CmaCh04G002780 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G002780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	LINE-type retrotransposon LIb DNA, complete sequence, Insertion at the S10 site
Location	Cma_Chr04 : 1373242 .. 1374468 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTCAATCCAAACATTTCCATTCCAGCCGCCAATTCACCGGCGCCGGCAACGACGGAGCGGCCGCCAGTACCATCGGCGCCACCGTCTGTAACCTCACTCCCTCTCTAACAGCTCGGATCAACCAACAGTTTGATCAGTCTCTCATTGCTTGGGTCGTCGGTATGAAGATTCATCCACGGCAGCTCGCCGTTCGCCTTCGCCGTAATCTTCATCTCGCTGGAGATTTGGACGTCTTCGAGCTAGGGCTTGGCTTTTTCGTGCTCAAATTCTCCAACGCTTTAGACTACTACGAAGCCCTCGAGGAGCGTCCATGGTCGATTTCTCACCTTTGCATCTATGTATTCCCATGGATTCCCAATTTCAAGCCCTCCGAGGCCTCGATTCCTTTCGTTGATGTCTGGATTCGGCTCCCGGAGCTCAGCATCGAGTATTACGACAAGGAGGTTTTGGAGAAAATTGCGAAAACCATCGGCGGCCGTCTCGTGAAAATCGATCCGGTAACTGAAACACGAGAGAAATGTATGTATGCTCGTATCTGTATTAGGATGAATTTAGGTTATCCCCTTAATTTGAGTTTCCAATTTGGGAAAAATCCGCAAAAAATTGTGTATGAGGGTCTGGATTTGTTGTGCATTGTCTGTGGATGTGTTGATGATCTGAAACATGATTGTTTGAGCAACCCTTCTTGTTCTTCTGGCTTTGATCCCCATCACCATAGAGCTCGTCCATTGCAGGCCATTGGCTCGAGTTCGAATTCGAATCCAAGTTCGAGTTCAAATTTGAATCCAAATCCGAGTTTGCGTTCGAGTTCGAATCCGAATCCAAATCCGAGTTTGCGTTCGAGTTCGAATCCGAATCTGAGTTCGAGTTTGAATTCGAATTTGAAGATGCAATTGATTCCTTCTAAACCCGCACCAGCATCAGCTTGTGGATCTAGATTCCAAGTTCTTGAGTTGAATTTGAATGAAGAGCCAAGCCTTCCAGTTAGTGAATCTGATAAAGCAGTAAAAGAATCTCCATCAATAACCATGAAAGCTCCTTTGTTAAAACAGACCAATTTGATTCGATCTGTGCCTTTAGCTCCTTGTGTTCTTGAAGATCATCAGTTCAGGACTGAAAAAACCAGCAGCCCCACAACGCTTGCAGTCGAGGACAATGAACCACAACCATCATCATTGGCTATTAAACGCATAGCTCCCTGCAACCATCTTCTGCTTTAG

mRNA sequence

ATGGCGGTTCAATCCAAACATTTCCATTCCAGCCGCCAATTCACCGGCGCCGGCAACGACGGAGCGGCCGCCAGTACCATCGGCGCCACCGTCTGTAACCTCACTCCCTCTCTAACAGCTCGGATCAACCAACAGTTTGATCAGTCTCTCATTGCTTGGGTCGTCGGTATGAAGATTCATCCACGGCAGCTCGCCGTTCGCCTTCGCCGTAATCTTCATCTCGCTGGAGATTTGGACGTCTTCGAGCTAGGGCTTGGCTTTTTCGTGCTCAAATTCTCCAACGCTTTAGACTACTACGAAGCCCTCGAGGAGCGTCCATGGTCGATTTCTCACCTTTGCATCTATGTATTCCCATGGATTCCCAATTTCAAGCCCTCCGAGGCCTCGATTCCTTTCGTTGATGTCTGGATTCGGCTCCCGGAGCTCAGCATCGAGTATTACGACAAGGAGGTTTTGGAGAAAATTGCGAAAACCATCGGCGGCCGTCTCGTGAAAATCGATCCGGTAACTGAAACACGAGAGAAATGTATGTATGCTCGTATCTGTATTAGGATGAATTTAGGTTATCCCCTTAATTTGAGTTTCCAATTTGGGAAAAATCCGCAAAAAATTGTGTATGAGGGTCTGGATTTGTTGTGCATTGTCTGTGGATGTGTTGATGATCTGAAACATGATTGTTTGAGCAACCCTTCTTGTTCTTCTGGCTTTGATCCCCATCACCATAGAGCTCGTCCATTGCAGGCCATTGGCTCGAGTTCGAATTCGAATCCAAGTTCGAGTTCAAATTTGAATCCAAATCCGAGTTTGCGTTCGAGTTCGAATCCGAATCCAAATCCGAGTTTGCGTTCGAGTTCGAATCCGAATCTGAGTTCGAGTTTGAATTCGAATTTGAAGATGCAATTGATTCCTTCTAAACCCGCACCAGCATCAGCTTGTGGATCTAGATTCCAAGTTCTTGAGTTGAATTTGAATGAAGAGCCAAGCCTTCCAGTTAGTGAATCTGATAAAGCAGTAAAAGAATCTCCATCAATAACCATGAAAGCTCCTTTGTTAAAACAGACCAATTTGATTCGATCTGTGCCTTTAGCTCCTTGTGTTCTTGAAGATCATCAGTTCAGGACTGAAAAAACCAGCAGCCCCACAACGCTTGCAGTCGAGGACAATGAACCACAACCATCATCATTGGCTATTAAACGCATAGCTCCCTGCAACCATCTTCTGCTTTAG

