CmaCh03G014170 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G014170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	E3 ubiquitin-protein ligase arkadia-A, putative
Location	Cma_Chr03 : 8889834 .. 8890229 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTAACAACACCAACAGCAACAATGGACGACCCCCATAAGCTTCAGAACCTACCCTCTTTCAAACTCTCCCGCTACTCCTCTACCGTCCGAGACTCCGACGCCGGTGATGACCTCCGCTACACCAGCTTGAAGGACATTCTTCTGAACTCCCCGTCCTACAGCGGCGTTAATGAGTTCAACGAGTTCAATTTGTCGAACATTACGATCCGAAACGAGCTCGTGAAAAGGGCCGCGTCGGCGTACCTTCAATCGGCGGCGATCTTGGTCGGCCGAAATGAGAGCTGTTTCGTGGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGCTCCCGTTGGTGTGATTGCTTTCCCCGCTTTTTTGGTTTCTTTAGGTTCGCCTTTTAG

mRNA sequence

ATGAATCTAACAACACCAACAGCAACAATGGACGACCCCCATAAGCTTCAGAACCTACCCTCTTTCAAACTCTCCCGCTACTCCTCTACCGTCCGAGACTCCGACGCCGGTGATGACCTCCGCTACACCAGCTTGAAGGACATTCTTCTGAACTCCCCGTCCTACAGCGGCGTTAATGAGTTCAACGAGTTCAATTTGTCGAACATTACGATCCGAAACGAGCTCGTGAAAAGGGCCGCGTCGGCGTACCTTCAATCGGCGGCGATCTTGGTCGGCCGAAATGAGAGCTGTTTCGTGGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGCTCCCGTTGGTGTGATTGCTTTCCCCGCTTTTTTGGTTTCTTTAGGTTCGCCTTTTAG

Coding sequence (CDS)

ATGAATCTAACAACACCAACAGCAACAATGGACGACCCCCATAAGCTTCAGAACCTACCCTCTTTCAAACTCTCCCGCTACTCCTCTACCGTCCGAGACTCCGACGCCGGTGATGACCTCCGCTACACCAGCTTGAAGGACATTCTTCTGAACTCCCCGTCCTACAGCGGCGTTAATGAGTTCAACGAGTTCAATTTGTCGAACATTACGATCCGAAACGAGCTCGTGAAAAGGGCCGCGTCGGCGTACCTTCAATCGGCGGCGATCTTGGTCGGCCGAAATGAGAGCTGTTTCGTGGGATTCTGGGAGAGGCTTAGGATCAAACTCGCCGCCCTCCGCTCCCGTTGGTGTGATTGCTTTCCCCGCTTTTTTGGTTTCTTTAGGTTCGCCTTTTAG

Protein sequence

MNLTTPTATMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCFPRFFGFFRFAF

Homology

[Close]

BLAST of CmaCh03G014170 vs. TrEMBL
Match: A0A0A0KKP9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524030 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.2e-56
Identity = 113/130 (86.92%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 1   MNLTTPTATMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNE 60
           MNLT  T TM+DPH+LQN+PSFKLSRYSS+ RDSDA DDLRYTSLKDILLNSPSYSGVN+
Sbjct: 1   MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVND 60

Query: 61  FNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCF 120
           FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF
Sbjct: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120

Query: 121 PRFFGFFRFA 131
            R FGFF FA
Sbjct: 121 HRIFGFFSFA 129

[Close]

BLAST of CmaCh03G014170 vs. TrEMBL
Match: K7KQ75_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 64/118 (54.24%), Postives = 83/118 (70.34%), Query Frame = 1


Query: 2   NLTTPTATMD-DPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPS--YSGV 61
           N+T    TM+    ++Q+  S  + R SS  RDSD  ++L+YTSLKDI+ N+P+  Y  +
Sbjct: 56  NVTWLLLTMETQTGEIQSTSSLGIPRISSVARDSDLIENLQYTSLKDIICNTPARYYLTL 115

Query: 62  NEFNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRW 117
            E NEF+ S I IRNELVKRAAS YLQSAA+LV RN++CFV FWERL+ + AA  SRW
Sbjct: 116 YEGNEFD-STIAIRNELVKRAASVYLQSAALLVTRNQNCFVSFWERLKNR-AASYSRW 171

