CmaCh04G002210 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G002210
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 1065243 .. 1067518 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCGTTTTTCAGCTCCTCCCCCTCTTTCACCTTAGCTTTGTTTATTCCTTCTGTCATTCAAATTTTGGAGCCCAACGTTAAGAAGGCCTAAATTTTGATTGCTAAAATGGTTCAAATTCTTTCATATGTTTTATAATTAATTAATTTATTCTCCCACAAGATTTATCTCTAAATCTGTGAAGGGATAGGGGTTTTAGATTTATGTGGGTTGTTTTCATTTTTATGTTGTTGTTCTTCTGAACCAATTTATGTATGTAATATAATTTTATCAGGTAGTACCGTACTTGATAAAATATTATATTTATGGATACTCCATTCTTTGTTTTTTCTTTTCAAGAACCTCATATTGACCTTTGAAGGATTGTGAAACAAAGGGCTGTCCATTATAAATACAGAAGAAATTAGAGATTGGGAAACGTAAGATTAGGAGCTTTGATTCTCTCCTGTATTAGAAAATCTTCCTCTTCCAGAAGTGCGAGATGTGGAAGCCCTCCATCTCCCTCAAAACAGCCCATTCATTTGCAAATTCCTTTGCAAAGCTGTATGGGCCATGTGTGTTAGTGCATGCTCTACCAATATCACTGCATTGTACGATGCTCTCCATTCTGTTGCCTCAAATCTCTCCAGTCTGAGAATTTGGCCCCCACGAATGAAATCATGTTCACAAATATAATAACATTATCACATTTACTACAAACTAGACCTAATAAAACAAACCTCTTGTGAAGAATCTCCACAATTCTGTACAACTCATCAACTTCGAAGGTGCCCATGGATTCCCACTTGTCGCTTCTTCTGTTAACCTAAAACATTCGACAATGACATAGTTTAACTAGCTAAGATATATATTTTCATTTTCGAGCGGCAAATGTCGAAAGAAAACTTACCATTGTACGTGAGTAACCGATTTTGACATGTTCTTTTGAGGAAGAAACAAACTTTCTTCTTCAATTCATGGAAGTAAGAGTGTTCCATTTTGGTTGAAGAACAATCGAAGAGAAACCCATTTTATTTAAGGCCTCATATTCAAATGACATAAGAAGAAACATAACTGTTCCATTTATGTCTCAACTGCTCCCTGGAAGTTGATGTGCAAATCAAATACACACAAAGCCAACTCCAAGAATTCATTCAAACCTTATCTATCTTAAGCTTTATGATTTAGGTATCTACCTAATATGCTCCCTAAAAGTCACGGGGTTCTTTATTTACTTATGGTAATATAATGTTACCTTCTTCAATTTTTTTTAATTTATTTCTTCGTTTTCTAAAATATTTTTTTGCAAACGTGACTCGAGGTCCAATACGTCGATGTTGTCCATGACATCCGAATACGTCGATGTTGTCCATGATATCCGAATTTTTCACAGCTAACCTGTTCATTGAGTTAGAATAAGTGTGCACTATCATTGTCTGCTTAATATTTTATTTGATGGCTACTCATTCAATTATATGGTTACATTAGAAGAAAAAAAACACCGAAAATGTTTGTTATAATCGGAACTCTCCCCTTTATTTGACGATTTAATTTACATTATTTTCAGGGAAAAATGATGGAAAATTACAATTCCAAACAGATGAACAGAGGACGAAATTCAGGGATCAGTTTTTAGAGAGAAAAAGAAGCAGAGGAGAAGCGGGATTCAATGAACAACGGTAACCGGCGGCGGCTTAAATCTGCTACCGGCGCCACCGTAACTGATATTTCTCTGATGCGGCAACGCGAGCATGGCGGTGTAGTCCAAAAAATCATTCAGCGCAATAACGGCCTGCAAAATCCGTTTCAAATCATCGGCGGCGGAGAATCCGAAGCATCCTCTTTCGCGGACAGCATACACGTAAAAAGTTAAACAACCTTTTCTAAATTTAAACCTAGCCATCTCACAGCCGTTCAGTCCCCGAATCAGCCGTCGATTCACATCGCCGAGAGTCATTTCCGCCGGCCACCTGTGGCCGACGGCAGCCTTCAGAGCCTCCGTCTCGAACACAAACAGAATCACCTTCGATTTCTTCGTGCCGAGGCCGAACGTCAGATTGTGCCAAGCGTGGTGCGCCAGAATCGTGAAATTCGTCGGCAGGAACACGGCGGTGGAATTGAACGGAAGGCGATTTTGGTTGTTATTGTCGCTGTTGCCGTCGTGGTGCGGCGGCAGAGAAAGTAGCTGGAGGAATTCAAGAGGCCAGGCTCGGCGAATTGTGAAGGATTTGACAACGAATTGGGCGCCGAATCGGAGACCTTTGACAGCGGTAGATGGCTTGAAGGAGAAATCG

