CmaCh04G006800 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G006800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	SGNH hydrolase-type esterase superfamily protein
Location	Cma_Chr04 : 3462878 .. 3463982 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTAATCTGCTAATTGCCCTAATCTTCCTCCTCATTTCCATCATTGGTCTTCAATCAACAGCTCTGCTAAACCCTAAAGATTACAATCATTTGGCGCCGAGCTCTAATGGCTTCACAGTCCCTCCAAATTCATCTTTTCCGATTTCCCCCGCCGCTCCGCCTCCGTCGAATTCTCTAGTCCCCGCCGTTTTCATCATCGGCAACTCTACATGCGAGTGCGGCACCAAAAATTTACTTGGTACCTTTGCTCGCGCCCATCACCTTCCCTATTGTCGAGATTTCGACTGGAAGGTTTTGTAATGGAAGAATACCCGTCGATTTTCCTGGTAATGTTAGTTTAGATTTTTGATATTTTGTTTGTTTATGATTTGATGTTTAGTCATTTATTTTAGGTTTGATCTCTGTTTTTTGTTCACTCCGTCTCGTGATTTCTGAATTTCCGATTTGATCTTTTATTTCTCTTTCGTTTTAAATTTCTGGATGGTCATTTCGCCCTGCGTCTTGGACTACCGTTTGTTCCGAGTTATCTTTGGCATGCCGGAACGGTGGAAGATATGATTTAAGGAGTGAATTATGCATCAGCTAGTGCTAGAGTTATCTTCACTAGTGGATCGGAATTGGTACTTCTTTTTCTTCAATTTCAACAAGTTGTATCAATTGATTAAAATCATCGAGAAAAGTTCTAAGCAAATGGATCAGTTTCAAATCAAATGACCTAGGCTTCGATAACTGGATTGAATTGTTCAATTATTTCCATTTCTTTCAGCATTTTAATGTTCATTTATAATCTTACGTTGATTTAGATGGTAGATATCATCGCAGTTATATGACTTTTAACATTATCCGCCAAGGAGATGGAATTATAAGTCGGTATTATGGTTTATATTTCTCATACTCTCTTGCCTTTTTGAAATGTGATTTTTCACAGGGCCAACACATTTTCTTCACTCAGCAAATTCAGCAATTTATGAACACTTTTCAGCAGAAGGCTGCTGCCTATCACATTTCCCGCTCAGTCTTTTACATATCTATTGGAATCAACGATTACATTCATTACTATCTGTTTATCATATCTAGCGTGCAAAATGTTTACCCTTGA

mRNA sequence

ATGGAGCTTAATCTGCTAATTGCCCTAATCTTCCTCCTCATTTCCATCATTGGTCTTCAATCAACAGCTCTGCTAAACCCTAAAGATTACAATCATTTGGCGCCGAGCTCTAATGGCTTCACAGTCCCTCCAAATTCATCTTTTCCGATTTCCCCCGCCGCTCCGCCTCCGTCGAATTCTCTAGTCCCCGCCGTTTTCATCATCGGCAACTCTACATGCGAGTGCGGCACCAAAAATTTACTTGGTACCTTTGCTCGCGCCCATCACCTTCCCTATTGTCGAGATTTCGACTGGAAGGGCCAACACATTTTCTTCACTCAGCAAATTCAGCAATTTATGAACACTTTTCAGCAGAAGGCTGCTGCCTATCACATTTCCCGCTCAGTCTTTTACATATCTATTGGAATCAACGATTACATTCATTACTATCTGTTTATCATATCTAGCGTGCAAAATGTTTACCCTTGA

Coding sequence (CDS)

