CmaCh04G007270 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G007270
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionHeavy metal transport/detoxification superfamily protein
LocationCma_Chr04 : 3700358 .. 3701532 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAACACAACTACAAAACTTGGACTGTTAGCATCTTCATGAACCAATCCCAATCTCCTTATAAACTGACAAATCTATGAGATTGTATAGTGGTAAAAGCCTCCTTATGATCTTAGCTTCTTCTGTTCTTGCTCTATTCTCACTCGAGTTCTTCACAATCCTGAACTAAACATGAAGGTGATTCATTATATTCACTTCTTCTCATAACATTTCTAAATTTTTCTATGTTTTTATTGGCAATTTTGGGTCATTTTCAAGAACCCTAAACAGTTTGTACTTAGAACAGCAGATAATAATGGTATAATAATTGGTTTGTTCTTATATTTTGATGCAGAAAATAGTGGTGAGAGTGGATGTACCTGATGAAAGAGCAAAGCAGAAGGCTATGAAAGCAGTTTCCTGCCTTTCAGGTACTAAGTTTCATCCTCCTCAAACTAATTTAATTAAAAAAACAAAAAACAAAATGGTTATTCAACTAAATTTTAATACATCAAAATATTATAAGTGTGACGGTCTAACCACACCGCTAACAAATATTGTCATTTTTAAAATTTTTCCATCTAGATTTCTCTCAAGGCTTTAATCCCCAATTGATGTGGGATCTCACAATTCACCTATCTTCCGAGTCCAGCGTTCTCGCTGACACTCTTTTCTTTCTCCTGTCGATATGAGACTGCCCAATCCACTTCTTTTAAAGCCCAACGTCTTTACTGGCACACTGACTTAGTGCCCACTCCCATTCGGGGCTCAATCTCCTTATTGGCACATTGGCCGGTGTCTGGTTCTGATACTATTTTTAACAGGCTAAGCCCACCACAGACAGATTTTCACACCTTTATAAAAAAATGTTTCGTTCTCCTCACCAACCGATGTGTGATCTCACGACAAGTGTGTTATAAGTTTGTGGGTGATGTTGAGGATGCAGGGATAAACTCCATAACCATGGAGATGAAAGACAGGAAGATGATCGTCGTGGGGACAGTAGACCCAGTGGAAGTAGTGGAGAAGCTGAGAAAGCTTTGGTTTGCAGAGATTCTCACAGTTGGACCTCCAAAAGAAGTGGAAATCAAAAAACCACTAATTACTTGCATTGGGTATCCCTGTTATTGTTGTAATCAGCCCCCCACCTTCTATTACAAGCAAGAGGAAATCCCAAATGGTTGTGTTCTCTGTTGA

mRNA sequence

TGAACACAACTACAAAACTTGGACTGTTAGCATCTTCATGAACCAATCCCAATCTCCTTATAAACTGACAAATCTATGAGATTGTATAGTGGTAAAAGCCTCCTTATGATCTTAGCTTCTTCTGTTCTTGCTCTATTCTCACTCGAGTTCTTCACAATCCTGAACTAAACATGAAGAAAATAGTGGTGAGAGTGGATGTACCTGATGAAAGAGCAAAGCAGAAGGCTATGAAAGCAGTTTCCTGCCTTTCAGACAGGAAGATGATCGTCGTGGGGACAGTAGACCCAGTGGAAGTAGTGGAGAAGCTGAGAAAGCTTTGGTTTGCAGAGATTCTCACAGTTGGACCTCCAAAAGAAGTGGAAATCAAAAAACCACTAATTACTTGCATTGGGTATCCCTGTTATTGTTGTAATCAGCCCCCCACCTTCTATTACAAGCAAGAGGAAATCCCAAATGGTTGTGTTCTCTGTTGA

Coding sequence (CDS)

ATGAAGAAAATAGTGGTGAGAGTGGATGTACCTGATGAAAGAGCAAAGCAGAAGGCTATGAAAGCAGTTTCCTGCCTTTCAGACAGGAAGATGATCGTCGTGGGGACAGTAGACCCAGTGGAAGTAGTGGAGAAGCTGAGAAAGCTTTGGTTTGCAGAGATTCTCACAGTTGGACCTCCAAAAGAAGTGGAAATCAAAAAACCACTAATTACTTGCATTGGGTATCCCTGTTATTGTTGTAATCAGCCCCCCACCTTCTATTACAAGCAAGAGGAAATCCCAAATGGTTGTGTTCTCTGTTGA

Protein sequence

MKKIVVRVDVPDERAKQKAMKAVSCLSDRKMIVVGTVDPVEVVEKLRKLWFAEILTVGPPKEVEIKKPLITCIGYPCYCCNQPPTFYYKQEEIPNGCVLC
BLAST of CmaCh04G007270 vs. TrEMBL
Match: A0A0A0KY75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G049110 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-19
Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 1

