CmaCh04G004440 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G004440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 2269979 .. 2271035 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTGTTGGACGACCAGCATAGAGCCTCTATGAGAAATAACAGAGATGAAATGTGTACACTGGCAAAAGCTCAAATGGATCTCAAATTGGCGAAGATGAGGACCATGACATCACAAGAGGCAGCTGCTGTTGCTGCTCGAGCAGTTGCAGAAGCCGAAGCAGCAATAGCAGAGGCCGAAGAGGCTGCAAGGGAAACCGAGGCAGCTGAAGCAGATGCTGCAGCAGCACAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTTCCGAAGATGGTAAAACTGCATAATACGTACTGTTGAAAACTTGAAAATGCATTAATATCTATTTCTTCGTTTCTTAATTTCATGAGTCAAATAATTTTGATCCTTTTCTAATATGATTATACAAGAGGGATGTGACAATTTATAGAATCCACATTATTATCTTTACCATTGAGTTGACTACTTGAAGGGACCATAGTGTAAAATACGGGAAGTAATTCAAGGAACGAAACAACTACGTCGAGTTTTGAATACTAAAAACGAATAATTTTAAATTTGTTAAAACAAAAAGATGATTTTTATGACTGTTTCGAGTTTAACGAACATCTCAGAACTCTATTCTTATATGCTTCTCCTTTTGGTACATCTTAGCAGATGGTTCGAGTTGATGGAAAGCAAGACCTGATTTGGAGGAGTTATGGCGCTGTTCTTAATTTGATCGGACATGTTCTGCATTTGCTATCAGTAGAGCATTATAAGCAACTCCTCGCCCATCATTTTCAACCACTTTTTGGGCAACTCGAGCAACAGGGTCAGACTTGGATATCTAAACAAGGGAAGTTGCCATGGGCTTAGTTAGTTGCATGTAAAAAATGTATATTTCTTGTAGTATAGCAAATCTGTGGGCTTCATCTAATGCTCTTTCTGGTGTTGATCAATTATTACCATTGTTTATTTTGATAGGCTAAGCTTGTCCTCCAACTTTGAAGTTGAAATTAGTGTAAACAAGCTTTTTTTTTATACAATTATTTGTTATTCAACAATAATGACTGGCTGCCAG

mRNA sequence

ATGTTATTGTTGGACGACCAGCATAGAGCCTCTATGAGAAATAACAGAGATGAAATGTGTACACTGGCAAAAGCTCAAATGGATCTCAAATTGGCGAAGATGAGGACCATGACATCACAAGAGGCAGCTGCTGTTGCTGCTCGAGCAGTTGCAGAAGCCGAAGCAGCAATAGCAGAGGCCGAAGAGGCTGCAAGGGAAACCGAGGCAGCTGAAGCAGATGCTGCAGCAGCACAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTTCCGAAGATGATGGTTCGAGTTGATGGAAAGCAAGACCTGATTTGGAGGAGTTATGGCGCTGTTCTTAATTTGATCGGACATGTTCTGCATTTGCTATCAGTAGAGCATTATAAGCAACTCCTCGCCCATCATTTTCAACCACTTTTTGGGCAACTCGAGCAACAGGGTCAGACTTGGATATCTAAACAAGGGAAGTTGCCATGGGCTTAGTTAGTTGCATGTAAAAAATGTATATTTCTTGTAGTATAGCAAATCTGTGGGCTTCATCTAATGCTCTTTCTGGTGTTGATCAATTATTACCATTGTTTATTTTGATAGGCTAAGCTTGTCCTCCAACTTTGAAGTTGAAATTAGTGTAAACAAGCTTTTTTTTTATACAATTATTTGTTATTCAACAATAATGACTGGCTGCCAG

Coding sequence (CDS)

ATGTTATTGTTGGACGACCAGCATAGAGCCTCTATGAGAAATAACAGAGATGAAATGTGTACACTGGCAAAAGCTCAAATGGATCTCAAATTGGCGAAGATGAGGACCATGACATCACAAGAGGCAGCTGCTGTTGCTGCTCGAGCAGTTGCAGAAGCCGAAGCAGCAATAGCAGAGGCCGAAGAGGCTGCAAGGGAAACCGAGGCAGCTGAAGCAGATGCTGCAGCAGCACAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTTCCGAAGATGATGGTTCGAGTTGATGGAAAGCAAGACCTGATTTGGAGGAGTTATGGCGCTGTTCTTAATTTGATCGGACATGTTCTGCATTTGCTATCAGTAGAGCATTATAAGCAACTCCTCGCCCATCATTTTCAACCACTTTTTGGGCAACTCGAGCAACAGGGTCAGACTTGGATATCTAAACAAGGGAAGTTGCCATGGGCTTAG

