CmaCh04G003590 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G003590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 1791129 .. 1791422 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTTGGAGTATCCACTTCCATGGACATTGCAATCTCCATTCCGTCGCTTCATCTCTCCTCCTCTCCCCTTTCCTTCAAGTCCAGTGCTACGATCTCACTTCAATCTCCTAGATTCCGGAATGCGTATTTCGATAGCTTATTTTTCGGTTCCCGCTGGACTGCGCGAAGGGTCACCACTGTCGAAACACGCCAGTGTTCTTCCAAAGCCACGGATGATGATTTCATCATCGAAGACGTTCCTCACTTGGCTGACTTTCTTCCCGACTTACCGGTACTGCTCGAACGTTAA

mRNA sequence

ATGAATTTTGGAGTATCCACTTCCATGGACATTGCAATCTCCATTCCGTCGCTTCATCTCTCCTCCTCTCCCCTTTCCTTCAAGTCCAGTGCTACGATCTCACTTCAATCTCCTAGATTCCGGAATGCGTATTTCGATAGCTTATTTTTCGGTTCCCGCTGGACTGCGCGAAGGGTCACCACTGTCGAAACACGCCAGTGTTCTTCCAAAGCCACGGATGATGATTTCATCATCGAAGACGTTCCTCACTTGGCTGACTTTCTTCCCGACTTACCGGTACTGCTCGAACGTTAA

Coding sequence (CDS)

ATGAATTTTGGAGTATCCACTTCCATGGACATTGCAATCTCCATTCCGTCGCTTCATCTCTCCTCCTCTCCCCTTTCCTTCAAGTCCAGTGCTACGATCTCACTTCAATCTCCTAGATTCCGGAATGCGTATTTCGATAGCTTATTTTTCGGTTCCCGCTGGACTGCGCGAAGGGTCACCACTGTCGAAACACGCCAGTGTTCTTCCAAAGCCACGGATGATGATTTCATCATCGAAGACGTTCCTCACTTGGCTGACTTTCTTCCCGACTTACCGGTACTGCTCGAACGTTAA

Protein sequence

MNFGVSTSMDIAISIPSLHLSSSPLSFKSSATISLQSPRFRNAYFDSLFFGSRWTARRVTTVETRQCSSKATDDDFIIEDVPHLADFLPDLPVLLER

Homology

[Close]

BLAST of CmaCh04G003590 vs. TrEMBL
Match: A0A0A0KZ72_CUCSA (ATP-dependent 6-phosphofructokinase OS=Cucumis sativus GN=PFK PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.1e-20
Identity = 61/93 (65.59%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 1  MNFGVSTSMDIA-ISIPSLHLSSSPLSFKSSATISLQSPRFRNAYFDSLFFGSRWTARRV 60
          MNFGVSTSMD+A ISIPSLH S      KSSA ISLQ+PR RNA   SLF G R    R+
Sbjct: 1  MNFGVSTSMDVAAISIPSLHFS-----IKSSAAISLQAPRSRNACSVSLFSGFRRFGLRI 60

Query: 61 TTVETRQCSSKATDDDFIIEDVPHLADFLPDLP 93
           +V+  Q SS+ TDDDFIIEDVPHL DFLP LP
Sbjct: 61 ISVKAEQASSRVTDDDFIIEDVPHLTDFLPHLP 88

[Close]

BLAST of CmaCh04G003590 vs. NCBI nr
Match: gi|449458333|ref|XP_004146902.1| (PREDICTED: ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-19
Identity = 61/93 (65.59%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 1  MNFGVSTSMDIA-ISIPSLHLSSSPLSFKSSATISLQSPRFRNAYFDSLFFGSRWTARRV 60
          MNFGVSTSMD+A ISIPSLH S      KSSA ISLQ+PR RNA   SLF G R    R+
Sbjct: 1  MNFGVSTSMDVAAISIPSLHFS-----IKSSAAISLQAPRSRNACSVSLFSGFRRFGLRI 60

Query: 61 TTVETRQCSSKATDDDFIIEDVPHLADFLPDLP 93
           +V+  Q SS+ TDDDFIIEDVPHL DFLP LP
Sbjct: 61 ISVKAEQASSRVTDDDFIIEDVPHLTDFLPHLP 88