ATGGAGCTTAATCTGCTAATTGCCCTAATCTTCCTCCTCATTTCCATCATTGGTCTTCAATCAACAGCTCTGCTAAACCCTAAAGATTACAATCATTTGGCGCCGAGCTCTAATGGCTTCACAGTCCCTCCAAATTCATCTTTTCCGATTTCCCCCGCCGCTCCGCCTCCGTCGAATTCTCTAGTCCCCGCCGTTTTCATCATCGGCAACTCTACATGCGAGTGCGGCACCAAAAATTTACTTGGTACCTTTGCTCGCGCCCATCACCTTCCCTATTGTCGAGATTTCGACTGGAAGGGCCAACACATTTTCTTCACTCAGCAAATTCAGCAATTTATGAACACTTTTCAGCAGAAGGCTGCTGCCTATCACATTTCCCGCTCAGTCTTTTACATATCTATTGGAATCAACGATTACATTCATTACTATCTGTTTATCATATCTAGCGTGCAAAATGTTTACCCTTGA

Protein sequence

MELNLLIALIFLLISIIGLQSTALLNPKDYNHLAPSSNGFTVPPNSSFPISPAAPPPSNSLVPAVFIIGNSTCECGTKNLLGTFARAHHLPYCRDFDWKGQHIFFTQQIQQFMNTFQQKAAAYHISRSVFYISIGINDYIHYYLFIISSVQNVYP

Homology

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BLAST of CmaCh04G006800 vs. TrEMBL
Match: A0A0A0L7F0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G270280 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 1   MELNLLIALIFLLISIIGLQSTALL-NPKDY-NHLAPSSN-GFTVPPNSSFPISPAAPPP 60
           M L+LLI+L F+LIS + LQSTA L NP  + N L P+ N GFT  PNSSFPI P  PPP
Sbjct: 1   MALSLLISLFFILISSVFLQSTAPLPNPAPHPNPLPPTPNYGFTTIPNSSFPIPPPLPPP 60

Query: 61  -SNSLVPAVFIIGNSTCECGTKNLLGTFARAHHLPYCRDFD 98
            SNSLVPA+F+IG+ST + GT N LGTFARA HLPY RDFD
Sbjct: 61  PSNSLVPALFVIGDSTVDSGTNNFLGTFARADHLPYGRDFD 101

[Close]

BLAST of CmaCh04G006800 vs. TrEMBL
Match: V4VIS5_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023992mg PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 81/212 (38.21%), Postives = 106/212 (50.00%), Query Frame = 1


Query: 2   ELNLLIALI-FLLISIIGLQSTALLNPKDYNHLAPSS---NGFTVPPNSSFPISPAAPPP 61
           +L LL+A+   L +S I   S AL  P+D+ + +PSS   +  ++ P+S  P    +P P
Sbjct: 35  QLTLLVAVAKALTLSAIFNPSRALEFPEDFFNYSPSSIPISHISISPSSISPSQSQSPSP 94

Query: 62  -----------SNSLVPAVFIIGNSTCECGTKNLLGTFARAHHLPYCRDFDW---KGQHI 121
                      S+ LVPA+F+IG+S+ + GT N LGTFARA  LPY RDFD     G ++
Sbjct: 95  TPASVQAPSPESHPLVPALFVIGDSSVDSGTNNFLGTFARADRLPYGRDFDTHQPTGSYL 154

Query: 122 FFT------------------------QQIQQ----------FMNTFQQKA------AAY 155
             T                         Q+ Q          F +T+QQ         A 
Sbjct: 155 NQTGGVEGMIHGVNYASAGAGIIFSSGSQLGQRISLTQQIQQFTDTYQQFIINMGEDPAA 214

[Close]

BLAST of CmaCh04G006800 vs. TrEMBL
Match: A0A061G661_THECC (SGNH hydrolase-type esterase superfamily protein OS=Theobroma cacao GN=TCM_016486 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-10
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 1   MELNLLIALIFLLISIIGLQSTALLNPKDYNHLAPSSNGFTVPPNSSFP----------I 60
           M  N+L+A++FL+ +I+   S AL  P++  +   SSN  ++  N S P          +
Sbjct: 1   MVTNILVAILFLISTILS-HSKALRFPQELFNF--SSNQISIVDNPSRPPSSSASPTPLL 60