Query: 3   KIVVRVDVPDERAKQKAMKAVSCL----------SDRKMIVVGTVDPVEVVEKLRKLWFA 62
           K+V++VDV D +AKQKAMK VS L          ++RKM V+G VDPVEV+EKLRK WFA
Sbjct: 4   KVVLKVDVQDGKAKQKAMKLVSTLPGINSIMMDMNERKMTVIGEVDPVEVIEKLRKSWFA 63

Query: 63  EILTVGPPKEVEIK---KPLITCIGYPCYCCNQPPTFYYKQEEIPNGCVLC 101
           EILTVGPP+E++ +    P   CI YP Y     P  Y   EE PN CV+C
Sbjct: 64  EILTVGPPEEIKKEPPPSPTKECIPYPYYYPYYYPN-YIILEENPNPCVMC 113

BLAST of CmaCh04G007270 vs. TrEMBL
Match: A0A0D2QU41_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G155200 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = 1

Query: 1   MKKIVVRVDVPDERAKQKAMKAVSCLSDRKMIVVGTVDPVEVVEKLRKLWFAEILTVGPP 60
           MKK+V+++D+ D++ K+KAMKAVS LSD+KM V+G VDP++V  KL+K W  +ILTVGP 
Sbjct: 1   MKKVVLKLDLHDDKEKKKAMKAVSGLSDKKMTVIGGVDPIKVASKLKKQWHTQILTVGPA 60

Query: 61  KE--------------------VEIKKPLITCIGYPCYCCNQPPTFYYKQEEIPNGCVLC 101
           KE                     E ++       Y  Y  NQ    YY+ +E PN C++C
Sbjct: 61  KEEKKDGGKKDEGGKKDDDSKKKESEQIAELIRAYNAY--NQHMAMYYRSDEYPNSCIIC 118

BLAST of CmaCh04G007270 vs. TrEMBL
Match: A0A072TW71_MEDTR (Heavy metal transport/detoxification superfamily protein OS=Medicago truncatula GN=MTR_8g098915 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-14
Identity = 57/131 (43.51%), Postives = 72/131 (54.96%), Query Frame = 1

Query: 1   MKKIVVRVDVPDERAKQKAMKAVSCLS----------DRKMIVVGTVDPVEVVEKLRKLW 60
           MKKIVV++D+ D++AKQKAMK+VS LS          ++K+ VVG +DPV+VV KLRK W
Sbjct: 1   MKKIVVKLDLHDDKAKQKAMKSVSSLSGIDSIAMDMKEKKLTVVGDIDPVDVVSKLRKTW 60

Query: 61  FAEILTVGPPKEVEIKKP-------------------LITCIGYPCYCCNQPPTFYYKQ- 101
             EILTVGP KE E KK                    +    GY  Y       +Y+ Q 
Sbjct: 61  HTEILTVGPAKEPEKKKDDGKKDDNKKKDPNEQIAELIKQYKGYNPYMTQ----YYHVQS 120

BLAST of CmaCh04G007270 vs. TrEMBL
Match: V4VJ77_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022806mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.8e-14
Identity = 57/136 (41.91%), Postives = 72/136 (52.94%), Query Frame = 1

Query: 1   MKKIVVRVDVPDERAKQKAMKAVSCLS----------DRKMIVVGTVDPVEVVEKLR-KL 60
           MKK+V+++D+ D++AKQKAMKAVS +S          D K+ VVG VDP++VV+KLR K 
Sbjct: 1   MKKVVLKLDLHDDKAKQKAMKAVSSISGIESIAIDMKDNKLTVVGDVDPIDVVKKLRKKQ 60

Query: 61  WFAEILTVGPPKEVEIKKPL--------------------------ITCIGYPCYCCNQP 100
           W+AEILTVGP KE   KKP                           I    Y  Y    P
Sbjct: 61  WYAEILTVGPAKEE--KKPDDKKKEEDKKKEDDKKKNPNEQQLAELIRAYQYQAYNPYMP 120

BLAST of CmaCh04G007270 vs. TrEMBL
Match: A0A0S3QXG8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G049200 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.9e-14
Identity = 58/137 (42.34%), Postives = 71/137 (51.82%), Query Frame = 1

Query: 1   MKKIVVRVDVPDERAKQKAMKAVSCL----------SDRKMIVVGTVDPVEVVEKLRKLW 60
           MKK+VV++D+ DE+AKQKAMK+VS L           ++K+ VVG VDPV VV KLRK W
Sbjct: 1   MKKVVVKLDLHDEKAKQKAMKSVSSLPGIDSISMDMKEKKLTVVGDVDPVSVVSKLRKSW 60

