CmaCh04G002960 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G002960
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 1473450 .. 1476356 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCGGGTGCTCTACGGTTGTGCTCGGGTCTTGGTTTCTCCCGCCAAGATCTCTCATGTTTTAACGGTCTTCTTCATCCAACGTTTTGTCCTTTCCCTTCTCGCGTAACCTTCGTCAATTGAACCTTAACTTTGTCCGCGGTTACAGAAGCAATCCGATCGTGGCCAAGTATGTATACCTAGATCCGGTAGCGGAATTTGTAGTAGTCGTAAGTTTTTCTTTCCAATATAGCGCTTTATCTGCTCAAATTGATTCCGGTTTTGCGTTGATTTATATGTTTGGTTGTTTTTGGCAGGAAACCCAGAAATTTAAGGAGAAAGTGTCGGAGAAGCTAGCGAAGGATCGTGAGACGATTGTGGAGGTTTGCTCGAAGTTTATTGTTTTATTGATTTTCGAAACTTTTAGGTTGAAAATGTTGTAATTCGTTCGTTGGGTGATTTGAATTTTGGATGCCCTTGTATTGGGTTGAAGAAGATGTCTGAGAAGCTACCCGTCTTGTGCAACGCAACGAGAATTGGCCCTCTATTATCGGGCGAGGAAAGAGACCCCTTCCTTTTTGGGGGATCAAGTTCCCGGCCCAAGACGCATTCGTTGACAAAATCGCCGTAGGAATGGAGACCTTCCCCTCAAGCGGAGGCGAACTGATCAACGAGAAAGAAGCTCTACTCACTGTAAACGAATACACCACAAGATCAACCTGCACTCATGCCTCTCTCGCATCAAGTTGACCGACCCTACTACGTAGTGATTATATCAATCATGTGTGGGGGCCCTCCATTTTGATTGGTATATCATGAAAAAATCAAGCCATTTGCACCCGGCTCACTGCACTTTCCCTGCCCAGATGTTCGCCTTTCTCAGTCTTAGAAAGGTGACCCGCCGAAGACGGGAGCCCTTTAACATGTTTACGAAGACCTCCTACTTATTAGAGAAAGGGGGTTCGATCAGTAGAGGGGACTACTTTGCCTCCCCGGAAGAGAAAGAGCATCGCTGGACGACTGATCCCGTTGATCATATAACTGGGAGGGAACGTGTCACATTAGTTGTTTATGATTGAATCTTATTTTATGAATGGGCCATCCGAGAAACCTCGAAAGAGATTCGCTTATGAATCTCCTGTTGAAGAGTTAGACTGTTTGTTGAAGAGTTAGACTGTTTGATTGCAGAGTTATTTTAGTTTATTTGTGCTTTTGTGTTTTCATGGCTTGAGAATTATTTCCCATAGGTTCAATGATTCAGCCCTGAGAAAACATCGGACCTGCCAATATAGCTACAGAACTAGTACTGTTTCCAAGACAGCTTCCATTAATTGCGCAGAAATTTTCTGAATGTTTGACCAGTGCTGCCATTATTGATATGCTTCTTGTATTTTGATTTTTCAAATCAAAACTGAAATGAAGATTCCAATTTGAATTCAGTTGTCCGAATTTATGTGATAGTCTTCCAAGTTGTAATATCAGATATTTGGTGAATATTGCATGTGGAGTACGGAGGTTCTGGGACATTGTTGGTGGAGCCTTCCACCCAAAATGGTTATTACTCTCAATGAGAGGAAACTACCAGGAGCCTTTTGCCTCAAGAACTTCGATCCTTTCAGCTCAAAATCATCAAGTTCATGATTGGAATTCGAAAAGAGGGCTTAAATGATCTGTTTTTTCTAGTTACATTTGTGAAGATCCTTGTATTTTGTATTGAGACTTTCTGTTCTTTTTGTTGTTGCAGGCAGATGATGAAGGAAAAACTGTATGCTTCATCACAAAGATACTCCAATACAGTGTCAATTTCATTGATATCTTTGTTGCTATACACATGACTTATTTCTCTCAATACATGAATCATTCTGGGGCTGTGGTTTTACACTGAATTGGAACTTCGGATGCCCATTTTCATGTTCTATATGAATCTTCACACTTTCCACAATGAGCATCTTAAATCAAGCTCTACTATTCTGTCGTATCAACCACACTTGCTTGTCATGATTAAGAAAAAAGGGTTGAACATAAAATCAGCTGGCAGCTTCAGAAATGCTCTGCAACGATGGTCTCCAAGCCTTTGGCCTCGCCGCAGTGGCGTTTGCTGCTGGTGTTCTGATGCGATGTCTTTCATGTTTGACTACCTGCAATGTTTATTTCACAGAGATTATTGGTATGATTTTATCTTGAAAAAATCACTTCAAGTTGCCAAGGATCCCATTCACCATCATATTTGACTTTTTTCATTTTCTTTTGCAGTCATCTGCTGTGATTCAAAAGGAAACAAATCTGGTTACCTGCTGGCTATTTTCAGTCTCATCTCCGGCAGCCGGCTTCTCCGGCTTCCTCTCCGACTCCGGCAATTGCTTCTTGGATTTTGCATACTTTTTAGCTCGCAACACCTTTATAACCTCTGCAAGTTCCAACAAAACGTCAAAAGGGCTGAACTAAAACAGAAGGAAGTGAAAGAACTTCAAATAGATCAAAGAGGCACCATACCCTGAGTAGTGACAAGCCGATAGGCATGGCCAAGAGCAAGAGTGTCATTTGGCCGGAGAAGCTTGACACGAGTAAAACGCACCGTTTTGGGCTCCCGATTATCTTCCTCAGATTGAGGCAAGGGAATTATAAGAGAAACATAGTGACCCGGATTAGTCCTCATGACTTCACTCGCCACCACCGGCCAATACAGCCTCTCAATCCGGCCAGTTGGATGCTGTATAACCAGAGCCGCCGCATCAACCGCCTGGCAATTCCCCATCTGAATGAATTCTGCAACTGATAGATAGATCGAAAGAAGAAGAAGAAGATGATGATGAAGGAAAGAAGTCTCTTTCTATACAGCTTCTGTGCTCGCCAAATGGGTCTACTTAGAAGTGCATGCCGTCCATTCATATATCTCACACTTTCCAACTAACTCAATGCAACGTGG