Protein sequence

MLLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEAEEAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKMMVRVDGKQDLIWRSYGAVLNLIGHVLHLLSVEHYKQLLAHHFQPLFGQLEQQGQTWISKQGKLPWA

Homology

[Close]

BLAST of CmaCh04G004440 vs. Swiss-Prot
Match: TRB1_ARATH (Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-15
Identity = 55/89 (61.80%), Postives = 73/89 (82.02%), Query Frame = 1


Query: 11  SMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEAEEAARETEAA 70
           S + + DE+    ++Q+D ++A+M++M   EAAAVAA+AVAEAEAA+AEAEEAA+E EAA
Sbjct: 211 SPKTDIDEVNFQTRSQIDTEIARMKSMNVHEAAAVAAQAVAEAEAAMAEAEEAAKEAEAA 270

Query: 71  EADAAAAQSFAEAAMKTLKGRNLPKMMVR 100
           EA+A AAQ+FAE A KTLKGRN+ KMM+R
Sbjct: 271 EAEAEAAQAFAEEASKTLKGRNICKMMIR 299

[Close]

BLAST of CmaCh04G004440 vs. Swiss-Prot
Match: SMH6_MAIZE (Single myb histone 6 OS=Zea mays GN=SMH6 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 55/98 (56.12%), Postives = 74/98 (75.51%), Query Frame = 1


Query: 1   MLLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEA 60
           M LL+D  R  ++   D+  TL ++Q+D +LA+M TMT++EA+  AARAVAEAEA +AEA
Sbjct: 201 MPLLEDVQREPVKIWSDDTKTLTRSQVDAELARMATMTAEEASVAAARAVAEAEAIMAEA 260

Query: 61  EEAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKMMV 99
           E AA+E EAAEA+A AAQ+FAEAA  TLK RN  K+++
Sbjct: 261 EAAAKEAEAAEAEAQAAQAFAEAAFLTLKNRNAGKLVI 298

[Close]

BLAST of CmaCh04G004440 vs. Swiss-Prot
Match: SMH5_MAIZE (Single myb histone 5 OS=Zea mays GN=SMH5 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.3e-14
Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = 1


Query: 3   LLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEAEE 62
           LL+D  R  ++   D   TL ++Q+D +L +M TMT + AAA AA AVAEAEA +AEAE 
Sbjct: 192 LLEDVQREPLKLGSDASRTLTRSQVDAELVRMATMTVEAAAAAAAHAVAEAEAIMAEAEA 251

Query: 63  AARETEAAEADAAAAQSFAEAAMKTLKGRNLPKMM 98
           AARE EAAEA+A AAQ+FAEAA+ TLK RN  K++
Sbjct: 252 AAREAEAAEAEARAAQAFAEAAVLTLKNRNAAKLV 286

[Close]

BLAST of CmaCh04G004440 vs. Swiss-Prot
Match: SMH1_MAIZE (Single myb histone 1 OS=Zea mays GN=SMH1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.9e-09
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1


Query: 12  MRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEAEEAARETEAAE 71
           M+   +    L K Q+  +L KM+ MT +EAAA AA+AVAEAE AIAEAEEAAR  EAAE
Sbjct: 210 MKAENNNAKRLTKHQVIAELEKMKGMTKEEAAAFAAKAVAEAEVAIAEAEEAARVAEAAE 269

Query: 72  ADAAAAQSFAEAAMKTLKGRNLPKMMVR 100
            DA AA++F +A   +++ RN   MM+R
Sbjct: 270 NDAEAAKAFLDAVTLSMRNRNAASMMLR 297

[Close]

BLAST of CmaCh04G004440 vs. Swiss-Prot
Match: SMH2_MAIZE (Single myb histone 2 OS=Zea mays GN=SMH2 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 1