Query: 61  FAEILTVGPPKEVEIKK------------------------PLITCIGYPCYCCNQP--P 100
             EI+TVGP KE E KK                         L+       Y  N P  P
Sbjct: 61  HTEIVTVGPAKEAEKKKDEEKKDDNKKKDDEKKKDPNQQIEELV-----KIYKANNPHMP 120

BLAST of CmaCh04G007270 vs. TAIR10
Match: AT1G01490.1 (AT1G01490.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 6.8e-13
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1

Query: 1  MKKIVVRVDVPDERAKQKAMKAVSCL----------SDRKMIVVGTVDPVEVVEKLRKLW 60
          MKKIV+++D+ D+RAKQKA+K VS L           ++K+ V+GTVDPV VV KLRK W
Sbjct: 1  MKKIVLKLDLHDDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYW 60

Query: 61 -FAEILTVGPPKEVEIKK 68
             +I+ VGP KE E +K
Sbjct: 61 PMTDIVLVGPAKEPEKEK 78

BLAST of CmaCh04G007270 vs. TAIR10
Match: AT5G52740.1 (AT5G52740.1 Copper transport protein family)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1

Query: 1  MKKIVVRVDVPDERAKQKAMKAVSCLS--------DRKMIVVGTVDPVEVVEKLRKLWFA 60
          M+ +V+++DV  E+ KQKAM  V CLS        D K+ V G +D   +V+KL+K+   
Sbjct: 1  MQVVVLKLDVHCEKTKQKAMSTVCCLSGVNSVEVKDGKLTVTGEIDAYMIVKKLKKICHT 60

Query: 61 EILTVGPPKEVEIKKP 69
          E ++VGP KE E KKP
Sbjct: 61 EFISVGPVKEPEKKKP 76

BLAST of CmaCh04G007270 vs. NCBI nr
Match: gi|778697516|ref|XP_011654340.1| (PREDICTED: putative late blight resistance protein homolog R1B-17 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-19
Identity = 59/111 (53.15%), Postives = 72/111 (64.86%), Query Frame = 1

Query: 3   KIVVRVDVPDERAKQKAMKAVSCL----------SDRKMIVVGTVDPVEVVEKLRKLWFA 62
           K+V++VDV D +AKQKAMK VS L          ++RKM V+G VDPVEV+EKLRK WFA
Sbjct: 4   KVVLKVDVQDGKAKQKAMKLVSTLPGINSIMMDMNERKMTVIGEVDPVEVIEKLRKSWFA 63

Query: 63  EILTVGPPKEVEIK---KPLITCIGYPCYCCNQPPTFYYKQEEIPNGCVLC 101
           EILTVGPP+E++ +    P   CI YP Y     P  Y   EE PN CV+C
Sbjct: 64  EILTVGPPEEIKKEPPPSPTKECIPYPYYYPYYYPN-YIILEENPNPCVMC 113

BLAST of CmaCh04G007270 vs. NCBI nr
Match: gi|659102209|ref|XP_008452009.1| (PREDICTED: putative late blight resistance protein homolog R1B-17 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-18
Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 1

Query: 3   KIVVRVDVPDERAKQKAMKAVSCL----------SDRKMIVVGTVDPVEVVEKLRKLWFA 62
           K+V++VDV D +AKQKAMK+VS L          ++RKM V+G VDPVEVVEKLRK WFA
Sbjct: 4   KVVLKVDVQDGKAKQKAMKSVSTLPGINSIMMDMNERKMTVIGEVDPVEVVEKLRKFWFA 63

Query: 63  EILTVGPPKEVEIK---KPLITC-IGYPCYCCNQPPTFYYKQEEIPNGCVLC 101
           EILTVGPP+ ++ K    P I C I YP YC    P +    EE PN CV+C
Sbjct: 64  EILTVGPPEVIQEKLPPTPTIDCWIPYP-YCY---PNYPIILEENPNPCVIC 111

BLAST of CmaCh04G007270 vs. NCBI nr
Match: gi|763753203|gb|KJB20591.1| (hypothetical protein B456_003G155200 [Gossypium raimondii])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = 1

Query: 1   MKKIVVRVDVPDERAKQKAMKAVSCLSDRKMIVVGTVDPVEVVEKLRKLWFAEILTVGPP 60
           MKK+V+++D+ D++ K+KAMKAVS LSD+KM V+G VDP++V  KL+K W  +ILTVGP 
Sbjct: 1   MKKVVLKLDLHDDKEKKKAMKAVSGLSDKKMTVIGGVDPIKVASKLKKQWHTQILTVGPA 60