mRNA sequence

ATGGAAGCGTTTTTCAGCTCCTCCCCCTCTTTCACCTTAGCTTTGTTTATTCCTTCTGTCATTCAAATTTTGGAGCCCAACAGAGAAAAAGAAGCAGAGGAGAAGCGGGATTCAATGAACAACGGTAACCGGCGGCGGCTTAAATCTGCTACCGGCGCCACCGTAACTGATATTTCTCTGATGCGGCAACGCGAGCATGGCGGTGTAGTCCAAAAAATCATTCAGCGCAATAACGGCCTGCAAAATCCGTTTCAAATCATCGGCGGCGGAGAATCCGAAGCATCCTCTTTCGCGGACAGCATACACCCGTTCAGTCCCCGAATCAGCCGTCGATTCACATCGCCGAGAGTCATTTCCGCCGGCCACCTGTGGCCGACGGCAGCCTTCAGAGCCTCCGTCTCGAACACAAACAGAATCACCTTCGATTTCTTCGTGCCGAGGCCGAACGTCAGATTGTGCCAAGCGTGGTGCGCCAGAATCGTGAAATTCGTCGGCAGGAACACGGCGGTGGAATTGAACGGAAGGCGATTTTGGTTGTTATTGTCGCTGTTGCCGTCGTGGTGCGGCGGCAGAGAAAGTAGCTGGAGGAATTCAAGAGGCCAGGCTCGGCGAATTGTGAAGGATTTGACAACGAATTGGGCGCCGAATCGGAGACCTTTGACAGCGGTAGATGGCTTGAAGGAGAAATCG

Coding sequence (CDS)

ATGGAAGCGTTTTTCAGCTCCTCCCCCTCTTTCACCTTAGCTTTGTTTATTCCTTCTGTCATTCAAATTTTGGAGCCCAACAGAGAAAAAGAAGCAGAGGAGAAGCGGGATTCAATGAACAACGGTAACCGGCGGCGGCTTAAATCTGCTACCGGCGCCACCGTAACTGATATTTCTCTGATGCGGCAACGCGAGCATGGCGGTGTAGTCCAAAAAATCATTCAGCGCAATAACGGCCTGCAAAATCCGTTTCAAATCATCGGCGGCGGAGAATCCGAAGCATCCTCTTTCGCGGACAGCATACACCCGTTCAGTCCCCGAATCAGCCGTCGATTCACATCGCCGAGAGTCATTTCCGCCGGCCACCTGTGGCCGACGGCAGCCTTCAGAGCCTCCGTCTCGAACACAAACAGAATCACCTTCGATTTCTTCGTGCCGAGGCCGAACGTCAGATTGTGCCAAGCGTGGTGCGCCAGAATCGTGAAATTCGTCGGCAGGAACACGGCGGTGGAATTGAACGGAAGGCGATTTTGGTTGTTATTGTCGCTGTTGCCGTCGTGGTGCGGCGGCAGAGAAAGTAGCTGGAGGAATTCAAGAGGCCAGGCTCGGCGAATTGTGAAGGATTTGACAACGAATTGGGCGCCGAATCGGAGACCTTTGACAGCGGTAGATGGCTTGAAGGAGAAATCG