Coding sequence (CDS)

ATGGCGGTTCAATCCAAACATTTCCATTCCAGCCGCCAATTCACCGGCGCCGGCAACGACGGAGCGGCCGCCAGTACCATCGGCGCCACCGTCTGTAACCTCACTCCCTCTCTAACAGCTCGGATCAACCAACAGTTTGATCAGTCTCTCATTGCTTGGGTCGTCGGTATGAAGATTCATCCACGGCAGCTCGCCGTTCGCCTTCGCCGTAATCTTCATCTCGCTGGAGATTTGGACGTCTTCGAGCTAGGGCTTGGCTTTTTCGTGCTCAAATTCTCCAACGCTTTAGACTACTACGAAGCCCTCGAGGAGCGTCCATGGTCGATTTCTCACCTTTGCATCTATGTATTCCCATGGATTCCCAATTTCAAGCCCTCCGAGGCCTCGATTCCTTTCGTTGATGTCTGGATTCGGCTCCCGGAGCTCAGCATCGAGTATTACGACAAGGAGGTTTTGGAGAAAATTGCGAAAACCATCGGCGGCCGTCTCGTGAAAATCGATCCGGTAACTGAAACACGAGAGAAATGTATGTATGCTCGTATCTGTATTAGGATGAATTTAGGTTATCCCCTTAATTTGAGTTTCCAATTTGGGAAAAATCCGCAAAAAATTGTGTATGAGGGTCTGGATTTGTTGTGCATTGTCTGTGGATGTGTTGATGATCTGAAACATGATTGTTTGAGCAACCCTTCTTGTTCTTCTGGCTTTGATCCCCATCACCATAGAGCTCGTCCATTGCAGGCCATTGGCTCGAGTTCGAATTCGAATCCAAGTTCGAGTTCAAATTTGAATCCAAATCCGAGTTTGCGTTCGAGTTCGAATCCGAATCCAAATCCGAGTTTGCGTTCGAGTTCGAATCCGAATCTGAGTTCGAGTTTGAATTCGAATTTGAAGATGCAATTGATTCCTTCTAAACCCGCACCAGCATCAGCTTGTGGATCTAGATTCCAAGTTCTTGAGTTGAATTTGAATGAAGAGCCAAGCCTTCCAGTTAGTGAATCTGATAAAGCAGTAAAAGAATCTCCATCAATAACCATGAAAGCTCCTTTGTTAAAACAGACCAATTTGATTCGATCTGTGCCTTTAGCTCCTTGTGTTCTTGAAGATCATCAGTTCAGGACTGAAAAAACCAGCAGCCCCACAACGCTTGCAGTCGAGGACAATGAACCACAACCATCATCATTGGCTATTAAACGCATAGCTCCCTGCAACCATCTTCTGCTTTAG

Protein sequence

MAVQSKHFHSSRQFTGAGNDGAAASTIGATVCNLTPSLTARINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGDLDVFELGLGFFVLKFSNALDYYEALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWIRLPELSIEYYDKEVLEKIAKTIGGRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQFGKNPQKIVYEGLDLLCIVCGCVDDLKHDCLSNPSCSSGFDPHHHRARPLQAIGSSSNSNPSSSSNLNPNPSLRSSSNPNPNPSLRSSSNPNLSSSLNSNLKMQLIPSKPAPASACGSRFQVLELNLNEEPSLPVSESDKAVKESPSITMKAPLLKQTNLIRSVPLAPCVLEDHQFRTEKTSSPTTLAVEDNEPQPSSLAIKRIAPCNHLLL

Homology

[Close]

BLAST of CmaCh04G002780 vs. TrEMBL
Match: A0A0A0KRY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175800 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 5.3e-73
Identity = 147/243 (60.49%), Postives = 169/243 (69.55%), Query Frame = 1


Query: 33  NLTPSLTARINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGDLDVFELGLGFFVLKF 92
           NLTPS TAR N +F  SLIA V+G  IH   L  RLRR+L L GDL+V  LGLGFF L F
Sbjct: 49  NLTPSQTARNNDEFRHSLIARVIGKNIHHENLTFRLRRHLPLTGDLNVVPLGLGFFALNF 108