Query: 61  KE--------------------VEIKKPLITCIGYPCYCCNQPPTFYYKQEEIPNGCVLC 101
           KE                     E ++       Y  Y  NQ    YY+ +E PN C++C
Sbjct: 61  KEEKKDGGKKDEGGKKDDDSKKKESEQIAELIRAYNAY--NQHMAMYYRSDEYPNSCIIC 118

BLAST of CmaCh04G007270 vs. NCBI nr
Match: gi|922338233|ref|XP_013447106.1| (heavy metal transport/detoxification superfamily protein [Medicago truncatula])

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-14
Identity = 57/131 (43.51%), Postives = 72/131 (54.96%), Query Frame = 1

Query: 1   MKKIVVRVDVPDERAKQKAMKAVSCLS----------DRKMIVVGTVDPVEVVEKLRKLW 60
           MKKIVV++D+ D++AKQKAMK+VS LS          ++K+ VVG +DPV+VV KLRK W
Sbjct: 1   MKKIVVKLDLHDDKAKQKAMKSVSSLSGIDSIAMDMKEKKLTVVGDIDPVDVVSKLRKTW 60

Query: 61  FAEILTVGPPKEVEIKKP-------------------LITCIGYPCYCCNQPPTFYYKQ- 101
             EILTVGP KE E KK                    +    GY  Y       +Y+ Q 
Sbjct: 61  HTEILTVGPAKEPEKKKDDGKKDDNKKKDPNEQIAELIKQYKGYNPYMTQ----YYHVQS 120

BLAST of CmaCh04G007270 vs. NCBI nr
Match: gi|567893972|ref|XP_006439474.1| (hypothetical protein CICLE_v10022806mg [Citrus clementina])

HSP 1 Score: 84.7 bits (208), Expect = 9.8e-14
Identity = 57/136 (41.91%), Postives = 72/136 (52.94%), Query Frame = 1

Query: 1   MKKIVVRVDVPDERAKQKAMKAVSCLS----------DRKMIVVGTVDPVEVVEKLR-KL 60
           MKK+V+++D+ D++AKQKAMKAVS +S          D K+ VVG VDP++VV+KLR K 
Sbjct: 1   MKKVVLKLDLHDDKAKQKAMKAVSSISGIESIAIDMKDNKLTVVGDVDPIDVVKKLRKKQ 60

Query: 61  WFAEILTVGPPKEVEIKKPL--------------------------ITCIGYPCYCCNQP 100
           W+AEILTVGP KE   KKP                           I    Y  Y    P
Sbjct: 61  WYAEILTVGPAKEE--KKPDDKKKEEDKKKEDDKKKNPNEQQLAELIRAYQYQAYNPYMP 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KY75_CUCSA2.4e-1953.15Uncharacterized protein OS=Cucumis sativus GN=Csa_4G049110 PE=4 SV=1[more]
A0A0D2QU41_GOSRA1.2e-1540.83Uncharacterized protein OS=Gossypium raimondii GN=B456_003G155200 PE=4 SV=1[more]
A0A072TW71_MEDTR3.1e-1443.51Heavy metal transport/detoxification superfamily protein OS=Medicago truncatula ... [more]
V4VJ77_9ROSI6.8e-1441.91Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022806mg PE=4 SV=1[more]
A0A0S3QXG8_PHAAN8.9e-1442.34Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G049200 PE=... [more]
Match NameE-valueIdentityDescription
AT1G01490.16.8e-1351.28 Heavy metal transport/detoxification superfamily protein [more]
AT5G52740.11.2e-0943.42 Copper transport protein family[more]
Match NameE-valueIdentityDescription
gi|778697516|ref|XP_011654340.1|3.5e-1953.15PREDICTED: putative late blight resistance protein homolog R1B-17 [Cucumis sativ... [more]
gi|659102209|ref|XP_008452009.1|1.3e-1854.46PREDICTED: putative late blight resistance protein homolog R1B-17 [Cucumis melo][more]
gi|763753203|gb|KJB20591.1|1.8e-1540.83hypothetical protein B456_003G155200 [Gossypium raimondii][more]
gi|922338233|ref|XP_013447106.1|4.4e-1443.51heavy metal transport/detoxification superfamily protein [Medicago truncatula][more]
gi|567893972|ref|XP_006439474.1|9.8e-1441.91hypothetical protein CICLE_v10022806mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0030001 metal ion transport
biological_process GO:0046916 cellular transition metal ion homeostasis
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
molecular_function GO:0046872 metal ion binding
molecular_function GO:0046914 transition metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G007270.1CmaCh04G007270.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22814COPPER TRANSPORT PROTEIN ATOX1-RELATEDcoord: 1..99
score: 5.1
NoneNo IPR availablePANTHERPTHR22814:SF77HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEINcoord: 1..99
score: 5.1

The following gene(s) are paralogous to this gene:

None