[Close]

BLAST of CmaCh03G014170 vs. TrEMBL
Match: A0A0R0JVD6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G142600 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 15  KLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPS--YSGVNEFNEFNLSNITIR 74
           ++Q+  S  + R SS  RDSD  ++L+YTSLKDI+ N+P+  Y  + E NEF+ S I IR
Sbjct: 7   EIQSTSSLGIPRISSVARDSDLIENLQYTSLKDIICNTPARYYLTLYEGNEFD-STIAIR 66

Query: 75  NELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRW 117
           NELVKRAAS YLQSAA+LV RN++CFV FWERL+ + AA  SRW
Sbjct: 67  NELVKRAASVYLQSAALLVTRNQNCFVSFWERLKNR-AASYSRW 108

[Close]

BLAST of CmaCh03G014170 vs. TrEMBL
Match: A0A0B2SND1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_030060 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 15  KLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPS--YSGVNEFNEFNLSNITIR 74
           ++Q+  S  + R SS  RDSD  ++L+YTSLKDI+ N+P+  Y  + E NEF+ S I IR
Sbjct: 7   EIQSTSSLGIPRISSVARDSDLIENLQYTSLKDIICNTPARYYLTLYEGNEFD-STIAIR 66

Query: 75  NELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRW 117
           NELVKRAAS YLQSAA+LV RN++CFV FWERL+ + AA  SRW
Sbjct: 67  NELVKRAASVYLQSAALLVTRNQNCFVSFWERLKNR-AASYSRW 108

[Close]

BLAST of CmaCh03G014170 vs. TrEMBL
Match: K7L5T2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-20
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 15  KLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPS--YSGVNEFNEFNLSNITIR 74
           ++Q+  S ++ R SS  RDSD  + L+YTSLKDI+ N+P+  Y  + E N+FN S + IR
Sbjct: 7   EIQSTRSLRIPRISSVARDSDIIETLQYTSLKDIICNTPTSYYLTLYEENDFN-STLAIR 66

Query: 75  NELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRW 117
           NELVKRAAS YLQSAA+L+ +NE+CFV FWERL+ + AA  SRW
Sbjct: 67  NELVKRAASVYLQSAALLITKNENCFVTFWERLKNR-AASYSRW 108

[Close]

BLAST of CmaCh03G014170 vs. TAIR10
Match: AT4G18395.1 (AT4G18395.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.5e-07
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 1


Query: 31  VRDSDAGDDLRYTSLKDILLNS---------PSYSGVNE----FNEFNLSNITIRNELVK 90
           + D +  ++L+YTSLKD++ +S         P YS  ++     +E + SNI I NELVK
Sbjct: 10  ISDDNDQNNLQYTSLKDVISSSDGFGSLFCHPQYSVPSQDGFLLSEMDSSNIAISNELVK 69

Query: 91  RAASAYLQSAAILVGRNESCFVGF 102
           RAAS Y+QS+ I++  + + F  F
Sbjct: 70  RAASMYVQSSMIVIAPDTNWFQRF 93

[Close]

BLAST of CmaCh03G014170 vs. NCBI nr
Match: gi|659078220|ref|XP_008439611.1| (PREDICTED: uncharacterized protein LOC103484353 [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-57
Identity = 115/130 (88.46%), Postives = 120/130 (92.31%), Query Frame = 1


Query: 1   MNLTTPTATMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNE 60
           MNLTT T TM+D HKLQN+PSFKLSRYSS+ RDSDAGDDLRYTSLKDILLNSPSYSGVN+
Sbjct: 1   MNLTTTTTTMEDSHKLQNIPSFKLSRYSSSARDSDAGDDLRYTSLKDILLNSPSYSGVND 60

Query: 61  FNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCF 120
           FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF
Sbjct: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120

Query: 121 PRFFGFFRFA 131
            R FGFF FA
Sbjct: 121 HRIFGFFSFA 130

[Close]