[Close]

BLAST of CmaCh04G003590 vs. NCBI nr
Match: gi|659107814|ref|XP_008453872.1| (PREDICTED: 6-phosphofructokinase 4, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 9.8e-19
Identity = 59/93 (63.44%), Postives = 66/93 (70.97%), Query Frame = 1


Query: 1  MNFGVSTSMDIAI-SIPSLHLSSSPLSFKSSATISLQSPRFRNAYFDSLFFGSRWTARRV 60
          MNFGVS+SMD+A  SIPSLH S     FKSSA I LQ+PR RN    SLF G R    R+
Sbjct: 1  MNFGVSSSMDVAATSIPSLHFS-----FKSSAAILLQAPRCRNVCSVSLFSGFRRFGLRI 60

Query: 61 TTVETRQCSSKATDDDFIIEDVPHLADFLPDLP 93
           +V+  Q SS+ TDDDFIIEDVPHL DFLPDLP
Sbjct: 61 ISVKAEQYSSRVTDDDFIIEDVPHLTDFLPDLP 88

The following BLAST results are available for this feature:

BLAST of CmaCh04G003590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G003590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ72_CUCSA	8.1e-20	65.59	ATP-dependent 6-phosphofructokinase OS=Cucumis sativus GN=PFK PE=3 SV=1	[more]

BLAST of CmaCh04G003590 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G003590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458333\|ref\|XP_004146902.1\|	1.2e-19	65.59	PREDICTED: ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1 [Cucu...	[more]
gi\|659107814\|ref\|XP_008453872.1\|	9.8e-19	63.44	PREDICTED: 6-phosphofructokinase 4, chloroplastic isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0006002	fructose 6-phosphate metabolic process
biological_process	GO:0061615	glycolytic process through fructose-6-phosphate
biological_process	GO:0006000	fructose metabolic process
biological_process	GO:0006012	galactose metabolic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006013	mannose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005945	6-phosphofructokinase complex
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003872	6-phosphofructokinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G003590.1	CmaCh04G003590.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G003590	CmoCh04G003780	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G003590	Cp4.1LG01g03500	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G003590	MELO3C017646.2	Melon (DHL92) v3.6.1	cmamedB791
CmaCh04G003590	CsaV3_4G004200	Cucumber (Chinese Long) v3	cmacucB0842
CmaCh04G003590	Bhi01G002007	Wax gourd	cmawgoB0854
CmaCh04G003590	CsGy4G004050	Cucumber (Gy14) v2	cgybcmaB542
CmaCh04G003590	Carg08034	Silver-seed gourd	carcmaB0529

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G003590	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh04G003590	Cucumber (Gy14) v1	cgycmaB0203
CmaCh04G003590	Cucurbita moschata (Rifu)	cmacmoB701
CmaCh04G003590	Wild cucumber (PI 183967)	cmacpiB716
CmaCh04G003590	Wild cucumber (PI 183967)	cmacpiB754
CmaCh04G003590	Cucumber (Chinese Long) v2	cmacuB710
CmaCh04G003590	Cucumber (Chinese Long) v2	cmacuB745
CmaCh04G003590	Melon (DHL92) v3.5.1	cmameB702
CmaCh04G003590	Watermelon (Charleston Gray)	cmawcgB637
CmaCh04G003590	Watermelon (Charleston Gray)	cmawcgB669
CmaCh04G003590	Watermelon (97103) v1	cmawmB693
CmaCh04G003590	Cucurbita pepo (Zucchini)	cmacpeB715
CmaCh04G003590	Bottle gourd (USVL1VR-Ls)	cmalsiB625
CmaCh04G003590	Bottle gourd (USVL1VR-Ls)	cmalsiB696
CmaCh04G003590	Cucumber (Gy14) v2	cgybcmaB671
CmaCh04G003590	Silver-seed gourd	carcmaB1209
CmaCh04G003590	Cucumber (Chinese Long) v3	cmacucB0882
CmaCh04G003590	Watermelon (97103) v2	cmawmbB707
CmaCh04G003590	Watermelon (97103) v2	cmawmbB775