CmaCh04G003080 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G003080
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPyruvate dehydrogenase E1 component subunit alpha
LocationCma_Chr04 : 1527563 .. 1528239 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCTGCAATCACCAAGAAGGACGCCATTATTACCGCTTATAGGGATCACTGTACCTTCCTCCGCCGTGGGGGAACCCTTCTGGAGGCATTCGCCGAGCTCATGGGCCGCCAGGCTGGGTGCTCCAAAGGAAAAGGAGGTTCGATGCATTTCTATAAGAAGGACGCCGGATTCTATGGTGGTCATGATATTGTGGGGGCTCAGGAACCTTTAGGATGTGGTTTGGCTTTTGCTCATAAGTACTCGAAGGACGGGACCGTGACCTTTGTTCTTTATGGCGACGGTGCAGCAAATCAGGGTCAGTTGTTTGAGGCGCTCAATATATCCGCGCTTTGGGATTTGCCTGTGATTTTCGTCAGTGAGAACAATCATTGTGAGTAGTTTAGACTTTTCGTTGGTTTCTGAGAATAATCTGTGCTTGTGCTTCAATACCTTTTACGTTTTTCATAATTTATAGTCTGCCTTTCAACAGCGTATTTAAAATTATTGATAGTTTATAAATTTTTGTGGGCAATACAATCTGCATTAAGCATAATGGGATCAGTATAGTTTATAACGTTAGCTTGATGAATAAACACAGATTGATCAATGAGCTGATATTAATTGTCTTTCGTTGATACACAGATGGTCTGGGAACTGGAGTGGAGAGCATCCAAAAGTCCTGCCTACTATAA

mRNA sequence

ATGGAGGCTGCAATCACCAAGAAGGACGCCATTATTACCGCTTATAGGGATCACTGTACCTTCCTCCGCCGTGGGGGAACCCTTCTGGAGGCATTCGCCGAGCTCATGGGCCGCCAGGCTGGGTGCTCCAAAGGAAAAGGAGGTTCGATGCATTTCTATAAGAAGGACGCCGGATTCTATGGTGGTCATGATATTGTGGGGGCTCAGGAACCTTTAGGATGTGGTTTGGCTTTTGCTCATAAGTACTCGAAGGACGGGACCGTGACCTTTGTTCTTTATGGCGACGGTGCAGCAAATCAGGGTCAGTTGTTTGAGGCGCTCAATATATCCGCGCTTTGGGATTTGCCTGTGATTTTCGTCAGTGAGAACAATCATTATGGTCTGGGAACTGGAGTGGAGAGCATCCAAAAGTCCTGCCTACTATAA

Coding sequence (CDS)

ATGGAGGCTGCAATCACCAAGAAGGACGCCATTATTACCGCTTATAGGGATCACTGTACCTTCCTCCGCCGTGGGGGAACCCTTCTGGAGGCATTCGCCGAGCTCATGGGCCGCCAGGCTGGGTGCTCCAAAGGAAAAGGAGGTTCGATGCATTTCTATAAGAAGGACGCCGGATTCTATGGTGGTCATGATATTGTGGGGGCTCAGGAACCTTTAGGATGTGGTTTGGCTTTTGCTCATAAGTACTCGAAGGACGGGACCGTGACCTTTGTTCTTTATGGCGACGGTGCAGCAAATCAGGGTCAGTTGTTTGAGGCGCTCAATATATCCGCGCTTTGGGATTTGCCTGTGATTTTCGTCAGTGAGAACAATCATTATGGTCTGGGAACTGGAGTGGAGAGCATCCAAAAGTCCTGCCTACTATAA

Protein sequence

MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFYGGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFVSENNHYGLGTGVESIQKSCLL
Homology
[Close]
BLAST of CmaCh04G003080 vs. Swiss-Prot
Match: ODPA2_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2)

HSP 1 Score: 235.0 bits (598), Expect = 5.2e-61
Identity = 110/138 (79.71%), Postives = 118/138 (85.51%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKDAIIT+YRDHCTF+ RGG L++AF+ELMGR+ GCS GKGGSMHFYKKDA FY
Sbjct: 106 MEAAITKKDAIITSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFY 165

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCGLAFA KY+KD  VTF LYGDGAANQGQLFEALNISALWDLP I V
Sbjct: 166 GGHGIVGAQIPLGCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILV 225