Protein sequence

MEAFFSSSPSFTLALFIPSVIQILEPNREKEAEEKRDSMNNGNRRRLKSATGATVTDISLMRQREHGGVVQKIIQRNNGLQNPFQIIGGGESEASSFADSIHPFSPRISRRFTSPRVISAGHLWPTAAFRASVSNTNRITFDFFVPRPNVRLCQAWCARIVKFVGRNTAVELNGRRFWLLLSLLPSWCGGRESSWRNSRGQARRIVKDLTTNWAPNRRPLTAVDGLKEKS
Homology
[Close]
BLAST of CmaCh04G002210 vs. TrEMBL
Match: A0A0A9MTX3_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12
Identity = 38/63 (60.32%), Postives = 42/63 (66.67%), Query Frame = 1 

Query: 103 PFSPRISRRFTSPRVISAGHLWPTAAFRASVSNTNRITFDFFVPRPNVRLCQAWCARIVK 162
           P SPR+S   TSP  I AG  W TAAF  S SNT   T DF VPRP+V +C AWCAR+VK
Sbjct: 16  PVSPRMSSLLTSPSGIMAGQSWSTAAFMLSDSNTKSTTLDFLVPRPSVSVCHAWCARMVK 75

Query: 163 FVG 166
            VG
Sbjct: 76  LVG 78

[Close]
BLAST of CmaCh04G002210 vs. TrEMBL
Match: A0A0A9VLF4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-10
Identity = 46/116 (39.66%), Postives = 55/116 (47.41%), Query Frame = 1 

Query: 110 RRFTSPRVISAGHLWPTAAFRASVSNTNRITFDFFVPRPNVRLCQAWCARIVKFVGRNTA 169
           RR TSP   + G     AAF A+ S T     +F VPRP+VR+C AWCAR+ K VG   A
Sbjct: 3   RRPTSPSGTTCGQAASAAAFMAADSKTKTAALEFLVPRPSVRVCHAWCARMAKLVGM-YA 62

Query: 170 VELNGRRFWLLLSLLPSWCGGRESSWRNSRGQARRIVKDLTTNWAPNRRPLTAVDG 226
           V +                G       +S G ARR V    T  AP RRPLT+  G
Sbjct: 63  VVVGANDSGPPSPPAAVGAGAARRRCGSSSGAARRTVSARVTICAPKRRPLTSAHG 117

[Close]
BLAST of CmaCh04G002210 vs. TrEMBL
Match: A0A0A9VGE2_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-06
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1 

Query: 110 RRFTSPRVISAGHLWPTAAFRASVSNTNRITFDFFVPRPNVRLCQAWCARIVKFVG 166
           RR TSP   + G     AAF A+ S T     +F VPRP+VR+C AWCAR+ K VG
Sbjct: 3   RRPTSPSGTTCGQAASAAAFMAADSKTKTAALEFLVPRPSVRVCHAWCARMAKLVG 58

[Close]
BLAST of CmaCh04G002210 vs. TrEMBL
Match: A0A0A0KQX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517125 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.2e-06
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 190 GRESSWRNSRGQARRIVKDLTTNWAPNRRPLTAVDGLKEKS 231
           G+E S R+S+G ARRIVKDLT NW PN RP T+  GLKEKS
Sbjct: 20  GKERSRRSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKS 60