Query: 93  SNALDYYEALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWIRLPELSIEYYDKEVL 152
           SN  DYYEAL+ERPW I HLCI+  PWIPNFKPS+A I FVDVWIRLPEL +E+Y++E+ 
Sbjct: 109 SNPFDYYEALKERPWLIPHLCIHASPWIPNFKPSKAFISFVDVWIRLPELGMEHYNREMF 168

Query: 153 EKIAKTIGGRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQFGKNPQKIVYEGLDLL 212
           E IAK IG  LVKIDPVTE ++KCM+ARICI + L  PL        + Q IVYEGLD L
Sbjct: 169 ENIAKAIGVDLVKIDPVTERKQKCMFARICITITLSNPLIHYIHIEGSRQNIVYEGLDSL 228

Query: 213 CIVCGCVDDLKHDCLSN--PSCSSGFDPHHHRARPLQAIGSSSNSNPSSSSNLNPNPSLR 272
           C VCGCVD LKHDCL+   PS SSG+DPH     PLQA   S +S+ SS S+        
Sbjct: 229 CSVCGCVDSLKHDCLNQNIPSASSGYDPHQQNPCPLQAFDPSVSSSSSSGSSSGSGSGSS 288

Query: 273 SSS 274
           SSS
Sbjct: 289 SSS 291

[Close]

BLAST of CmaCh04G002780 vs. TrEMBL
Match: A0A0A0KNJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175780 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.7e-64
Identity = 168/379 (44.33%), Postives = 218/379 (57.52%), Query Frame = 1


Query: 25  STIGATVCNLTPSLTARINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGDLDVFELG 84
           ST  +TVC  + S T  I ++F  SLIAWVVG +I P +LA  L R+L L    DVFELG
Sbjct: 36  STTRSTVCKFSASQTDLIAREFAHSLIAWVVGKEIRPLKLARHLYRHLRLTKLPDVFELG 95

Query: 85  LGFFVLKFSNALDYYEALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWIRLPELSI 144
           LG+FVLKF    D+  A+E+ PW I +LCIY FPW PNFKPSEA    +D WIRL EL I
Sbjct: 96  LGYFVLKFCET-DFL-AIEDNPWPIPNLCIYAFPWTPNFKPSEAMDSAIDCWIRLKELPI 155

Query: 145 EYYDKEVLEKIAKTIGGRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQFGKNPQKI 204
           EYY +++L  I KT+G  LVKIDP+T+ R+KC YARIC+R+N+  PL  S + GK  Q+I
Sbjct: 156 EYYKEDILRDIGKTVGEGLVKIDPITKDRKKCKYARICVRINVYEPLPSSIRIGKILQEI 215

Query: 205 VYEGLDLLCIVCGCVDDLKHDCLSNPSCSSGFDPHHHR--ARPLQAIGSSSNSNPSSSSN 264
            YEG DLLC  C CV  LKHDCL++   SS F+ HH R  +   Q + SS +S    S  
Sbjct: 216 EYEGFDLLCPRCECVVHLKHDCLNSSGSSSSFESHHPRDGSNSKQPLVSSESSVAWGSRY 275

Query: 265 LNPNPSLRSS-------SNPNPNPSLRSSSNPNLSSSLNSNLKMQLIPSKPAPASACGSR 324
             P    +SS       S P+   S ++++  + SSSL   L   L          CG  
Sbjct: 276 EVPGTESKSSLQNLKALSTPSMGGSEKAATRIS-SSSLLPQLSGLLTEPLEKQKEKCGGS 335

Query: 325 FQVLELNLNEEPSLPVSESDKAVKESPSITMKAPLLKQTNLIRSVPLAPCVLEDHQFRTE 384
           F+    NL +E           ++ES S T+  P+L+  NL  S+ LAP   E + F   
Sbjct: 336 FETFP-NLPKEDLPRALSISSNLEESSSSTISVPVLEHKNLNLSMVLAPLPAE-NPFTPA 395

Query: 385 KTSSPTTLAVEDNEPQPSS 395
           +T   T L V +N+PQPSS
Sbjct: 396 ETRCSTKLEVYNNQPQPSS 409

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BLAST of CmaCh04G002780 vs. TrEMBL
Match: A0A0A0KLB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175790 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.2e-61
Identity = 184/445 (41.35%), Postives = 236/445 (53.03%), Query Frame = 1


Query: 8   FHSSRQFTGAGNDGAAA-------------------------STIGATVCN--LTPSLTA 67
           F S    TGAG+D AAA                         ST  ATVCN  LTPS T 
Sbjct: 3   FQSGHPPTGAGDDEAAARNYLSRKKPKVPPPIPPSSDFHSRRSTTIATVCNCNLTPSETT 62

Query: 68  RINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGDLDVFELGLGFFVLKFSNALDYYE 127
           RI QQF  SLIA VVG    P QLA RLR +L L  D+ VF+LGLG+FVLKFS   DY  
Sbjct: 63  RITQQFVHSLIARVVGKDTRPGQLAARLRHHLRLTQDVKVFQLGLGYFVLKFSET-DYL- 122

