CmaCh04G005930 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G005930
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 2990144 .. 2991158 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCGCATATCGCCCGCAGGCCTTTCCCCGGCGCCTCAACCTATCGGAACCCTCTTTAGCTACCACTTCCAGCGTCTCCACCAATGATTCCACGTTCGGAGCGAAAAGGAATCCGTACTCATCATCAACAACAATGGTGCCCTTTATGCTCGGAAACCTTGACGCCATTACAGGTTTCCCGCTTGCCATAGCCTCCATCAGAGTCAGGTCCAATCCCTGTGGCCGTAGCGTTGGATTCACGAAGATGTCGATCGAATTGTAGAAAGCCCTAAGTTCTGACGGACTCATCGATCCTAAAACCAGAACTCGAGGACCTAGATCCCTGTACCGCTGTTCCCATGGTCCTGCTCCGGCGACGATCAGGTAGATGTCCGGATGCTGCTCTGTGATGATGGAGAAAGCTTCGTGAAGTAGCGGATGGCCTTTGTCTTTCACTAATCTTCCGGCGACTCCGAGGACTAGACTTGCGTTTCCAGGTATTCCGATTCGAGCCCTAAATTCTTGACCTAATTTGAAATCCTCGCCGAAATCGTCCTCGTCGACGCCATTGACGATCACATGGACTCTTCTGCTTGGAATTTGGTACACATCTCGGAGCATCTCTCCGCAACTGTCGCTAATCGCGACGTGGTGAGCGTAATTTTTGAAGAATCGGATCTCATTCAGTACCTTCGGGACATCGCCTTGAATATTCATGTTGAAGGCCGGCGACATCGGCTCGTTCGGCCGGCGGGCTAGGTCCTGGAATAAGTCCGATTGCAAGCTCTCTAGGGCAATCCCATGCCAAGAAACTGCGAGATTCGAGAGCTTTTTGGCTACTCCGTGAGGCAGTGCAACGCTTTCTGTGTGAACAACGTCGAATGGTTCTCGGTGGTTTTCTTCTTCATATTGCTCCCAAGCTTTGTTGTAGCGCCACCGGCCTGGTTCACCGTCGTGCCAATGGATGTACGGCGCTGAAGTTGCAGACGAGAGGTTTTGAACAACGCCATAATCGGGCGGTGGTGAGGTGA

mRNA sequence

ATGGACGCCGCATATCGCCCGCAGGCCTTTCCCCGGCGCCTCAACCTATCGGAACCCTCTTTAGCTACCACTTCCAGCGTCTCCACCAATGATTCCACGTTCGGAGCGAAAAGGAATCCGTACTCATCATCAACAACAATGGTGCCCTTTATGCTCGGAAACCTTGACGCCATTACAGGTTTCCCGCTTGCCATAGCCTCCATCAGAGTCAGGTCCAATCCCTGTGGCCGTAGCGTTGGATTCACGAAGATGTCGATCGAATTGCCGGCGACATCGGCTCGTTCGGCCGGCGGGCTAGGTCCTGGAATAAGTCCGATTGCAAGCTCTCTAGGGCAATCCCATGCCAAGAAACTGCGAGATTCGAGAGCTTTTTGGCTACTCCGTGAGGCAGTGCAACGCTTTCTGTGTGAACAACGTCGAATGGTTCTCGGTGGTTTTCTTCTTCATATTGCTCCCAAGCTTTGTTGTAGCGCCACCGGCCTGGTTCACCGTCGTGCCAATGGATGTACGGCGCTGAAGTTGCAGACGAGAGGTTTTGAACAACGCCATAATCGGGCGGTGGTGAGGTGA

Coding sequence (CDS)

ATGGACGCCGCATATCGCCCGCAGGCCTTTCCCCGGCGCCTCAACCTATCGGAACCCTCTTTAGCTACCACTTCCAGCGTCTCCACCAATGATTCCACGTTCGGAGCGAAAAGGAATCCGTACTCATCATCAACAACAATGGTGCCCTTTATGCTCGGAAACCTTGACGCCATTACAGGTTTCCCGCTTGCCATAGCCTCCATCAGAGTCAGGTCCAATCCCTGTGGCCGTAGCGTTGGATTCACGAAGATGTCGATCGAATTGCCGGCGACATCGGCTCGTTCGGCCGGCGGGCTAGGTCCTGGAATAAGTCCGATTGCAAGCTCTCTAGGGCAATCCCATGCCAAGAAACTGCGAGATTCGAGAGCTTTTTGGCTACTCCGTGAGGCAGTGCAACGCTTTCTGTGTGAACAACGTCGAATGGTTCTCGGTGGTTTTCTTCTTCATATTGCTCCCAAGCTTTGTTGTAGCGCCACCGGCCTGGTTCACCGTCGTGCCAATGGATGTACGGCGCTGAAGTTGCAGACGAGAGGTTTTGAACAACGCCATAATCGGGCGGTGGTGAGGTGA