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 226 CENNHYGMGTATWRSAKS 243

[Close]
BLAST of CmaCh04G003080 vs. Swiss-Prot
Match: ODPA_PEA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-60
Identity = 110/138 (79.71%), Postives = 115/138 (83.33%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEA  TKKD IITAYRDHCTFL RGGTLL  +AELMGR+ GCSKGKGGSMHFYKKD+GFY
Sbjct: 110 MEAGTTKKDCIITAYRDHCTFLGRGGTLLRVYAELMGRRDGCSKGKGGSMHFYKKDSGFY 169

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCGLAF  KY KD +VTF LYGDGAANQGQLFEALNISALWDLP I V
Sbjct: 170 GGHGIVGAQVPLGCGLAFGQKYLKDESVTFALYGDGAANQGQLFEALNISALWDLPAILV 229

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 230 CENNHYGMGTATWRSAKS 247

[Close]
BLAST of CmaCh04G003080 vs. Swiss-Prot
Match: ODPA1_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=E1 ALPHA PE=2 SV=2)

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-60
Identity = 110/138 (79.71%), Postives = 118/138 (85.51%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKDAIITAYRDHC FL RGG+L E F+ELMGRQAGCSKGKGGSMHFYKK++ FY
Sbjct: 102 MEAAITKKDAIITAYRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFY 161

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCG+AFA KY+K+  VTF LYGDGAANQGQLFEALNISALWDLP I V
Sbjct: 162 GGHGIVGAQVPLGCGIAFAQKYNKEEAVTFALYGDGAANQGQLFEALNISALWDLPAILV 221

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 222 CENNHYGMGTAEWRAAKS 239

[Close]
BLAST of CmaCh04G003080 vs. Swiss-Prot
Match: ODPA1_ORYSJ (Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0739600 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.4e-60
Identity = 109/138 (78.99%), Postives = 116/138 (84.06%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAIT+ D+IITAYRDHCT+L RGG L+ AFAELMGRQAGCS+GKGGSMHFYKKDA FY
Sbjct: 103 MEAAITRSDSIITAYRDHCTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHFYKKDANFY 162

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCGLAFA KY K+ T TF LYGDGAANQGQLFEALNISALW LP I V
Sbjct: 163 GGHGIVGAQVPLGCGLAFAQKYRKEETATFALYGDGAANQGQLFEALNISALWKLPAILV 222

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 223 CENNHYGMGTAEWRAAKS 240

[Close]
BLAST of CmaCh04G003080 vs. Swiss-Prot
Match: ODPA_SOLTU (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.9e-59
Identity = 107/138 (77.54%), Postives = 117/138 (84.78%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKD IITAYRDHC FL RGGTL+EAFAELMGR+ GCS+GKGGSMHFYKK++GFY
Sbjct: 104 MEAAITKKDCIITAYRDHCIFLGRGGTLVEAFAELMGRRDGCSRGKGGSMHFYKKESGFY 163

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLG GLAFA KY K+  VTF +YGDGAANQGQLFEALN++ALWDLP I V
Sbjct: 164 GGHGIVGAQVPLGIGLAFAQKYKKEDYVTFAMYGDGAANQGQLFEALNMAALWDLPAILV 223

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 224 CENNHYGMGTAEWRAAKS 241

[Close]
BLAST of CmaCh04G003080 vs. TrEMBL
Match: A0A0A0KQD6_CUCSA (Pyruvate dehydrogenase E1 component subunit alpha OS=Cucumis sativus GN=Csa_5G603950 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 4.6e-64
Identity = 120/138 (86.96%), Postives = 124/138 (89.86%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKDAIITAYRDHC FL RGGTLL++FAELMGRQAGCSKGKGGSMHFYKKDAGFY
Sbjct: 98  MEAAITKKDAIITAYRDHCIFLGRGGTLLQSFAELMGRQAGCSKGKGGSMHFYKKDAGFY 157

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCGLAFA KYSK+GTVTF LYGDGAANQGQLFEALNISALWDLPVI V
Sbjct: 158 GGHGIVGAQVPLGCGLAFAQKYSKEGTVTFALYGDGAANQGQLFEALNISALWDLPVILV 217