Query: 128 ALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWIRLPELSIEYYDKEVLEKIAKTIG 187
           ALE+ PWSI +LCI+ FPW P+FKPSEA    V+VWIRLPELSIEYYD  +L++IA  IG
Sbjct: 123 ALEDLPWSIPNLCIHAFPWTPDFKPSEAINSSVNVWIRLPELSIEYYDVGILKRIADAIG 182

Query: 188 GRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQFGKNPQKIVYEGLDLLCIVCGCVD 247
             LVKIDPVT  R KC +AR CI +NL  PL    + G+  Q+I YEG + LC  C  V 
Sbjct: 183 DPLVKIDPVTRDRWKCKFARFCISVNLCDPLPSMIELGRVRQRIEYEGFE-LCAKCNRVG 242

Query: 248 DLKHDC------------LSNPSCSSGF-----DPHHHRARPLQAIGSSSNSNPSSSSNL 307
           DL+HDC            L+NPS S GF     +PHH   R  + IGS+SNS        
Sbjct: 243 DLRHDCSSLNNPSLNNPSLNNPSGSYGFNPHGDEPHHSVTRDFKEIGSTSNSKQPLIPES 302

Query: 308 NPNPSLRSSS--NPNPNPSLRSSSNPNL----SSSLNSNLKMQLIPSKPAPASACGSRFQ 367
           +P  +  SS     NP   L+    PNL    S    S +++   P           + +
Sbjct: 303 SPVSAWESSRFIEKNPPLDLKLIDWPNLPKRESGKAGSGVRIS-SPRVHVKDKEIPKKKE 362

Query: 368 VLELNLNEEPSLPVSESDKAVKESPSITMKAPLLKQTNLIRSVPLAPCVLEDHQFRTEKT 403
             E+++   P+LP        K+  +IT+KAP LK+        + P V+ED + +  KT
Sbjct: 363 KCEISVQRLPNLP--------KQCSTITIKAPELKR--------VVPSVVED-RLKDTKT 422

[Close]

BLAST of CmaCh04G002780 vs. TrEMBL
Match: F6HHZ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0158g00410 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 84/174 (48.28%), Postives = 105/174 (60.34%), Query Frame = 1


Query: 35  TPSLTARINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGDLDVFELGLGFFVLKFSN 94
           +P+  AR+ +Q+  SLIA V+G K+  +     L R     G L + ELG  FFVLKFS 
Sbjct: 38  SPTELARLREQWKYSLIAKVLGKKLQLQYYRDHLLRLWSAEGSLKIIELGCEFFVLKFSE 97

Query: 95  ALDYYEALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWIRLPELSIEYYDKEVLEK 154
            LDY +  +  PW I    I + PW  NFKPSEA+I    VW RLPEL IEYYDKEVL +
Sbjct: 98  FLDYEKVRKGVPWLIHGYYIAIRPWSENFKPSEATITHTWVWARLPELPIEYYDKEVLFE 157

Query: 155 IAKTIGGRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQFGKNPQKIVYEG 209
           I + I GR +KIDP+TE +EK  +ARICI ++L  PL          QKI YEG
Sbjct: 158 IGEAI-GRPIKIDPITERQEKGRFARICIEVDLRRPLIAHVDLAGLQQKIEYEG 210

[Close]

BLAST of CmaCh04G002780 vs. TrEMBL
Match: A5AT31_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006250 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.6e-31
Identity = 108/335 (32.24%), Postives = 168/335 (50.15%), Query Frame = 1


Query: 19  NDGAAASTIGATVCNLTPSLTARINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGDL 78
           +DG+  ++    +  L+ +    ++  +  SLIA V+G K+  +     L R   L G +
Sbjct: 73  DDGSGDTSCNIPMIKLSSTEKENLSAPWKYSLIAKVLGRKVGLQYCQAHLHRLWSLEGTV 132

Query: 79  DVFELGLGFFVLKFSNALDYYEALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWIR 138
           D+ +LG GFF+LKFS   DY +  +  PW I    I + PW+PNFKPSEA+I    VW+R
Sbjct: 133 DIIDLGYGFFLLKFSLPTDYIKVFKGVPWLIHGYYISLRPWVPNFKPSEATITHAKVWVR 192

Query: 139 LPELSIEYYDKEVLEKIAKTIGGRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQFG 198
           LPEL IEYYDKEVL +I   I GR +KIDP+TE + +  +AR+C+ ++L + L    + G
Sbjct: 193 LPELPIEYYDKEVLLQIGAAI-GRTIKIDPITEKQARGRFARMCVEVDLKHSLLPQIKLG 252

Query: 199 KNPQKIVYEGLDLLCIVCGCVDDLKHDCLSNPSCSSGFDPHHHRARPLQAIGSSSNSNPS 258
           +  QKI YEG          V+ L+ D    P   +    H + +   + +  +    P+
Sbjct: 253 ELQQKIEYEGY---------VEQLQQDYSPCPPLIAN-PTHSYSSSHTKFVHPNPLGAPN 312

