CmaCh04G004480 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G004480
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 2289975 .. 2290271 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATGCCATAATTGGTCGAATGGCGGAGAGGCTCTCCTGTTCTTGTCCGCCATAATAATTAATGACCGGTGGAAAAAAAATTCACGACCCCTTTTGGCGTCAACCCTCGTTTTGAACCTTTGATTTTTATTCTTCTTCTTCTTCTTCCCTGAAATTTATGAACTGTACAAGAAATATACGGAACCAGAGCCGAAGCCGCGGAGCGTGCGAAACGGCGAGCCGTCCGGAGAGGAAGAAAAAAGAGCGACGTCGTTTAGGGTCCCGCGAAAAACAACTGGTGCAATAACGCAATAA

mRNA sequence

ATGGGATGCCATAATTGGTCGAATGGCGGAGAGGCTCTCCTGTTCTTGTCCGCCATAATAATTAATGACCGGTGGAAAAAAAATTCACGACCCCTTTTGGCGTCAACCCTCAAATATACGGAACCAGAGCCGAAGCCGCGGAGCGTGCGAAACGGCGAGCCGTCCGGAGAGGAAGAAAAAAGAGCGACGTCGTTTAGGGTCCCGCGAAAAACAACTGGTGCAATAACGCAATAA

Coding sequence (CDS)

ATGGGATGCCATAATTGGTCGAATGGCGGAGAGGCTCTCCTGTTCTTGTCCGCCATAATAATTAATGACCGGTGGAAAAAAAATTCACGACCCCTTTTGGCGTCAACCCTCAAATATACGGAACCAGAGCCGAAGCCGCGGAGCGTGCGAAACGGCGAGCCGTCCGGAGAGGAAGAAAAAAGAGCGACGTCGTTTAGGGTCCCGCGAAAAACAACTGGTGCAATAACGCAATAA

Protein sequence

MGCHNWSNGGEALLFLSAIIINDRWKKNSRPLLASTLKYTEPEPKPRSVRNGEPSGEEEKRATSFRVPRKTTGAITQ
Homology
[Close]
BLAST of CmaCh04G004480 vs. TrEMBL
Match: A0A0A0KWD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000730 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-07
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 1 

Query: 1  MGCHNWSNGGEALLFLSAIIINDR-WKKNSRPLLASTLKYTEPEPKPRSVRNGEPSGEEE 60
          M CHNWSNGGE L FLSAIIINDR +  +S   L    +      + RS+RN EPSGEEE
Sbjct: 1  MRCHNWSNGGEPLTFLSAIIINDRTFHLDSSSSLKFMYRRRRMRSRSRSLRNSEPSGEEE 60

[Close]
BLAST of CmaCh04G004480 vs. NCBI nr
Match: gi|700197594|gb|KGN52752.1| (hypothetical protein Csa_4G000730 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-07
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 1 

Query: 1  MGCHNWSNGGEALLFLSAIIINDR-WKKNSRPLLASTLKYTEPEPKPRSVRNGEPSGEEE 60
          M CHNWSNGGE L FLSAIIINDR +  +S   L    +      + RS+RN EPSGEEE
Sbjct: 1  MRCHNWSNGGEPLTFLSAIIINDRTFHLDSSSSLKFMYRRRRMRSRSRSLRNSEPSGEEE 60

The following BLAST results are available for this feature:
BLAST of CmaCh04G004480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G004480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWD1_CUCSA3.7e-0755.74Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000730 PE=4 SV=1[more]
BLAST of CmaCh04G004480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G004480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197594|gb|KGN52752.1|5.2e-0755.74hypothetical protein Csa_4G000730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G004480.1CmaCh04G004480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G004480Cla97C10G193210Watermelon (97103) v2cmawmbB713
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G004480Silver-seed gourdcarcmaB1027
CmaCh04G004480Cucumber (Chinese Long) v3cmacucB0854
CmaCh04G004480Cucumber (Chinese Long) v3cmacucB0843
CmaCh04G004480Cucumber (Chinese Long) v3cmacucB0914
CmaCh04G004480Cucumber (Chinese Long) v3cmacucB0918
CmaCh04G004480Watermelon (97103) v2cmawmbB744
CmaCh04G004480Watermelon (97103) v2cmawmbB770
CmaCh04G004480Watermelon (97103) v2cmawmbB792
CmaCh04G004480Wax gourdcmawgoB0814
CmaCh04G004480Wax gourdcmawgoB0884
CmaCh04G004480Wax gourdcmawgoB0915
CmaCh04G004480Cucurbita maxima (Rimu)cmacmaB163
CmaCh04G004480Cucurbita maxima (Rimu)cmacmaB351
CmaCh04G004480Cucurbita maxima (Rimu)cmacmaB457
CmaCh04G004480Cucumber (Gy14) v1cgycmaB0232
CmaCh04G004480Cucumber (Gy14) v1cgycmaB0629
CmaCh04G004480Cucumber (Gy14) v1cgycmaB0825
CmaCh04G004480Cucurbita moschata (Rifu)cmacmoB718
CmaCh04G004480Cucurbita moschata (Rifu)cmacmoB678
CmaCh04G004480Cucurbita moschata (Rifu)cmacmoB701
CmaCh04G004480Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G004480Wild cucumber (PI 183967)cmacpiB715
CmaCh04G004480Wild cucumber (PI 183967)cmacpiB786
CmaCh04G004480Cucumber (Chinese Long) v2cmacuB709
CmaCh04G004480Cucumber (Chinese Long) v2cmacuB721
CmaCh04G004480Cucumber (Chinese Long) v2cmacuB775
CmaCh04G004480Cucumber (Chinese Long) v2cmacuB776
CmaCh04G004480Melon (DHL92) v3.5.1cmameB672
CmaCh04G004480Melon (DHL92) v3.5.1cmameB700
CmaCh04G004480Melon (DHL92) v3.5.1cmameB711
CmaCh04G004480Watermelon (Charleston Gray)cmawcgB609
CmaCh04G004480Watermelon (Charleston Gray)cmawcgB643
CmaCh04G004480Watermelon (97103) v1cmawmB653
CmaCh04G004480Watermelon (97103) v1cmawmB725
CmaCh04G004480Cucurbita pepo (Zucchini)cmacpeB715
CmaCh04G004480Cucurbita pepo (Zucchini)cmacpeB719
CmaCh04G004480Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G004480Cucurbita pepo (Zucchini)cmacpeB749
CmaCh04G004480Bottle gourd (USVL1VR-Ls)cmalsiB640
CmaCh04G004480Bottle gourd (USVL1VR-Ls)cmalsiB657
CmaCh04G004480Bottle gourd (USVL1VR-Ls)cmalsiB662
CmaCh04G004480Bottle gourd (USVL1VR-Ls)cmalsiB674
CmaCh04G004480Cucumber (Gy14) v2cgybcmaB543
CmaCh04G004480Cucumber (Gy14) v2cgybcmaB553
CmaCh04G004480Cucumber (Gy14) v2cgybcmaB843
CmaCh04G004480Cucumber (Gy14) v2cgybcmaB964
CmaCh04G004480Melon (DHL92) v3.6.1cmamedB754
CmaCh04G004480Melon (DHL92) v3.6.1cmamedB787
CmaCh04G004480Melon (DHL92) v3.6.1cmamedB789
CmaCh04G004480Melon (DHL92) v3.6.1cmamedB801
CmaCh04G004480Silver-seed gourdcarcmaB0408
CmaCh04G004480Silver-seed gourdcarcmaB0529
CmaCh04G004480Silver-seed gourdcarcmaB0634