Query: 12  MRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEAEEAARETEAAE 71
           M    + +  L K Q+  +L KM+ MT +EAAA AA+AVAEAE A+AEAEEAAR  EAAE
Sbjct: 209 MNTENNNVKRLTKPQVVAELEKMKGMTREEAAAFAAKAVAEAEVAMAEAEEAARVAEAAE 268

Query: 72  ADAAAAQSFAEAAMKTLKGRNLPKMMVR 100
            DA AA++F +A + +++ RN   M++R
Sbjct: 269 NDAEAAKAFLDAVILSMRNRNAASMILR 296

[Close]

BLAST of CmaCh04G004440 vs. TrEMBL
Match: A0A0A0KV07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000700 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.7e-30
Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 1   MLLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEA 60
           MLLL+DQ +AS+R ++D+MC LAKAQ+DL+LAKMRTMTSQEAAA AARAVAEAEAAIAEA
Sbjct: 229 MLLLEDQQKASVRADKDDMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEA 288

Query: 61  EEAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKMMVRV 101
           EEAARE EAAEADA AAQSFAEAAMKTLKGRNLPKMM+RV
Sbjct: 289 EEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 328

[Close]

BLAST of CmaCh04G004440 vs. TrEMBL
Match: A0A067L7W7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16345 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-22
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1


Query: 1   MLLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEA 60
           ML L+ + R S +  RD+   L KAQ+DL+LAKMRTM++QEAAA AARAVAEAEAAIAEA
Sbjct: 201 MLFLEGRQRISPKVERDDFSMLTKAQIDLELAKMRTMSAQEAAAAAARAVAEAEAAIAEA 260

Query: 61  EEAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKMMVR 100
           EEAARE EAAEADA AAQ+FAEAA+KTLKGR  PKMM+R
Sbjct: 261 EEAAREAEAAEADAEAAQAFAEAALKTLKGRTPPKMMIR 299

[Close]

BLAST of CmaCh04G004440 vs. TrEMBL
Match: V5T6Q3_ARAHY (Putative MYB-related protein 23 OS=Arachis hypogaea GN=MYB23 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.0e-22
Identity = 70/97 (72.16%), Postives = 85/97 (87.63%), Query Frame = 1


Query: 2   LLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEAE 61
           LL+D + +AS+R +++E   L K Q+DL+LAK+R+M +QEAAAVAARAVAEAEAAIAEAE
Sbjct: 201 LLMDGRQKASLRGDKEETNVLTKFQVDLELAKIRSMFAQEAAAVAARAVAEAEAAIAEAE 260

Query: 62  EAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKMMV 99
           EAARE EAAEADA AAQ+FA+AAMKTLKGRN PKMM+
Sbjct: 261 EAAREAEAAEADAEAAQAFADAAMKTLKGRNTPKMMI 297

[Close]

BLAST of CmaCh04G004440 vs. TrEMBL
Match: F2QKY1_ROSHC (Putative MYB transcription factor OS=Rosa hybrid cultivar GN=myb10 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 72/99 (72.73%), Postives = 82/99 (82.83%), Query Frame = 1


Query: 1   MLLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEA 60
           M L + + RAS + ++D+   L K Q+DL+LAKMRTMTSQEAAA AARAVAEAEAAIAEA
Sbjct: 204 MFLFEGRQRASPKFDKDDGTMLMKTQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEA 263

Query: 61  EEAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKMMVR 100
           EEAARE EAAEADA AAQ+FA+AAMKTLKGRN  KMM R
Sbjct: 264 EEAAREAEAAEADAEAAQAFADAAMKTLKGRNPAKMMSR 302

[Close]

BLAST of CmaCh04G004440 vs. TrEMBL
Match: B9T2F8_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_0835000 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 71/109 (65.14%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 1   MLLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEA 60
           ML L+ +HR S +  RD+   L K+Q+D++LAKMRTMT+QEAA  AARAVAEAEAAIAEA
Sbjct: 200 MLFLEGRHRISPKVERDDFNMLTKSQIDVELAKMRTMTAQEAAIAAARAVAEAEAAIAEA 259

Query: 61  EEAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKMMVRVDGKQDLIWR 110
           EEAA E EAAEADA AAQ+FAEAAMKTLKG+++PKM+     K+ +IW+
Sbjct: 260 EEAAIEAEAAEADAEAAQAFAEAAMKTLKGKHMPKMVNL--NKEFIIWK 306

[Close]