Query: 259 SSSNLNPNPSLRSSSNPNPNPSLRSSSNPNLSSSLNSNLKMQLIPSKPAPA----SACGS 318
           +S N+  N    S               P   +  +S  +   +P + A      S+ GS
Sbjct: 313 ASQNVASNNRKTSIDATWLRVPCWQRKCPQ-KTETDSGSQGPKVPKEKAMTGTGLSSSGS 372

Query: 319 RFQVLELNLNEEPSLPVSESDKAVKESPSITMKAP 350
           RF VLEL  + +P++    S K   E  S++  +P
Sbjct: 373 RFSVLELENHLDPAVEPKPS-KGKSEHTSVSTSSP 394

[Close]

BLAST of CmaCh04G002780 vs. TAIR10
Match: AT2G01050.1 (AT2G01050.1 zinc ion binding;nucleic acid binding)

HSP 1 Score: 99.0 bits (245), Expect = 7.2e-21
Identity = 64/212 (30.19%), Postives = 97/212 (45.75%), Query Frame = 1


Query: 18  GNDGAAASTIGATVCNLTPSLTARINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGD 77
           G D     TIG  V          +N  + + +I  V+G +I    L  +LR     +G 
Sbjct: 56  GEDEEPVITIGEEVLEA-------MNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGV 115

Query: 78  LDVFELGLGFFVLKFSNALDYYEALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWI 137
           + V +L   FF+++F    +Y  AL   PW +    + V  W   F P    I    VW+
Sbjct: 116 MTVMDLPRQFFMIRFELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWV 175

Query: 138 RLPELSIEYYDKEVLEKIAKTIGGRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQF 197
           RL  +   YY + +L +IA+ + GR +K+D  T   +K  +AR+CI +NL  PL  +   
Sbjct: 176 RLSNIPYNYYHRCLLMEIARGL-GRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLI 235

Query: 198 GKNPQKIVYEGLDLLCIVCGCVDDLKHDCLSN 230
             +   + YEGL  +C  CG    L H C  N
Sbjct: 236 NGDRYFVAYEGLSKICSSCGIYGHLVHSCPRN 259

[Close]

BLAST of CmaCh04G002780 vs. NCBI nr
Match: gi|700195279|gb|KGN50456.1| (hypothetical protein Csa_5G175800 [Cucumis sativus])

HSP 1 Score: 283.1 bits (723), Expect = 7.7e-73
Identity = 147/243 (60.49%), Postives = 169/243 (69.55%), Query Frame = 1


Query: 33  NLTPSLTARINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGDLDVFELGLGFFVLKF 92
           NLTPS TAR N +F  SLIA V+G  IH   L  RLRR+L L GDL+V  LGLGFF L F
Sbjct: 49  NLTPSQTARNNDEFRHSLIARVIGKNIHHENLTFRLRRHLPLTGDLNVVPLGLGFFALNF 108

Query: 93  SNALDYYEALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWIRLPELSIEYYDKEVL 152
           SN  DYYEAL+ERPW I HLCI+  PWIPNFKPS+A I FVDVWIRLPEL +E+Y++E+ 
Sbjct: 109 SNPFDYYEALKERPWLIPHLCIHASPWIPNFKPSKAFISFVDVWIRLPELGMEHYNREMF 168

Query: 153 EKIAKTIGGRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQFGKNPQKIVYEGLDLL 212
           E IAK IG  LVKIDPVTE ++KCM+ARICI + L  PL        + Q IVYEGLD L
Sbjct: 169 ENIAKAIGVDLVKIDPVTERKQKCMFARICITITLSNPLIHYIHIEGSRQNIVYEGLDSL 228

Query: 213 CIVCGCVDDLKHDCLSN--PSCSSGFDPHHHRARPLQAIGSSSNSNPSSSSNLNPNPSLR 272
           C VCGCVD LKHDCL+   PS SSG+DPH     PLQA   S +S+ SS S+        
Sbjct: 229 CSVCGCVDSLKHDCLNQNIPSASSGYDPHQQNPCPLQAFDPSVSSSSSSGSSSGSGSGSS 288

Query: 273 SSS 274
           SSS
Sbjct: 289 SSS 291

[Close]

BLAST of CmaCh04G002780 vs. NCBI nr
Match: gi|700195277|gb|KGN50454.1| (hypothetical protein Csa_5G175780 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 3.8e-64
Identity = 168/379 (44.33%), Postives = 218/379 (57.52%), Query Frame = 1


Query: 25  STIGATVCNLTPSLTARINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGDLDVFELG 84
           ST  +TVC  + S T  I ++F  SLIAWVVG +I P +LA  L R+L L    DVFELG
Sbjct: 36  STTRSTVCKFSASQTDLIAREFAHSLIAWVVGKEIRPLKLARHLYRHLRLTKLPDVFELG 95