mRNA sequence

ATGGGGCGGGTGCTCTACGGTTGTGCTCGGGTCTTGGTTTCTCCCGCCAAGATCTCTCATGAAACCCAGAAATTTAAGGAGAAAGTGTCGGAGAAGCTAGCGAAGGATCGTGAGACGATTGTGGAGGCAGATGATGAAGGAAAAACTTCATCTGCTGTGATTCAAAAGGAAACAAATCTGGTTACCTGCTGGCTATTTTCAGTCTCATCTCCGGCAGCCGGCTTCTCCGGCTTCCTCTCCGACTCCGGCAATTGCTTCTTGGATTTTGCATACTTTTTAGCTCGCAACACCTTTATAACCTCTGCAAGTTCCAACAAAACGTCAAAAGGGCTGAACTAAAACAGAAGGAAGTGAAAGAACTTCAAATAGATCAAAGAGGCACCATACCCTGAGTAGTGACAAGCCGATAGGCATGGCCAAGAGCAAGAGTGTCATTTGGCCGGAGAAGCTTGACACGAGTAAAACGCACCGTTTTGGGCTCCCGATTATCTTCCTCAGATTGAGGCAAGGGAATTATAAGAGAAACATAGTGACCCGGATTAGTCCTCATGACTTCACTCGCCACCACCGGCCAATACAGCCTCTCAATCCGGCCAGTTGGATGCTGTATAACCAGAGCCGCCGCATCAACCGCCTGGCAATTCCCCATCTGAATGAATTCTGCAACTGATAGATAGATCGAAAGAAGAAGAAGAAGATGATGATGAAGGAAAGAAGTCTCTTTCTATACAGCTTCTGTGCTCGCCAAATGGGTCTACTTAGAAGTGCATGCCGTCCATTCATATATCTCACACTTTCCAACTAACTCAATGCAACGTGG

Coding sequence (CDS)

ATGGGGCGGGTGCTCTACGGTTGTGCTCGGGTCTTGGTTTCTCCCGCCAAGATCTCTCATGAAACCCAGAAATTTAAGGAGAAAGTGTCGGAGAAGCTAGCGAAGGATCGTGAGACGATTGTGGAGGCAGATGATGAAGGAAAAACTTCATCTGCTGTGATTCAAAAGGAAACAAATCTGGTTACCTGCTGGCTATTTTCAGTCTCATCTCCGGCAGCCGGCTTCTCCGGCTTCCTCTCCGACTCCGGCAATTGCTTCTTGGATTTTGCATACTTTTTAGCTCGCAACACCTTTATAACCTCTGCAAGTTCCAACAAAACGTCAAAAGGGCTGAACTAA

Protein sequence

MGRVLYGCARVLVSPAKISHETQKFKEKVSEKLAKDRETIVEADDEGKTSSAVIQKETNLVTCWLFSVSSPAAGFSGFLSDSGNCFLDFAYFLARNTFITSASSNKTSKGLN
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G002960.1CmaCh04G002960.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 26..46
scor

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G002960CmoCh04G016630Cucurbita moschata (Rifu)cmacmoB733
The following gene(s) are paralogous to this gene:

None