The following BLAST results are available for this feature:
BLAST of CmaCh04G002210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G002210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9MTX3_ARUDO2.3e-1260.32Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9VLF4_ARUDO2.8e-1039.66Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A9VGE2_ARUDO4.2e-0650.00Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A0A0KQX9_CUCSA9.2e-0668.29Uncharacterized protein OS=Cucumis sativus GN=Csa_5G517125 PE=4 SV=1[more]
BLAST of CmaCh04G002210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G002210 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G002210.1CmaCh04G002210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G002210Cucumber (Gy14) v2cgybcmaB411
CmaCh04G002210Cucumber (Gy14) v2cgybcmaB548
CmaCh04G002210Cucumber (Gy14) v2cgybcmaB674
CmaCh04G002210Cucumber (Gy14) v2cgybcmaB685
CmaCh04G002210Melon (DHL92) v3.6.1cmamedB718
CmaCh04G002210Melon (DHL92) v3.6.1cmamedB738
CmaCh04G002210Melon (DHL92) v3.6.1cmamedB770
CmaCh04G002210Melon (DHL92) v3.6.1cmamedB800
CmaCh04G002210Silver-seed gourdcarcmaB0427
CmaCh04G002210Silver-seed gourdcarcmaB0115
CmaCh04G002210Silver-seed gourdcarcmaB0371
CmaCh04G002210Silver-seed gourdcarcmaB0949
CmaCh04G002210Cucumber (Chinese Long) v3cmacucB0883
CmaCh04G002210Cucumber (Chinese Long) v3cmacucB0830
CmaCh04G002210Cucumber (Chinese Long) v3cmacucB0850
CmaCh04G002210Cucumber (Chinese Long) v3cmacucB0892
CmaCh04G002210Cucumber (Chinese Long) v3cmacucB0915
CmaCh04G002210Watermelon (97103) v2cmawmbB720
CmaCh04G002210Watermelon (97103) v2cmawmbB743
CmaCh04G002210Watermelon (97103) v2cmawmbB747
CmaCh04G002210Watermelon (97103) v2cmawmbB751
CmaCh04G002210Watermelon (97103) v2cmawmbB794
CmaCh04G002210Watermelon (97103) v2cmawmbB781
CmaCh04G002210Wax gourdcmawgoB0824
CmaCh04G002210Wax gourdcmawgoB0845
CmaCh04G002210Wax gourdcmawgoB0878
CmaCh04G002210Wax gourdcmawgoB0880
CmaCh04G002210Wax gourdcmawgoB0894
CmaCh04G002210Cucurbita maxima (Rimu)cmacmaB234
CmaCh04G002210Cucurbita maxima (Rimu)cmacmaB319
CmaCh04G002210Cucurbita maxima (Rimu)cmacmaB486
CmaCh04G002210Cucurbita maxima (Rimu)cmacmaB514
CmaCh04G002210Cucurbita maxima (Rimu)cmacmaB531
CmaCh04G002210Cucurbita maxima (Rimu)cmacmaB547
CmaCh04G002210Cucumber (Gy14) v1cgycmaB0471
CmaCh04G002210Cucurbita moschata (Rifu)cmacmoB719
CmaCh04G002210Cucurbita moschata (Rifu)cmacmoB689
CmaCh04G002210Cucurbita moschata (Rifu)cmacmoB722
CmaCh04G002210Cucurbita moschata (Rifu)cmacmoB725
CmaCh04G002210Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G002210Cucurbita moschata (Rifu)cmacmoB730
CmaCh04G002210Wild cucumber (PI 183967)cmacpiB696
CmaCh04G002210Wild cucumber (PI 183967)cmacpiB726
CmaCh04G002210Wild cucumber (PI 183967)cmacpiB757
CmaCh04G002210Wild cucumber (PI 183967)cmacpiB763
CmaCh04G002210Cucumber (Chinese Long) v2cmacuB719
CmaCh04G002210Cucumber (Chinese Long) v2cmacuB747
CmaCh04G002210Cucumber (Chinese Long) v2cmacuB754
CmaCh04G002210Melon (DHL92) v3.5.1cmameB631
CmaCh04G002210Melon (DHL92) v3.5.1cmameB654
CmaCh04G002210Melon (DHL92) v3.5.1cmameB665
CmaCh04G002210Melon (DHL92) v3.5.1cmameB713
CmaCh04G002210Watermelon (Charleston Gray)cmawcgB606
CmaCh04G002210Watermelon (Charleston Gray)cmawcgB650
CmaCh04G002210Watermelon (Charleston Gray)cmawcgB674
CmaCh04G002210Watermelon (97103) v1cmawmB650
CmaCh04G002210Watermelon (97103) v1cmawmB679
CmaCh04G002210Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G002210Cucurbita pepo (Zucchini)cmacpeB722
CmaCh04G002210Cucurbita pepo (Zucchini)cmacpeB738
CmaCh04G002210Cucurbita pepo (Zucchini)cmacpeB751
CmaCh04G002210Bottle gourd (USVL1VR-Ls)cmalsiB630
CmaCh04G002210Bottle gourd (USVL1VR-Ls)cmalsiB643
CmaCh04G002210Bottle gourd (USVL1VR-Ls)cmalsiB646
CmaCh04G002210Bottle gourd (USVL1VR-Ls)cmalsiB649
CmaCh04G002210Bottle gourd (USVL1VR-Ls)cmalsiB661
CmaCh04G002210Bottle gourd (USVL1VR-Ls)cmalsiB677