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 218 CENNHYGMGTAEWRAAKS 235

[Close]
BLAST of CmaCh04G003080 vs. TrEMBL
Match: A0A0A0KE28_CUCSA (Pyruvate dehydrogenase E1 component subunit alpha OS=Cucumis sativus GN=Csa_6G404280 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-63
Identity = 119/138 (86.23%), Postives = 123/138 (89.13%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKDAIITAYRDHCTFL RGGTLLE F+ELMGRQAGCS+GKGGSMHFYKKDAGFY
Sbjct: 112 MEAAITKKDAIITAYRDHCTFLGRGGTLLEVFSELMGRQAGCSRGKGGSMHFYKKDAGFY 171

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCG+AFA KYSKD TVTF LYGDGAANQGQLFEALNISALWDLPVI V
Sbjct: 172 GGHGIVGAQVPLGCGVAFAQKYSKDETVTFALYGDGAANQGQLFEALNISALWDLPVILV 231

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 232 CENNHYGMGTAEWRAAKS 249

[Close]
BLAST of CmaCh04G003080 vs. TrEMBL
Match: A0A0D2SDF0_GOSRA (Pyruvate dehydrogenase E1 component subunit alpha OS=Gossypium raimondii GN=B456_009G345400 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.5e-62
Identity = 117/138 (84.78%), Postives = 120/138 (86.96%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKD IITAYRDHCTF+ RGGTLLE FAELMGRQAGCSKGKGGSMHFYKKD+ FY
Sbjct: 107 MEAAITKKDCIITAYRDHCTFVSRGGTLLEVFAELMGRQAGCSKGKGGSMHFYKKDSNFY 166

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCGLAFA KYSKD TVTF LYGDGAANQGQLFEALNISALWDLP I V
Sbjct: 167 GGHGIVGAQVPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNISALWDLPAILV 226

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 227 CENNHYGMGTAEWRAAKS 244

[Close]
BLAST of CmaCh04G003080 vs. TrEMBL
Match: A0A0B0MJI0_GOSAR (Pyruvate dehydrogenase E1 component subunit alpha OS=Gossypium arboreum GN=F383_03127 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.5e-62
Identity = 117/138 (84.78%), Postives = 120/138 (86.96%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKD IITAYRDHCTF+ RGGTLLE FAELMGRQAGCSKGKGGSMHFYKKD+ FY
Sbjct: 107 MEAAITKKDCIITAYRDHCTFVSRGGTLLEVFAELMGRQAGCSKGKGGSMHFYKKDSNFY 166

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCGLAFA KYSKD TVTF LYGDGAANQGQLFEALNISALWDLP I V
Sbjct: 167 GGHGIVGAQVPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNISALWDLPAILV 226

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 227 CENNHYGMGTAEWRAAKS 244

[Close]
BLAST of CmaCh04G003080 vs. TrEMBL
Match: D2D323_GOSHI (Pyruvate dehydrogenase E1 component subunit alpha OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.5e-62
Identity = 117/138 (84.78%), Postives = 120/138 (86.96%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKD IITAYRDHCTF+ RGGTLLE FAELMGRQAGCSKGKGGSMHFYKKD+ FY
Sbjct: 107 MEAAITKKDCIITAYRDHCTFVSRGGTLLEVFAELMGRQAGCSKGKGGSMHFYKKDSNFY 166

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCGLAFA KYSKD TVTF LYGDGAANQGQLFEALNISALWDLP I V
Sbjct: 167 GGHGIVGAQVPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNISALWDLPAILV 226

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 227 CENNHYGMGTAEWRAAKS 244

[Close]
BLAST of CmaCh04G003080 vs. TAIR10
Match: AT1G24180.1 (AT1G24180.1 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein)

HSP 1 Score: 235.0 bits (598), Expect = 2.9e-62
Identity = 110/138 (79.71%), Postives = 118/138 (85.51%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKDAIIT+YRDHCTF+ RGG L++AF+ELMGR+ GCS GKGGSMHFYKKDA FY
Sbjct: 106 MEAAITKKDAIITSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFY 165

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCGLAFA KY+KD  VTF LYGDGAANQGQLFEALNISALWDLP I V
Sbjct: 166 GGHGIVGAQIPLGCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILV 225

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 226 CENNHYGMGTATWRSAKS 243

[Close]
BLAST of CmaCh04G003080 vs. TAIR10
Match: AT1G59900.1 (AT1G59900.1 pyruvate dehydrogenase complex E1 alpha subunit)