BLAST of CmaCh04G004440 vs. TAIR10
Match: AT1G49950.3 (AT1G49950.3 telomere repeat binding factor 1)

HSP 1 Score: 84.0 bits (206), Expect = 9.6e-17
Identity = 55/89 (61.80%), Postives = 73/89 (82.02%), Query Frame = 1


Query: 11  SMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEAEEAARETEAA 70
           S + + DE+    ++Q+D ++A+M++M   EAAAVAA+AVAEAEAA+AEAEEAA+E EAA
Sbjct: 211 SPKTDIDEVNFQTRSQIDTEIARMKSMNVHEAAAVAAQAVAEAEAAMAEAEEAAKEAEAA 270

Query: 71  EADAAAAQSFAEAAMKTLKGRNLPKMMVR 100
           EA+A AAQ+FAE A KTLKGRN+ KMM+R
Sbjct: 271 EAEAEAAQAFAEEASKTLKGRNICKMMIR 299

[Close]

BLAST of CmaCh04G004440 vs. TAIR10
Match: AT5G67580.1 (AT5G67580.1 Homeodomain-like/winged-helix DNA-binding family protein)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-09
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 21  TLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEAEEAARETEAAEADAAAAQSF 80
           +L K ++D +L  ++ MT+QEAA  AARAVAEAE AI EAE+AA+E E AEA+A AAQ F
Sbjct: 223 SLTKFRVDGELYMIKGMTAQEAAEAAARAVAEAEFAITEAEQAAKEAERAEAEAEAAQIF 282

Query: 81  AEAAMKTLKGR 92
           A+AAMK LK R
Sbjct: 283 AKAAMKALKFR 293

[Close]

BLAST of CmaCh04G004440 vs. TAIR10
Match: AT3G49850.1 (AT3G49850.1 telomere repeat binding factor 3)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-07
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1


Query: 2   LLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEAE 61
           LLL+     + +   + +  L K+Q+  ++  M  MT +EAAA AARAVAEAE A+AEAE
Sbjct: 201 LLLEGNKENTPKPEENGVKNLTKSQVGGEVMIMG-MTEKEAAAAAARAVAEAEFAMAEAE 260

Query: 62  EAARETEAAEADAAAAQSFAEAAMKTLKGR 92
           EAARE + AEA+A AA  FA+AAMK +K R
Sbjct: 261 EAAREADKAEAEAEAAHIFAKAAMKAVKYR 289

[Close]

BLAST of CmaCh04G004440 vs. NCBI nr
Match: gi|659108820|ref|XP_008454403.1| (PREDICTED: telomere repeat-binding factor 1 isoform X2 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 86/100 (86.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 1   MLLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEA 60
           MLLL+DQ RA++R ++DEMC LAKAQ+DL+LAKMRTMTSQEAAA AARAVAEAEAAIAEA
Sbjct: 229 MLLLEDQQRATVRADKDEMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEA 288

Query: 61  EEAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKMMVRV 101
           EEAARE EAAEADA AAQSFAEAAMKTLKGRNLPKMM+RV
Sbjct: 289 EEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 328

[Close]

BLAST of CmaCh04G004440 vs. NCBI nr
Match: gi|659108824|ref|XP_008454405.1| (PREDICTED: telomere repeat-binding factor 1 isoform X4 [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 86/100 (86.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 1   MLLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEA 60
           MLLL+DQ RA++R ++DEMC LAKAQ+DL+LAKMRTMTSQEAAA AARAVAEAEAAIAEA
Sbjct: 225 MLLLEDQQRATVRADKDEMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEA 284

Query: 61  EEAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKMMVRV 101
           EEAARE EAAEADA AAQSFAEAAMKTLKGRNLPKMM+RV
Sbjct: 285 EEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 324

[Close]

BLAST of CmaCh04G004440 vs. NCBI nr
Match: gi|778689158|ref|XP_011652911.1| (PREDICTED: telomere repeat-binding factor 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-30
Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 1   MLLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEA 60
           MLLL+DQ +AS+R ++D+MC LAKAQ+DL+LAKMRTMTSQEAAA AARAVAEAEAAIAEA
Sbjct: 229 MLLLEDQQKASVRADKDDMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEA 288

Query: 61  EEAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKMMVRV 101
           EEAARE EAAEADA AAQSFAEAAMKTLKGRNLPKMM+RV
Sbjct: 289 EEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 328