Query: 61  SPAAPPPSNSLVPAVFIIGNSTCECGTKNLLGTFARAHHLPYCRDFD 98
           SPA+P  S+ LVPA+FIIG+ST +CG  N LGTFARA   PY RDFD
Sbjct: 61  SPASPTVSSPLVPALFIIGDSTVDCGNNNFLGTFARADRPPYGRDFD 104

[Close]

BLAST of CmaCh04G006800 vs. TrEMBL
Match: A0A0B2QVH8_GLYSO (GDSL esterase/lipase OS=Glycine soja GN=glysoja_018210 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-10
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 100 GQHIFFTQQIQQFMNTFQQ-------KAAAYHISRSVFYISIGINDYIHYYLFIISSVQN 155
           GQHI  TQQIQQF +T QQ        AA  HIS SVFYISIGINDYIHYYL  +S+V N
Sbjct: 145 GQHISLTQQIQQFTDTLQQFILNMGEDAATNHISNSVFYISIGINDYIHYYLLNVSNVDN 204

[Close]

BLAST of CmaCh04G006800 vs. TrEMBL
Match: I1JAF0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G226300 PE=4 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-10
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 100 GQHIFFTQQIQQFMNTFQQ-------KAAAYHISRSVFYISIGINDYIHYYLFIISSVQN 155
           GQHI  TQQIQQF +T QQ        AA  HIS SVFYISIGINDYIHYYL  +S+V N
Sbjct: 145 GQHISLTQQIQQFTDTLQQFILNMGEDAATNHISNSVFYISIGINDYIHYYLLNVSNVDN 204

[Close]

BLAST of CmaCh04G006800 vs. TAIR10
Match: AT4G10950.1 (AT4G10950.1 SGNH hydrolase-type esterase superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 100 GQHIFFTQQIQQFMNTFQQ-------KAAAYHISRSVFYISIGINDYIHYYLFIISSVQN 155
           GQ + F  Q++QF++TFQQ       KA+   +S SVFYISIG+NDYIH+Y+  IS+VQN
Sbjct: 162 GQRVSFAMQVEQFVDTFQQMILSIGEKASERLVSNSVFYISIGVNDYIHFYIRNISNVQN 221

[Close]

BLAST of CmaCh04G006800 vs. NCBI nr
Match: gi|778680644|ref|XP_004145656.2| (PREDICTED: GDSL esterase/lipase At1g71691 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 2.2e-20
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 1


Query: 1   MELNLLIALIFLLISIIGLQSTALL-NPKDY-NHLAPSSN-GFTVPPNSSFPISPAAPPP 60
           M L+LLI+L F+LIS + LQSTA L NP  + N L P+ N GFT  PNSSFPI P  PPP
Sbjct: 1   MALSLLISLFFILISSVFLQSTAPLPNPAPHPNPLPPTPNYGFTTIPNSSFPIPPPLPPP 60

Query: 61  -SNSLVPAVFIIGNSTCECGTKNLLGTFARAHHLPYCRDFD 98
            SNSLVPA+F+IG+ST + GT N LGTFARA HLPY RDFD
Sbjct: 61  PSNSLVPALFVIGDSTVDSGTNNFLGTFARADHLPYGRDFD 101

[Close]

BLAST of CmaCh04G006800 vs. NCBI nr
Match: gi|659102611|ref|XP_008452220.1| (PREDICTED: GDSL esterase/lipase At1g71691-like [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 5.4e-19
Identity = 65/103 (63.11%), Postives = 76/103 (73.79%), Query Frame = 1


Query: 1   MELNLLIALIFLLISIIGLQS-TALLNPKDY-NHLAPSS--NGFTVPPNSSFPI--SPAA 60
           M L+L I+L F+LIS + LQS T L N   + N LAPS+  +GFT  PNSSFPI  SP  
Sbjct: 1   MALSLPISLFFILISSVFLQSATPLPNSAPHPNPLAPSTPNDGFTTIPNSSFPIPPSPLP 60

Query: 61  PPPSNSLVPAVFIIGNSTCECGTKNLLGTFARAHHLPYCRDFD 98
           PPPSNSLVPA+F+IG+ST + GT N LGTFARA HLPY RDFD
Sbjct: 61  PPPSNSLVPALFVIGDSTVDSGTNNFLGTFARADHLPYGRDFD 103