Protein sequence

MDAAYRPQAFPRRLNLSEPSLATTSSVSTNDSTFGAKRNPYSSSTTMVPFMLGNLDAITGFPLAIASIRVRSNPCGRSVGFTKMSIELPATSARSAGGLGPGISPIASSLGQSHAKKLRDSRAFWLLREAVQRFLCEQRRMVLGGFLLHIAPKLCCSATGLVHRRANGCTALKLQTRGFEQRHNRAVVR
Homology
[Close]
BLAST of CmaCh04G005930 vs. TrEMBL
Match: M5WB17_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013104mg PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 69/168 (41.07%), Postives = 75/168 (44.64%), Query Frame = 1 

Query: 1   MDAAYRPQAFPRRLNLSEPSLATTSSVSTNDSTFGAKRNPYSSSTTMVPFMLGNLDAITG 60
           M+ AY   AFP    L  PS    S  S NDST G    PYSSSTT+VP MLGNLDAI G
Sbjct: 1   MEFAYSKHAFPLCAALFGPSFTANSKASNNDSTLGENIKPYSSSTTIVPLMLGNLDAIIG 60

Query: 61  FPLAIASIRVRSNPCGRSVGFTKMSIELPATSARSAGGLGPGISPIASSLGQSHAKKLRD 120
           FPL IAS  V S                          LG  +S  ASSLG  HA  L+ 
Sbjct: 61  FPLIIASGYVPS--------------------------LGRCMS--ASSLGLCHAMTLQG 120

Query: 121 SRAFWLLREAVQRFLCEQRRMVLGGFLLHIAPKLCCSATGLVHRRANG 169
                   E    F  E RR+   GF   I P  CC+A    H R NG
Sbjct: 121 LGGPGPANEEAPHFQSEPRRIFHVGFAPKIVPMPCCNAKSPAHPRGNG 140

[Close]
BLAST of CmaCh04G005930 vs. NCBI nr
Match: gi|595849573|ref|XP_007209753.1| (hypothetical protein PRUPE_ppa013104mg [Prunus persica])

HSP 1 Score: 90.5 bits (223), Expect = 3.4e-15
Identity = 69/168 (41.07%), Postives = 75/168 (44.64%), Query Frame = 1 

Query: 1   MDAAYRPQAFPRRLNLSEPSLATTSSVSTNDSTFGAKRNPYSSSTTMVPFMLGNLDAITG 60
           M+ AY   AFP    L  PS    S  S NDST G    PYSSSTT+VP MLGNLDAI G
Sbjct: 1   MEFAYSKHAFPLCAALFGPSFTANSKASNNDSTLGENIKPYSSSTTIVPLMLGNLDAIIG 60

Query: 61  FPLAIASIRVRSNPCGRSVGFTKMSIELPATSARSAGGLGPGISPIASSLGQSHAKKLRD 120
           FPL IAS  V S                          LG  +S  ASSLG  HA  L+ 
Sbjct: 61  FPLIIASGYVPS--------------------------LGRCMS--ASSLGLCHAMTLQG 120

Query: 121 SRAFWLLREAVQRFLCEQRRMVLGGFLLHIAPKLCCSATGLVHRRANG 169
                   E    F  E RR+   GF   I P  CC+A    H R NG
Sbjct: 121 LGGPGPANEEAPHFQSEPRRIFHVGFAPKIVPMPCCNAKSPAHPRGNG 140

The following BLAST results are available for this feature:
BLAST of CmaCh04G005930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G005930 vs. TrEMBL
Match NameE-valueIdentityDescription
M5WB17_PRUPE2.4e-1541.07Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013104mg PE=4 SV=1[more]
BLAST of CmaCh04G005930 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G005930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|595849573|ref|XP_007209753.1|3.4e-1541.07hypothetical protein PRUPE_ppa013104mg [Prunus persica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G005930.1CmaCh04G005930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G005930Cucurbita maxima (Rimu)cmacmaB353
CmaCh04G005930Cucumber (Gy14) v1cgycmaB0280
CmaCh04G005930Cucurbita moschata (Rifu)cmacmoB703
CmaCh04G005930Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G005930Wild cucumber (PI 183967)cmacpiB714
CmaCh04G005930Cucumber (Chinese Long) v2cmacuB708
CmaCh04G005930Melon (DHL92) v3.5.1cmameB704
CmaCh04G005930Watermelon (Charleston Gray)cmawcgB675
CmaCh04G005930Watermelon (97103) v1cmawmB685
CmaCh04G005930Cucurbita pepo (Zucchini)cmacpeB717
CmaCh04G005930Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G005930Bottle gourd (USVL1VR-Ls)cmalsiB695
CmaCh04G005930Cucumber (Gy14) v2cgybcmaB541
CmaCh04G005930Melon (DHL92) v3.6.1cmamedB793
CmaCh04G005930Silver-seed gourdcarcmaB0055
CmaCh04G005930Silver-seed gourdcarcmaB0927
CmaCh04G005930Cucumber (Chinese Long) v3cmacucB0841
CmaCh04G005930Watermelon (97103) v2cmawmbB782
CmaCh04G005930Wax gourdcmawgoB0847