aegi... [more]
Match NameE-valueIdentityDescription
AT5G66760.12.3e-1885.71 succinate dehydrogenase 1-1[more]
AT2G18450.12.5e-1773.58 succinate dehydrogenase 1-2[more]
Match NameE-valueIdentityDescription
gi|694392199|ref|XP_009371587.1|2.0e-1675.41PREDICTED: succinate dehydrogenase [ubiquinone][more]
gi|1012342029|gb|KYP53226.1|2.0e-1683.33hypothetical protein KK1_024853 [Cajanus cajan][more]
gi|658017866|ref|XP_008344291.1|2.0e-1675.41PREDICTED: succinate dehydrogenase [ubiquinone][more]
gi|657948591|ref|XP_008338495.1|2.0e-1675.41PREDICTED: succinate dehydrogenase [ubiquinone][more]
gi|659107561|ref|XP_008453738.1|3.4e-1689.80PREDICTED: succinate dehydrogenase [ubiquinone][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015939Fum_Rdtase/Succ_DH_flav-like_C
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045281 succinate dehydrogenase complex
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0008177 succinate dehydrogenase (ubiquinone) activity
molecular_function GO:0016491 oxidoreductase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G007820.1CmaCh04G007820.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015939Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminalGENE3DG3DSA:1.20.58.100coord: 39..90
score: 4.
NoneNo IPR availablePANTHERPTHR11632SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNITcoord: 34..82
score: 8.9
NoneNo IPR availablePANTHERPTHR11632:SF54SUBFAMILY NOT NAMEDcoord: 34..82
score: 8.9

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None