[Close]

BLAST of CmaCh04G004440 vs. NCBI nr
Match: gi|659108826|ref|XP_008454406.1| (PREDICTED: telomere repeat-binding factor 1 isoform X5 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 2.7e-29
Identity = 86/101 (85.15%), Postives = 94/101 (93.07%), Query Frame = 1


Query: 1   MLLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEA 60
           MLLL+DQ RA++R ++DEMC LAKAQ+DL+LAKMRTMTSQEAAA AARAVAEAEAAIAEA
Sbjct: 174 MLLLEDQQRATVRADKDEMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEA 233

Query: 61  EEAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKM-MVRV 101
           EEAARE EAAEADA AAQSFAEAAMKTLKGRNLPKM M+RV
Sbjct: 234 EEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMQMIRV 274

[Close]

BLAST of CmaCh04G004440 vs. NCBI nr
Match: gi|659108822|ref|XP_008454404.1| (PREDICTED: telomere repeat-binding factor 1 isoform X3 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 2.7e-29
Identity = 86/101 (85.15%), Postives = 94/101 (93.07%), Query Frame = 1


Query: 1   MLLLDDQHRASMRNNRDEMCTLAKAQMDLKLAKMRTMTSQEAAAVAARAVAEAEAAIAEA 60
           MLLL+DQ RA++R ++DEMC LAKAQ+DL+LAKMRTMTSQEAAA AARAVAEAEAAIAEA
Sbjct: 225 MLLLEDQQRATVRADKDEMCILAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEA 284

Query: 61  EEAARETEAAEADAAAAQSFAEAAMKTLKGRNLPKM-MVRV 101
           EEAARE EAAEADA AAQSFAEAAMKTLKGRNLPKM M+RV
Sbjct: 285 EEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMQMIRV 325

The following BLAST results are available for this feature:

BLAST of CmaCh04G004440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRB1_ARATH	1.7e-15	61.80	Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1	[more]
SMH6_MAIZE	1.1e-14	56.12	Single myb histone 6 OS=Zea mays GN=SMH6 PE=2 SV=1	[more]
SMH5_MAIZE	9.3e-14	56.84	Single myb histone 5 OS=Zea mays GN=SMH5 PE=2 SV=1	[more]
SMH1_MAIZE	6.9e-09	52.27	Single myb histone 1 OS=Zea mays GN=SMH1 PE=2 SV=1	[more]
SMH2_MAIZE	1.5e-08	50.00	Single myb histone 2 OS=Zea mays GN=SMH2 PE=2 SV=1	[more]

BLAST of CmaCh04G004440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV07_CUCSA	1.7e-30	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000700 PE=3 SV=1	[more]
A0A067L7W7_JATCU	2.9e-22	72.73	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16345 PE=3 SV=1	[more]
V5T6Q3_ARAHY	5.0e-22	72.16	Putative MYB-related protein 23 OS=Arachis hypogaea GN=MYB23 PE=3 SV=1	[more]
F2QKY1_ROSHC	3.2e-21	72.73	Putative MYB transcription factor OS=Rosa hybrid cultivar GN=myb10 PE=2 SV=1	[more]
B9T2F8_RICCO	3.2e-21	65.14	DNA binding protein, putative OS=Ricinus communis GN=RCOM_0835000 PE=3 SV=1	[more]

BLAST of CmaCh04G004440 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49950.3	9.6e-17	61.80	telomere repeat binding factor 1	[more]
AT5G67580.1	4.3e-09	61.97	Homeodomain-like/winged-helix DNA-binding family protein	[more]
AT3G49850.1	3.1e-07	51.11	telomere repeat binding factor 3	[more]