BLAST of CmaCh03G014170 vs. NCBI nr
Match: gi|778721438|ref|XP_011658298.1| (PREDICTED: uncharacterized protein LOC105435970 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 113/130 (86.92%), Postives = 119/130 (91.54%), Query Frame = 1


Query: 1   MNLTTPTATMDDPHKLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPSYSGVNE 60
           MNLT  T TM+DPH+LQN+PSFKLSRYSS+ RDSDA DDLRYTSLKDILLNSPSYSGVN+
Sbjct: 1   MNLTA-TTTMEDPHRLQNIPSFKLSRYSSSARDSDASDDLRYTSLKDILLNSPSYSGVND 60

Query: 61  FNEFNLSNITIRNELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRWCDCF 120
           FNEFN SNI+IRNELVKRAASAYLQSAAILV RNES FVGFWERLRIKLAALRSRWCDCF
Sbjct: 61  FNEFNSSNISIRNELVKRAASAYLQSAAILVSRNESGFVGFWERLRIKLAALRSRWCDCF 120

Query: 121 PRFFGFFRFA 131
            R FGFF FA
Sbjct: 121 HRIFGFFSFA 129

[Close]

BLAST of CmaCh03G014170 vs. NCBI nr
Match: gi|955322551|ref|XP_014631533.1| (PREDICTED: uncharacterized protein LOC106798865 [Glycine max])

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 15  KLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPS--YSGVNEFNEFNLSNITIR 74
           ++Q+  S  + R SS  RDSD  ++L+YTSLKDI+ N+P+  Y  + E NEF+ S I IR
Sbjct: 7   EIQSTSSLGIPRISSVARDSDLIENLQYTSLKDIICNTPARYYLTLYEGNEFD-STIAIR 66

Query: 75  NELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRW 117
           NELVKRAAS YLQSAA+LV RN++CFV FWERL+ + AA  SRW
Sbjct: 67  NELVKRAASVYLQSAALLVTRNQNCFVSFWERLKNR-AASYSRW 108

[Close]

BLAST of CmaCh03G014170 vs. NCBI nr
Match: gi|947093993|gb|KRH42578.1| (hypothetical protein GLYMA_08G098600 [Glycine max])

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 15  KLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPS--YSGVNEFNEFNLSNITIR 74
           ++Q+  S ++ R SS  RDSD  + L+YTSLKDI+ N+P+  Y  + E N+FN S + IR
Sbjct: 23  EIQSTRSLRIPRISSVARDSDIIETLQYTSLKDIICNTPTSYYLTLYEENDFN-STLAIR 82

Query: 75  NELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRW 117
           NELVKRAAS YLQSAA+L+ +NE+CFV FWERL+ + AA  SRW
Sbjct: 83  NELVKRAASVYLQSAALLITKNENCFVTFWERLKNR-AASYSRW 124

[Close]

BLAST of CmaCh03G014170 vs. NCBI nr
Match: gi|571474849|ref|XP_006586364.1| (PREDICTED: uncharacterized protein LOC102667419 [Glycine max])

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 58/104 (55.77%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 15  KLQNLPSFKLSRYSSTVRDSDAGDDLRYTSLKDILLNSPS--YSGVNEFNEFNLSNITIR 74
           ++Q+  S ++ R SS  RDSD  + L+YTSLKDI+ N+P+  Y  + E N+FN S + IR
Sbjct: 7   EIQSTRSLRIPRISSVARDSDIIETLQYTSLKDIICNTPTSYYLTLYEENDFN-STLAIR 66

Query: 75  NELVKRAASAYLQSAAILVGRNESCFVGFWERLRIKLAALRSRW 117
           NELVKRAAS YLQSAA+L+ +NE+CFV FWERL+ + AA  SRW
Sbjct: 67  NELVKRAASVYLQSAALLITKNENCFVTFWERLKNR-AASYSRW 108

The following BLAST results are available for this feature:

BLAST of CmaCh03G014170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G014170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKP9_CUCSA	7.2e-56	86.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524030 PE=4 SV=1	[more]
K7KQ75_SOYBN	1.3e-20	54.24	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0JVD6_SOYBN	1.7e-20	57.69	Uncharacterized protein OS=Glycine max GN=GLYMA_05G142600 PE=4 SV=1	[more]
A0A0B2SND1_GLYSO	1.7e-20	57.69	Uncharacterized protein OS=Glycine soja GN=glysoja_030060 PE=4 SV=1	[more]
K7L5T2_SOYBN	2.9e-20	55.77	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]