HSP 1 Score: 233.8 bits (595), Expect = 6.5e-62
Identity = 110/138 (79.71%), Postives = 118/138 (85.51%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKDAIITAYRDHC FL RGG+L E F+ELMGRQAGCSKGKGGSMHFYKK++ FY
Sbjct: 102 MEAAITKKDAIITAYRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFY 161

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCG+AFA KY+K+  VTF LYGDGAANQGQLFEALNISALWDLP I V
Sbjct: 162 GGHGIVGAQVPLGCGIAFAQKYNKEEAVTFALYGDGAANQGQLFEALNISALWDLPAILV 221

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 222 CENNHYGMGTAEWRAAKS 239

[Close]
BLAST of CmaCh04G003080 vs. TAIR10
Match: AT1G01090.1 (AT1G01090.1 pyruvate dehydrogenase E1 alpha)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-26
Identity = 53/131 (40.46%), Postives = 78/131 (59.54%), Query Frame = 1 

Query: 5   ITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFYGGHD 64
           +TK D++++ YRDH   L +G +     +EL G+  GC +G+GGSMH + K+    GG  
Sbjct: 131 LTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFA 190

Query: 65  IVGAQEPLGCGLAFAHKYSKD------GTVTFVLYGDGAANQGQLFEALNISALWDLPVI 124
            +G   P+  G AF+ KY ++        VT   +GDG  N GQ FE LN++AL+ LP+I
Sbjct: 191 FIGEGIPVATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPII 250

Query: 125 FVSENNHYGLG 130
           FV ENN + +G
Sbjct: 251 FVVENNLWAIG 261

[Close]
BLAST of CmaCh04G003080 vs. TAIR10
Match: AT5G09300.1 (AT5G09300.1 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-14
Identity = 38/128 (29.69%), Postives = 62/128 (48.44%), Query Frame = 1 

Query: 3   AAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFYGG 62
           AA+T +D I   YR+    L RG TL E   +  G ++   KG+   +H+      ++  
Sbjct: 174 AALTPQDVIFPQYREPGVLLWRGFTLQEFANQCFGNKSDYGKGRQMPVHYGSNKLNYFTV 233

Query: 63  HDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFVSE 122
              +  Q P   G A++ K  K        +GDG  ++G    ALNI+A+ + PV+F+  
Sbjct: 234 SATIATQLPNAVGAAYSLKMDKKDACAVTYFGDGGTSEGDFHAALNIAAVMEAPVLFICR 293

Query: 123 NNHYGLGT 131
           NN + + T
Sbjct: 294 NNGWAIST 301

[Close]
BLAST of CmaCh04G003080 vs. TAIR10
Match: AT1G21400.1 (AT1G21400.1 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-13
Identity = 35/130 (26.92%), Postives = 61/130 (46.92%), Query Frame = 1 

Query: 3   AAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFYGG 62
           AA++  D ++  YR+    L RG TL E   +  G +A   KG+   +H+      ++  
Sbjct: 174 AALSPDDVVLPQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTI 233

Query: 63  HDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFVSE 122
              +  Q P   G+ ++ K  K    T    GDG  ++G     LN +A+ + PV+F+  
Sbjct: 234 SSPIATQLPQAAGVGYSLKMDKKNACTVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICR 293

Query: 123 NNHYGLGTGV 133
           NN + + T +
Sbjct: 294 NNGWAISTHI 303

[Close]
BLAST of CmaCh04G003080 vs. NCBI nr
Match: gi|659090920|ref|XP_008446275.1| (PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 7.7e-65
Identity = 122/138 (88.41%), Postives = 124/138 (89.86%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKDAIITAYRDHCTFL RGGTLLEAFAELMGRQ GCSKGKGGSMHFYKKDAGFY
Sbjct: 102 MEAAITKKDAIITAYRDHCTFLGRGGTLLEAFAELMGRQVGCSKGKGGSMHFYKKDAGFY 161

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCGLAFA KYSK+GTVTF LYGDGAANQGQLFEALNISALWDLPVI V
Sbjct: 162 GGHGIVGAQVPLGCGLAFAQKYSKEGTVTFALYGDGAANQGQLFEALNISALWDLPVILV 221