BLAST of CmaCh04G004440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108820\|ref\|XP_008454403.1\|	1.1e-30	86.00	PREDICTED: telomere repeat-binding factor 1 isoform X2 [Cucumis melo]	[more]
gi\|659108824\|ref\|XP_008454405.1\|	1.1e-30	86.00	PREDICTED: telomere repeat-binding factor 1 isoform X4 [Cucumis melo]	[more]
gi\|778689158\|ref\|XP_011652911.1\|	2.4e-30	85.00	PREDICTED: telomere repeat-binding factor 1 isoform X2 [Cucumis sativus]	[more]
gi\|659108826\|ref\|XP_008454406.1\|	2.7e-29	85.15	PREDICTED: telomere repeat-binding factor 1 isoform X5 [Cucumis melo]	[more]
gi\|659108822\|ref\|XP_008454404.1\|	2.7e-29	85.15	PREDICTED: telomere repeat-binding factor 1 isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G004440.1	CmaCh04G004440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 43..77 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G004440	Wax gourd	cmawgoB0814
CmaCh04G004440	Wax gourd	cmawgoB0884
CmaCh04G004440	Wax gourd	cmawgoB0915
CmaCh04G004440	Cucurbita maxima (Rimu)	cmacmaB163
CmaCh04G004440	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh04G004440	Cucumber (Gy14) v1	cgycmaB0232
CmaCh04G004440	Cucumber (Gy14) v1	cgycmaB0629
CmaCh04G004440	Cucumber (Gy14) v1	cgycmaB0825
CmaCh04G004440	Cucurbita moschata (Rifu)	cmacmoB678
CmaCh04G004440	Cucurbita moschata (Rifu)	cmacmoB701
CmaCh04G004440	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G004440	Wild cucumber (PI 183967)	cmacpiB715
CmaCh04G004440	Wild cucumber (PI 183967)	cmacpiB786
CmaCh04G004440	Cucumber (Chinese Long) v2	cmacuB709
CmaCh04G004440	Cucumber (Chinese Long) v2	cmacuB721
CmaCh04G004440	Cucumber (Chinese Long) v2	cmacuB775
CmaCh04G004440	Cucumber (Chinese Long) v2	cmacuB776
CmaCh04G004440	Melon (DHL92) v3.5.1	cmameB672
CmaCh04G004440	Melon (DHL92) v3.5.1	cmameB700
CmaCh04G004440	Melon (DHL92) v3.5.1	cmameB711
CmaCh04G004440	Watermelon (Charleston Gray)	cmawcgB609
CmaCh04G004440	Watermelon (Charleston Gray)	cmawcgB643
CmaCh04G004440	Watermelon (97103) v1	cmawmB653
CmaCh04G004440	Cucurbita pepo (Zucchini)	cmacpeB715
CmaCh04G004440	Cucurbita pepo (Zucchini)	cmacpeB719
CmaCh04G004440	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G004440	Cucurbita pepo (Zucchini)	cmacpeB749
CmaCh04G004440	Bottle gourd (USVL1VR-Ls)	cmalsiB640
CmaCh04G004440	Bottle gourd (USVL1VR-Ls)	cmalsiB657
CmaCh04G004440	Bottle gourd (USVL1VR-Ls)	cmalsiB662
CmaCh04G004440	Bottle gourd (USVL1VR-Ls)	cmalsiB674
CmaCh04G004440	Cucumber (Gy14) v2	cgybcmaB543
CmaCh04G004440	Cucumber (Gy14) v2	cgybcmaB553
CmaCh04G004440	Cucumber (Gy14) v2	cgybcmaB843
CmaCh04G004440	Cucumber (Gy14) v2	cgybcmaB964
CmaCh04G004440	Melon (DHL92) v3.6.1	cmamedB754
CmaCh04G004440	Melon (DHL92) v3.6.1	cmamedB787
CmaCh04G004440	Melon (DHL92) v3.6.1	cmamedB789
CmaCh04G004440	Melon (DHL92) v3.6.1	cmamedB801
CmaCh04G004440	Silver-seed gourd	carcmaB0408
CmaCh04G004440	Silver-seed gourd	carcmaB0529
CmaCh04G004440	Silver-seed gourd	carcmaB0634
CmaCh04G004440	Silver-seed gourd	carcmaB1027
CmaCh04G004440	Cucumber (Chinese Long) v3	cmacucB0854
CmaCh04G004440	Cucumber (Chinese Long) v3	cmacucB0843
CmaCh04G004440	Cucumber (Chinese Long) v3	cmacucB0914
CmaCh04G004440	Cucumber (Chinese Long) v3	cmacucB0918
CmaCh04G004440	Watermelon (97103) v2	cmawmbB713
CmaCh04G004440	Watermelon (97103) v2	cmawmbB744
CmaCh04G004440	Watermelon (97103) v2	cmawmbB770
CmaCh04G004440	Watermelon (97103) v2	cmawmbB792