Query: 85  LGFFVLKFSNALDYYEALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWIRLPELSI 144
           LG+FVLKF    D+  A+E+ PW I +LCIY FPW PNFKPSEA    +D WIRL EL I
Sbjct: 96  LGYFVLKFCET-DFL-AIEDNPWPIPNLCIYAFPWTPNFKPSEAMDSAIDCWIRLKELPI 155

Query: 145 EYYDKEVLEKIAKTIGGRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQFGKNPQKI 204
           EYY +++L  I KT+G  LVKIDP+T+ R+KC YARIC+R+N+  PL  S + GK  Q+I
Sbjct: 156 EYYKEDILRDIGKTVGEGLVKIDPITKDRKKCKYARICVRINVYEPLPSSIRIGKILQEI 215

Query: 205 VYEGLDLLCIVCGCVDDLKHDCLSNPSCSSGFDPHHHR--ARPLQAIGSSSNSNPSSSSN 264
            YEG DLLC  C CV  LKHDCL++   SS F+ HH R  +   Q + SS +S    S  
Sbjct: 216 EYEGFDLLCPRCECVVHLKHDCLNSSGSSSSFESHHPRDGSNSKQPLVSSESSVAWGSRY 275

Query: 265 LNPNPSLRSS-------SNPNPNPSLRSSSNPNLSSSLNSNLKMQLIPSKPAPASACGSR 324
             P    +SS       S P+   S ++++  + SSSL   L   L          CG  
Sbjct: 276 EVPGTESKSSLQNLKALSTPSMGGSEKAATRIS-SSSLLPQLSGLLTEPLEKQKEKCGGS 335

Query: 325 FQVLELNLNEEPSLPVSESDKAVKESPSITMKAPLLKQTNLIRSVPLAPCVLEDHQFRTE 384
           F+    NL +E           ++ES S T+  P+L+  NL  S+ LAP   E + F   
Sbjct: 336 FETFP-NLPKEDLPRALSISSNLEESSSSTISVPVLEHKNLNLSMVLAPLPAE-NPFTPA 395

Query: 385 KTSSPTTLAVEDNEPQPSS 395
           +T   T L V +N+PQPSS
Sbjct: 396 ETRCSTKLEVYNNQPQPSS 409

[Close]

BLAST of CmaCh04G002780 vs. NCBI nr
Match: gi|778700726|ref|XP_011654905.1| (PREDICTED: uncharacterized protein LOC105435457 isoform X1 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 1.2e-62
Identity = 184/435 (42.30%), Postives = 236/435 (54.25%), Query Frame = 1


Query: 8   FHSSRQFTGAGNDGAAA-------------------------STIGATVCN--LTPSLTA 67
           F S    TGAG+D AAA                         ST  ATVCN  LTPS T 
Sbjct: 3   FQSGHPPTGAGDDEAAARNYLSRKKPKVPPPIPPSSDFHSRRSTTIATVCNCNLTPSETT 62

Query: 68  RINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGDLDVFELGLGFFVLKFSNALDYYE 127
           RI QQF  SLIA VVG    P QLA RLR +L L  D+ VF+LGLG+FVLKFS   DY  
Sbjct: 63  RITQQFVHSLIARVVGKDTRPGQLAARLRHHLRLTQDVKVFQLGLGYFVLKFSET-DYL- 122

Query: 128 ALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWIRLPELSIEYYDKEVLEKIAKTIG 187
           ALE+ PWSI +LCI+ FPW P+FKPSEA    V+VWIRLPELSIEYYD  +L++IA  IG
Sbjct: 123 ALEDLPWSIPNLCIHAFPWTPDFKPSEAINSSVNVWIRLPELSIEYYDVGILKRIADAIG 182

Query: 188 GRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQFGKNPQKIVYEGLDLLCIVCGCVD 247
             LVKIDPVT  R KC +AR CI +NL  PL    + G+  Q+I YEG + LC  C  V 
Sbjct: 183 DPLVKIDPVTRDRWKCKFARFCISVNLCDPLPSMIELGRVRQRIEYEGFE-LCAKCNRVG 242

Query: 248 DLKHDC--LSNPSCSSGF-----DPHHHRARPLQAIGSSSNSNPSSSSNLNPNPSLRSSS 307
           DL+HDC  L+NPS S GF     +PHH   R  + IGS+SNS        +P  +  SS 
Sbjct: 243 DLRHDCSSLNNPSGSYGFNPHGDEPHHSVTRDFKEIGSTSNSKQPLIPESSPVSAWESSR 302

Query: 308 --NPNPNPSLRSSSNPNL----SSSLNSNLKMQLIPSKPAPASACGSRFQVLELNLNEEP 367
               NP   L+    PNL    S    S +++   P           + +  E+++   P
Sbjct: 303 FIEKNPPLDLKLIDWPNLPKRESGKAGSGVRIS-SPRVHVKDKEIPKKKEKCEISVQRLP 362