[Close]

BLAST of CmaCh04G006800 vs. NCBI nr
Match: gi|567893672|ref|XP_006439324.1| (hypothetical protein CICLE_v10023992mg, partial [Citrus clementina])

HSP 1 Score: 85.9 bits (211), Expect = 6.8e-14
Identity = 81/212 (38.21%), Postives = 106/212 (50.00%), Query Frame = 1


Query: 2   ELNLLIALI-FLLISIIGLQSTALLNPKDYNHLAPSS---NGFTVPPNSSFPISPAAPPP 61
           +L LL+A+   L +S I   S AL  P+D+ + +PSS   +  ++ P+S  P    +P P
Sbjct: 35  QLTLLVAVAKALTLSAIFNPSRALEFPEDFFNYSPSSIPISHISISPSSISPSQSQSPSP 94

Query: 62  -----------SNSLVPAVFIIGNSTCECGTKNLLGTFARAHHLPYCRDFDW---KGQHI 121
                      S+ LVPA+F+IG+S+ + GT N LGTFARA  LPY RDFD     G ++
Sbjct: 95  TPASVQAPSPESHPLVPALFVIGDSSVDSGTNNFLGTFARADRLPYGRDFDTHQPTGSYL 154

Query: 122 FFT------------------------QQIQQ----------FMNTFQQKA------AAY 155
             T                         Q+ Q          F +T+QQ         A 
Sbjct: 155 NQTGGVEGMIHGVNYASAGAGIIFSSGSQLGQRISLTQQIQQFTDTYQQFIINMGEDPAA 214

[Close]

BLAST of CmaCh04G006800 vs. NCBI nr
Match: gi|590679348|ref|XP_007040555.1| (SGNH hydrolase-type esterase superfamily protein [Theobroma cacao])

HSP 1 Score: 72.8 bits (177), Expect = 6.0e-10
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 1   MELNLLIALIFLLISIIGLQSTALLNPKDYNHLAPSSNGFTVPPNSSFP----------I 60
           M  N+L+A++FL+ +I+   S AL  P++  +   SSN  ++  N S P          +
Sbjct: 1   MVTNILVAILFLISTILS-HSKALRFPQELFNF--SSNQISIVDNPSRPPSSSASPTPLL 60

Query: 61  SPAAPPPSNSLVPAVFIIGNSTCECGTKNLLGTFARAHHLPYCRDFD 98
           SPA+P  S+ LVPA+FIIG+ST +CG  N LGTFARA   PY RDFD
Sbjct: 61  SPASPTVSSPLVPALFIIGDSTVDCGNNNFLGTFARADRPPYGRDFD 104

[Close]

BLAST of CmaCh04G006800 vs. NCBI nr
Match: gi|955304146|ref|XP_003516723.3| (PREDICTED: GDSL esterase/lipase At5g08460 [Glycine max])

HSP 1 Score: 72.4 bits (176), Expect = 7.8e-10
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 100 GQHIFFTQQIQQFMNTFQQ-------KAAAYHISRSVFYISIGINDYIHYYLFIISSVQN 155
           GQHI  TQQIQQF +T QQ        AA  HIS SVFYISIGINDYIHYYL  +S+V N
Sbjct: 145 GQHISLTQQIQQFTDTLQQFILNMGEDAATNHISNSVFYISIGINDYIHYYLLNVSNVDN 204

The following BLAST results are available for this feature:

BLAST of CmaCh04G006800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G006800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7F0_CUCSA	1.5e-20	65.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G270280 PE=4 SV=1	[more]
V4VIS5_9ROSI	4.8e-14	38.21	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023992mg PE=...	[more]
A0A061G661_THECC	4.2e-10	44.86	SGNH hydrolase-type esterase superfamily protein OS=Theobroma cacao GN=TCM_01648...	[more]
A0A0B2QVH8_GLYSO	5.4e-10	64.52	GDSL esterase/lipase OS=Glycine soja GN=glysoja_018210 PE=4 SV=1	[more]
I1JAF0_SOYBN	5.4e-10	64.52	Uncharacterized protein OS=Glycine max GN=GLYMA_01G226300 PE=4 SV=2	[more]