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 222 CENNHYGMGTAEWRAAKS 239

[Close]
BLAST of CmaCh04G003080 vs. NCBI nr
Match: gi|449434869|ref|XP_004135218.1| (PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 6.5e-64
Identity = 120/138 (86.96%), Postives = 124/138 (89.86%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKDAIITAYRDHC FL RGGTLL++FAELMGRQAGCSKGKGGSMHFYKKDAGFY
Sbjct: 98  MEAAITKKDAIITAYRDHCIFLGRGGTLLQSFAELMGRQAGCSKGKGGSMHFYKKDAGFY 157

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCGLAFA KYSK+GTVTF LYGDGAANQGQLFEALNISALWDLPVI V
Sbjct: 158 GGHGIVGAQVPLGCGLAFAQKYSKEGTVTFALYGDGAANQGQLFEALNISALWDLPVILV 217

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 218 CENNHYGMGTAEWRAAKS 235

[Close]
BLAST of CmaCh04G003080 vs. NCBI nr
Match: gi|449458013|ref|XP_004146742.1| (PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 2.5e-63
Identity = 119/138 (86.23%), Postives = 123/138 (89.13%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKDAIITAYRDHCTFL RGGTLLE F+ELMGRQAGCS+GKGGSMHFYKKDAGFY
Sbjct: 112 MEAAITKKDAIITAYRDHCTFLGRGGTLLEVFSELMGRQAGCSRGKGGSMHFYKKDAGFY 171

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCG+AFA KYSKD TVTF LYGDGAANQGQLFEALNISALWDLPVI V
Sbjct: 172 GGHGIVGAQVPLGCGVAFAQKYSKDETVTFALYGDGAANQGQLFEALNISALWDLPVILV 231

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 232 CENNHYGMGTAEWRAAKS 249

[Close]
BLAST of CmaCh04G003080 vs. NCBI nr
Match: gi|659113239|ref|XP_008456471.1| (PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [Cucumis melo])

HSP 1 Score: 248.8 bits (634), Expect = 5.5e-63
Identity = 119/138 (86.23%), Postives = 122/138 (88.41%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKDAIITAYRDHCTFL RGGTLLE FAELMGRQAGCS+GKGGSMHFYKKDA FY
Sbjct: 110 MEAAITKKDAIITAYRDHCTFLGRGGTLLEVFAELMGRQAGCSRGKGGSMHFYKKDAAFY 169

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCG+AFA KYSKD TVTF LYGDGAANQGQLFEALNISALWDLPVI V
Sbjct: 170 GGHGIVGAQVPLGCGVAFAQKYSKDETVTFALYGDGAANQGQLFEALNISALWDLPVILV 229

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 230 CENNHYGMGTAEWRAAKS 247

[Close]
BLAST of CmaCh04G003080 vs. NCBI nr
Match: gi|657994524|ref|XP_008389569.1| (PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Malus domestica])

HSP 1 Score: 247.3 bits (630), Expect = 1.6e-62
Identity = 118/138 (85.51%), Postives = 120/138 (86.96%), Query Frame = 1 

Query: 1   MEAAITKKDAIITAYRDHCTFLRRGGTLLEAFAELMGRQAGCSKGKGGSMHFYKKDAGFY 60
           MEAAITKKD IITAYRDHCTFL RGGTLL+ FAELMGRQAGCSKGKGGSMHFYKKDAGFY
Sbjct: 113 MEAAITKKDCIITAYRDHCTFLGRGGTLLQVFAELMGRQAGCSKGKGGSMHFYKKDAGFY 172

Query: 61  GGHDIVGAQEPLGCGLAFAHKYSKDGTVTFVLYGDGAANQGQLFEALNISALWDLPVIFV 120
           GGH IVGAQ PLGCGLAF  KYSKD TVTF LYGDGAANQGQLFEALNISALWDLP I V
Sbjct: 173 GGHGIVGAQIPLGCGLAFGQKYSKDETVTFALYGDGAANQGQLFEALNISALWDLPAILV 232