Query: 368 SLPVSESDKAVKESPSITMKAPLLKQTNLIRSVPLAPCVLEDHQFRTEKTSSPTTLAVED 403
           +LP        K+  +IT+KAP LK+        + P V+ED + +  KT + T +A  +
Sbjct: 363 NLP--------KQCSTITIKAPELKR--------VVPSVVED-RLKDTKTINSTMIADHN 416

[Close]

BLAST of CmaCh04G002780 vs. NCBI nr
Match: gi|700195278|gb|KGN50455.1| (hypothetical protein Csa_5G175790 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 1.8e-61
Identity = 184/445 (41.35%), Postives = 236/445 (53.03%), Query Frame = 1


Query: 8   FHSSRQFTGAGNDGAAA-------------------------STIGATVCN--LTPSLTA 67
           F S    TGAG+D AAA                         ST  ATVCN  LTPS T 
Sbjct: 3   FQSGHPPTGAGDDEAAARNYLSRKKPKVPPPIPPSSDFHSRRSTTIATVCNCNLTPSETT 62

Query: 68  RINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGDLDVFELGLGFFVLKFSNALDYYE 127
           RI QQF  SLIA VVG    P QLA RLR +L L  D+ VF+LGLG+FVLKFS   DY  
Sbjct: 63  RITQQFVHSLIARVVGKDTRPGQLAARLRHHLRLTQDVKVFQLGLGYFVLKFSET-DYL- 122

Query: 128 ALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWIRLPELSIEYYDKEVLEKIAKTIG 187
           ALE+ PWSI +LCI+ FPW P+FKPSEA    V+VWIRLPELSIEYYD  +L++IA  IG
Sbjct: 123 ALEDLPWSIPNLCIHAFPWTPDFKPSEAINSSVNVWIRLPELSIEYYDVGILKRIADAIG 182

Query: 188 GRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQFGKNPQKIVYEGLDLLCIVCGCVD 247
             LVKIDPVT  R KC +AR CI +NL  PL    + G+  Q+I YEG + LC  C  V 
Sbjct: 183 DPLVKIDPVTRDRWKCKFARFCISVNLCDPLPSMIELGRVRQRIEYEGFE-LCAKCNRVG 242

Query: 248 DLKHDC------------LSNPSCSSGF-----DPHHHRARPLQAIGSSSNSNPSSSSNL 307
           DL+HDC            L+NPS S GF     +PHH   R  + IGS+SNS        
Sbjct: 243 DLRHDCSSLNNPSLNNPSLNNPSGSYGFNPHGDEPHHSVTRDFKEIGSTSNSKQPLIPES 302

Query: 308 NPNPSLRSSS--NPNPNPSLRSSSNPNL----SSSLNSNLKMQLIPSKPAPASACGSRFQ 367
           +P  +  SS     NP   L+    PNL    S    S +++   P           + +
Sbjct: 303 SPVSAWESSRFIEKNPPLDLKLIDWPNLPKRESGKAGSGVRIS-SPRVHVKDKEIPKKKE 362

Query: 368 VLELNLNEEPSLPVSESDKAVKESPSITMKAPLLKQTNLIRSVPLAPCVLEDHQFRTEKT 403
             E+++   P+LP        K+  +IT+KAP LK+        + P V+ED + +  KT
Sbjct: 363 KCEISVQRLPNLP--------KQCSTITIKAPELKR--------VVPSVVED-RLKDTKT 422

[Close]

BLAST of CmaCh04G002780 vs. NCBI nr
Match: gi|147805812|emb|CAN60544.1| (hypothetical protein VITISV_006250 [Vitis vinifera])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 108/335 (32.24%), Postives = 168/335 (50.15%), Query Frame = 1


Query: 19  NDGAAASTIGATVCNLTPSLTARINQQFDQSLIAWVVGMKIHPRQLAVRLRRNLHLAGDL 78
           +DG+  ++    +  L+ +    ++  +  SLIA V+G K+  +     L R   L G +
Sbjct: 73  DDGSGDTSCNIPMIKLSSTEKENLSAPWKYSLIAKVLGRKVGLQYCQAHLHRLWSLEGTV 132

Query: 79  DVFELGLGFFVLKFSNALDYYEALEERPWSISHLCIYVFPWIPNFKPSEASIPFVDVWIR 138
           D+ +LG GFF+LKFS   DY +  +  PW I    I + PW+PNFKPSEA+I    VW+R
Sbjct: 133 DIIDLGYGFFLLKFSLPTDYIKVFKGVPWLIHGYYISLRPWVPNFKPSEATITHAKVWVR 192

Query: 139 LPELSIEYYDKEVLEKIAKTIGGRLVKIDPVTETREKCMYARICIRMNLGYPLNLSFQFG 198
           LPEL IEYYDKEVL +I   I GR +KIDP+TE + +  +AR+C+ ++L + L    + G
Sbjct: 193 LPELPIEYYDKEVLLQIGAAI-GRTIKIDPITEKQARGRFARMCVEVDLKHSLLPQIKLG 252