BLAST of CmaCh04G006800 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10950.1	1.3e-10	53.23	SGNH hydrolase-type esterase superfamily protein	[more]

BLAST of CmaCh04G006800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680644\|ref\|XP_004145656.2\|	2.2e-20	65.35	PREDICTED: GDSL esterase/lipase At1g71691 [Cucumis sativus]	[more]
gi\|659102611\|ref\|XP_008452220.1\|	5.4e-19	63.11	PREDICTED: GDSL esterase/lipase At1g71691-like [Cucumis melo]	[more]
gi\|567893672\|ref\|XP_006439324.1\|	6.8e-14	38.21	hypothetical protein CICLE_v10023992mg, partial [Citrus clementina]	[more]
gi\|590679348\|ref\|XP_007040555.1\|	6.0e-10	44.86	SGNH hydrolase-type esterase superfamily protein [Theobroma cacao]	[more]
gi\|955304146\|ref\|XP_003516723.3\|	7.8e-10	64.52	PREDICTED: GDSL esterase/lipase At5g08460 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0052889	9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0052887	7,9,9'-tricis-neurosporene:quinone oxidoreductase activity
molecular_function	GO:0052886	9,9'-dicis-carotene:quinone oxidoreductase activity
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G006800.1	CmaCh04G006800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22835	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	coord: 1..28 score: 9.1E-29coord: 61..154 score: 9.1
None	No IPR available	PANTHER	PTHR22835:SF281	SGNH HYDROLASE-TYPE ESTERASE SUPERFAMILY PROTEIN	coord: 61..154 score: 9.1E-29coord: 1..28 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G006800	Carg13078	Silver-seed gourd	carcmaB0055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G006800	Cucurbita maxima (Rimu)	cmacmaB328
CmaCh04G006800	Cucurbita maxima (Rimu)	cmacmaB350
CmaCh04G006800	Cucumber (Gy14) v1	cgycmaB0279
CmaCh04G006800	Cucurbita moschata (Rifu)	cmacmoB697
CmaCh04G006800	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G006800	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G006800	Wild cucumber (PI 183967)	cmacpiB721
CmaCh04G006800	Cucumber (Chinese Long) v2	cmacuB713
CmaCh04G006800	Melon (DHL92) v3.5.1	cmameB638
CmaCh04G006800	Melon (DHL92) v3.5.1	cmameB694
CmaCh04G006800	Watermelon (Charleston Gray)	cmawcgB635
CmaCh04G006800	Watermelon (Charleston Gray)	cmawcgB671
CmaCh04G006800	Watermelon (97103) v1	cmawmB694
CmaCh04G006800	Watermelon (97103) v1	cmawmB712
CmaCh04G006800	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G006800	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G006800	Bottle gourd (USVL1VR-Ls)	cmalsiB624
CmaCh04G006800	Bottle gourd (USVL1VR-Ls)	cmalsiB699
CmaCh04G006800	Cucumber (Gy14) v2	cgybcmaB547
CmaCh04G006800	Cucumber (Gy14) v2	cgybcmaB661
CmaCh04G006800	Melon (DHL92) v3.6.1	cmamedB724
CmaCh04G006800	Melon (DHL92) v3.6.1	cmamedB782
CmaCh04G006800	Melon (DHL92) v3.6.1	cmamedB792
CmaCh04G006800	Silver-seed gourd	carcmaB0509
CmaCh04G006800	Cucumber (Chinese Long) v3	cmacucB0847
CmaCh04G006800	Cucumber (Chinese Long) v3	cmacucB0872
CmaCh04G006800	Watermelon (97103) v2	cmawmbB706
CmaCh04G006800	Watermelon (97103) v2	cmawmbB776
CmaCh04G006800	Wax gourd	cmawgoB0829
CmaCh04G006800	Wax gourd	cmawgoB0853