BLAST of CmaCh03G014170 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18395.1	2.5e-07	38.10	unknown protein	[more]

BLAST of CmaCh03G014170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078220\|ref\|XP_008439611.1\|	1.1e-57	88.46	PREDICTED: uncharacterized protein LOC103484353 [Cucumis melo]	[more]
gi\|778721438\|ref\|XP_011658298.1\|	1.0e-55	86.92	PREDICTED: uncharacterized protein LOC105435970 [Cucumis sativus]	[more]
gi\|955322551\|ref\|XP_014631533.1\|	2.4e-20	57.69	PREDICTED: uncharacterized protein LOC106798865 [Glycine max]	[more]
gi\|947093993\|gb\|KRH42578.1\|	4.1e-20	55.77	hypothetical protein GLYMA_08G098600 [Glycine max]	[more]
gi\|571474849\|ref\|XP_006586364.1\|	4.1e-20	55.77	PREDICTED: uncharacterized protein LOC102667419 [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G014170.1	CmaCh03G014170.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G014170	Cla009787	Watermelon (97103) v1	cmawmB628
CmaCh03G014170	Csa6G524030	Cucumber (Chinese Long) v2	cmacuB678
CmaCh03G014170	MELO3C007119	Melon (DHL92) v3.5.1	cmameB618
CmaCh03G014170	ClCG01G024780	Watermelon (Charleston Gray)	cmawcgB576
CmaCh03G014170	CSPI06G36450	Wild cucumber (PI 183967)	cmacpiB686
CmaCh03G014170	CmoCh03G014120	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G014170	Lsi01G001310	Bottle gourd (USVL1VR-Ls)	cmalsiB602
CmaCh03G014170	Cp4.1LG10g06170	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G014170	MELO3C007119.2	Melon (DHL92) v3.6.1	cmamedB704
CmaCh03G014170	CsaV3_6G051900	Cucumber (Chinese Long) v3	cmacucB0807
CmaCh03G014170	Cla97C01G024730	Watermelon (97103) v2	cmawmbB667
CmaCh03G014170	Bhi03G000094	Wax gourd	cmawgoB0789
CmaCh03G014170	Carg19284	Silver-seed gourd	carcmaB0413

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G014170	Cucumber (Gy14) v2	cgybcmaB830
CmaCh03G014170	Melon (DHL92) v3.6.1	cmamedB677
CmaCh03G014170	Silver-seed gourd	carcmaB0587
CmaCh03G014170	Silver-seed gourd	carcmaB1023
CmaCh03G014170	Watermelon (97103) v2	cmawmbB682
CmaCh03G014170	Wax gourd	cmawgoB0808
CmaCh03G014170	Cucurbita maxima (Rimu)	cmacmaB232
CmaCh03G014170	Cucurbita maxima (Rimu)	cmacmaB397
CmaCh03G014170	Cucurbita maxima (Rimu)	cmacmaB528
CmaCh03G014170	Cucumber (Gy14) v1	cgycmaB0045
CmaCh03G014170	Cucurbita moschata (Rifu)	cmacmoB638
CmaCh03G014170	Cucurbita moschata (Rifu)	cmacmoB644
CmaCh03G014170	Cucurbita moschata (Rifu)	cmacmoB672
CmaCh03G014170	Melon (DHL92) v3.5.1	cmameB592
CmaCh03G014170	Watermelon (Charleston Gray)	cmawcgB583
CmaCh03G014170	Watermelon (97103) v1	cmawmB622
CmaCh03G014170	Cucurbita pepo (Zucchini)	cmacpeB653
CmaCh03G014170	Cucurbita pepo (Zucchini)	cmacpeB667
CmaCh03G014170	Cucurbita pepo (Zucchini)	cmacpeB675
CmaCh03G014170	Bottle gourd (USVL1VR-Ls)	cmalsiB606