Query: 199 KNPQKIVYEGLDLLCIVCGCVDDLKHDCLSNPSCSSGFDPHHHRARPLQAIGSSSNSNPS 258
           +  QKI YEG          V+ L+ D    P   +    H + +   + +  +    P+
Sbjct: 253 ELQQKIEYEGY---------VEQLQQDYSPCPPLIAN-PTHSYSSSHTKFVHPNPLGAPN 312

Query: 259 SSSNLNPNPSLRSSSNPNPNPSLRSSSNPNLSSSLNSNLKMQLIPSKPAPA----SACGS 318
           +S N+  N    S               P   +  +S  +   +P + A      S+ GS
Sbjct: 313 ASQNVASNNRKTSIDATWLRVPCWQRKCPQ-KTETDSGSQGPKVPKEKAMTGTGLSSSGS 372

Query: 319 RFQVLELNLNEEPSLPVSESDKAVKESPSITMKAP 350
           RF VLEL  + +P++    S K   E  S++  +P
Sbjct: 373 RFSVLELENHLDPAVEPKPS-KGKSEHTSVSTSSP 394

The following BLAST results are available for this feature:

BLAST of CmaCh04G002780 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G002780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRY0_CUCSA	5.3e-73	60.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175800 PE=4 SV=1	[more]
A0A0A0KNJ5_CUCSA	2.7e-64	44.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175780 PE=4 SV=1	[more]
A0A0A0KLB0_CUCSA	1.2e-61	41.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175790 PE=4 SV=1	[more]
F6HHZ0_VITVI	1.1e-33	48.28	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0158g00410 PE=4 SV=...	[more]
A5AT31_VITVI	8.6e-31	32.24	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006250 PE=4 SV=1	[more]

BLAST of CmaCh04G002780 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01050.1	7.2e-21	30.19	zinc ion binding;nucleic acid binding	[more]

BLAST of CmaCh04G002780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195279\|gb\|KGN50456.1\|	7.7e-73	60.49	hypothetical protein Csa_5G175800 [Cucumis sativus]	[more]
gi\|700195277\|gb\|KGN50454.1\|	3.8e-64	44.33	hypothetical protein Csa_5G175780 [Cucumis sativus]	[more]
gi\|778700726\|ref\|XP_011654905.1\|	1.2e-62	42.30	PREDICTED: uncharacterized protein LOC105435457 isoform X1 [Cucumis sativus]	[more]
gi\|700195278\|gb\|KGN50455.1\|	1.8e-61	41.35	hypothetical protein Csa_5G175790 [Cucumis sativus]	[more]
gi\|147805812\|emb\|CAN60544.1\|	1.2e-30	32.24	hypothetical protein VITISV_006250 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025558	DUF4283

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G002780.1	CmaCh04G002780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 42..183 score: 1.8
None	No IPR available	PANTHER	PTHR31286	FAMILY NOT NAMED	coord: 41..226 score: 3.3
None	No IPR available	PANTHER	PTHR31286:SF7	SUBFAMILY NOT NAMED	coord: 41..226 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G002780	ClCG02G013980	Watermelon (Charleston Gray)	cmawcgB642

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G002780	Silver-seed gourd	carcmaB1171
CmaCh04G002780	Silver-seed gourd	carcmaB1179
CmaCh04G002780	Cucumber (Chinese Long) v3	cmacucB0883
CmaCh04G002780	Cucumber (Chinese Long) v3	cmacucB0850
CmaCh04G002780	Cucumber (Chinese Long) v3	cmacucB0892
CmaCh04G002780	Watermelon (97103) v2	cmawmbB741
CmaCh04G002780	Wax gourd	cmawgoB0910
CmaCh04G002780	Cucurbita maxima (Rimu)	cmacmaB531
CmaCh04G002780	Cucumber (Gy14) v1	cgycmaB0471
CmaCh04G002780	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G002780	Cucurbita moschata (Rifu)	cmacmoB730
CmaCh04G002780	Wild cucumber (PI 183967)	cmacpiB757
CmaCh04G002780	Wild cucumber (PI 183967)	cmacpiB763
CmaCh04G002780	Cucumber (Chinese Long) v2	cmacuB747
CmaCh04G002780	Cucumber (Chinese Long) v2	cmacuB754
CmaCh04G002780	Melon (DHL92) v3.5.1	cmameB654
CmaCh04G002780	Watermelon (97103) v1	cmawmB650
CmaCh04G002780	Watermelon (97103) v1	cmawmB724
CmaCh04G002780	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G002780	Cucurbita pepo (Zucchini)	cmacpeB722
CmaCh04G002780	Bottle gourd (USVL1VR-Ls)	cmalsiB677
CmaCh04G002780	Cucumber (Gy14) v2	cgybcmaB674
CmaCh04G002780	Melon (DHL92) v3.6.1	cmamedB738