Query: 121 SENNHYGLGTGVESIQKS 139
            ENNHYG+GT      KS
Sbjct: 233 CENNHYGMGTAEWRAAKS 250

The following BLAST results are available for this feature:
BLAST of CmaCh04G003080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ODPA2_ARATH5.2e-6179.71Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsi... [more]
ODPA_PEA1.2e-6079.71Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativu... [more]
ODPA1_ARATH1.2e-6079.71Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsi... [more]
ODPA1_ORYSJ4.4e-6078.99Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Oryza sati... [more]
ODPA_SOLTU4.9e-5977.54Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tube... [more]
BLAST of CmaCh04G003080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQD6_CUCSA4.6e-6486.96Pyruvate dehydrogenase E1 component subunit alpha OS=Cucumis sativus GN=Csa_5G60... [more]
A0A0A0KE28_CUCSA1.7e-6386.23Pyruvate dehydrogenase E1 component subunit alpha OS=Cucumis sativus GN=Csa_6G40... [more]
A0A0D2SDF0_GOSRA2.5e-6284.78Pyruvate dehydrogenase E1 component subunit alpha OS=Gossypium raimondii GN=B456... [more]
A0A0B0MJI0_GOSAR2.5e-6284.78Pyruvate dehydrogenase E1 component subunit alpha OS=Gossypium arboreum GN=F383_... [more]
D2D323_GOSHI2.5e-6284.78Pyruvate dehydrogenase E1 component subunit alpha OS=Gossypium hirsutum PE=2 SV=... [more]
BLAST of CmaCh04G003080 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G24180.12.9e-6279.71 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein[more]
AT1G59900.16.5e-6279.71 pyruvate dehydrogenase complex E1 alpha subunit[more]
AT1G01090.11.2e-2640.46 pyruvate dehydrogenase E1 alpha[more]
AT5G09300.12.3e-1429.69 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein[more]
AT1G21400.11.9e-1326.92 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein[more]
BLAST of CmaCh04G003080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090920|ref|XP_008446275.1|7.7e-6588.41PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Cuc... [more]
gi|449434869|ref|XP_004135218.1|6.5e-6486.96PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Cuc... [more]
gi|449458013|ref|XP_004146742.1|2.5e-6386.23PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-li... [more]
gi|659113239|ref|XP_008456471.1|5.5e-6386.23PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-li... [more]
gi|657994524|ref|XP_008389569.1|1.6e-6285.51PREDICTED: pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [Mal... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001017DH_E1
Vocabulary: Molecular Function
TermDefinition
GO:0016624oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0006086 acetyl-CoA biosynthetic process from pyruvate
biological_process GO:0008152 metabolic process
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0045254 pyruvate dehydrogenase complex
molecular_function GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity
molecular_function GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G003080.1CmaCh04G003080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001017Dehydrogenase, E1 componentPFAMPF00676E1_dhcoord: 1..134
score: 2.9
NoneNo IPR availablePANTHERPTHR11516PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLARcoord: 1..133
score: 2.8
NoneNo IPR availablePANTHERPTHR11516:SF40PDHA1 PROTEINcoord: 1..133
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G003080Cucsa.285660Cucumber (Gy14) v1cgycmaB0805
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G003080Watermelon (97103) v2cmawmbB764
CmaCh04G003080Wax gourdcmawgoB0907
CmaCh04G003080Cucurbita maxima (Rimu)cmacmaB532
CmaCh04G003080Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G003080Cucurbita moschata (Rifu)cmacmoB733
CmaCh04G003080Wild cucumber (PI 183967)cmacpiB736
CmaCh04G003080Wild cucumber (PI 183967)cmacpiB763
CmaCh04G003080Cucumber (Chinese Long) v2cmacuB729
CmaCh04G003080Cucumber (Chinese Long) v2cmacuB754
CmaCh04G003080Melon (DHL92) v3.5.1cmameB657
CmaCh04G003080Watermelon (Charleston Gray)cmawcgB660
CmaCh04G003080Watermelon (97103) v1cmawmB704
CmaCh04G003080Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G003080Cucurbita pepo (Zucchini)cmacpeB726
CmaCh04G003080Bottle gourd (USVL1VR-Ls)cmalsiB681
CmaCh04G003080Cucumber (Gy14) v2cgybcmaB653
CmaCh04G003080Melon (DHL92) v3.6.1cmamedB744
CmaCh04G003080Silver-seed gourdcarcmaB0529
CmaCh04G003080Silver-seed gourdcarcmaB1172
CmaCh04G003080Cucumber (Chinese Long) v3cmacucB0866
CmaCh04G003080Cucumber (Chinese Long) v3cmacucB0892