CmaCh03G010070 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G010070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cma_Chr03 : 7056713 .. 7057105 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTTCATGCGAATAATGTCCCTCAAAACAGCAAAAGAAATCTGGGATTATTTCAAGGCTGAATATGAAGGAGATGAGAGGATTTGTGGAATGAAAGTCCTGAGTTTGATTAGGAATTTTGAGTTGCAGAAGATGAAGGAGTCAGAGTCGGTGAAAGAGTACTTTGACAAACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCTAGGATCGTTGAAAAGTTGTTAGTCACTATTCCAGAGAAGTTTGAAGCCACCATTACTACTCTGGAGAACACCAAAGATCTGTCAAAGATTTCTCTTACAGAACTCTTGAATGCTTTACAAAGCACAAGAGCAAAGGAGGTCTATGAGGCAAGAAGGGGTGATTGA

mRNA sequence

ATGATCTTCATGCGAATAATGTCCCTCAAAACAGCAAAAGAAATCTGGGATTATTTCAAGGCTGAATATGAAGGAGATGAGAGGATTTGTGGAATGAAAGTCCTGAGTTTGATTAGGAATTTTGAGTTGCAGAAGATGAAGGAGTCAGAGTCGGTGAAAGAGTACTTTGACAAACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCTAGGATCGTTGAAAAGTTGTTAGTCACTATTCCAGAGAAGTTTGAAGCCACCATTACTACTCTGGAGAACACCAAAGATCTGTCAAAGATTTCTCTTACAGAACTCTTGAATGCTTTACAAAGCACAAGAGCAAAGGAGGTCTATGAGGCAAGAAGGGGTGATTGA

Coding sequence (CDS)

ATGATCTTCATGCGAATAATGTCCCTCAAAACAGCAAAAGAAATCTGGGATTATTTCAAGGCTGAATATGAAGGAGATGAGAGGATTTGTGGAATGAAAGTCCTGAGTTTGATTAGGAATTTTGAGTTGCAGAAGATGAAGGAGTCAGAGTCGGTGAAAGAGTACTTTGACAAACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCTAGGATCGTTGAAAAGTTGTTAGTCACTATTCCAGAGAAGTTTGAAGCCACCATTACTACTCTGGAGAACACCAAAGATCTGTCAAAGATTTCTCTTACAGAACTCTTGAATGCTTTACAAAGCACAAGAGCAAAGGAGGTCTATGAGGCAAGAAGGGGTGATTGA

Protein sequence

MIFMRIMSLKTAKEIWDYFKAEYEGDERICGMKVLSLIRNFELQKMKESESVKEYFDKLLSIANKVRLLGSVLNDSRIVEKLLVTIPEKFEATITTLENTKDLSKISLTELLNALQSTRAKEVYEARRGD

Homology

[Close]

BLAST of CmaCh03G010070 vs. TrEMBL
Match: A0A0V0H1J0_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.1e-43
Identity = 91/127 (71.65%), Postives = 109/127 (85.83%), Query Frame = 1


Query: 2   IFMRIMSLKTAKEIWDYFKAEYEGDERICGMKVLSLIRNFELQKMKESESVKEYFDKLLS 61
           IF RIMSLK+AKE+WDY K EYEGDERI GM+VL+L+R FELQ+MKESE++KEY D+LL+
Sbjct: 74  IFTRIMSLKSAKEVWDYLKTEYEGDERIRGMQVLNLVREFELQRMKESETIKEYSDRLLN 133

Query: 62  IANKVRLLGSVLNDSRIVEKLLVTIPEKFEATITTLENTKDLSKISLTELLNALQSTRAK 121
           IAN+VRLLGS  NDSRIVEK+LVT+PEKFEAT+TTLENTKDLSKI+L ELL+A Q+   +
Sbjct: 134 IANRVRLLGSTFNDSRIVEKILVTVPEKFEATVTTLENTKDLSKITLAELLSAFQAQEQR 193

Query: 122 EVYEARR 129
            V    R
Sbjct: 194 RVMRQER 200

[Close]

BLAST of CmaCh03G010070 vs. TrEMBL
Match: M1B1W5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013513 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-41
Identity = 89/122 (72.95%), Postives = 108/122 (88.52%), Query Frame = 1


Query: 2   IFMRIMSLKTAKEIWDYFKAEYEGDERICGMKVLSLIRNFELQKMKESESVKEYFDKLLS 61
           IF RIMSLK+AK IWDY K EYEGDE I GM+VL+LIR+FE+QKMKE+E++K+Y ++LL+
Sbjct: 57  IFTRIMSLKSAKAIWDYLKVEYEGDEMIRGMQVLNLIRDFEIQKMKETETIKDYSERLLN 116

Query: 62  IANKVRLLGSVLNDSRIVEKLLVTIPEKFEATITTLENTKDLSKISLTELLNALQSTRAK 121
           IAN+VRLLGSVLNDSRIVEK+LVT+PE+FEATI TLENTKDLSKI+  ELLNALQ+   +
Sbjct: 117 IANRVRLLGSVLNDSRIVEKILVTVPERFEATINTLENTKDLSKITFAELLNALQAHEQR 176

Query: 122 EV 124
            V
Sbjct: 177 RV 178

[Close]

BLAST of CmaCh03G010070 vs. TrEMBL
Match: U5FMW9_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s06240g PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-39
Identity = 85/122 (69.67%), Postives = 109/122 (89.34%), Query Frame = 1


Query: 2   IFMRIMSLKTAKEIWDYFKAEYEGDERICGMKVLSLIRNFELQKMKESESVKEYFDKLLS 61
           IF RIMSLKTAKEIW++ K EYEGDERI GM+VL+L+R+FELQKMK++ES+KEY D+LL+
Sbjct: 495 IFTRIMSLKTAKEIWEFLKTEYEGDERIQGMQVLNLMRDFELQKMKKTESIKEYSDRLLN 554

Query: 62  IANKVRLLGSVLNDSRIVEKLLVTIPEKFEATITTLENTKDLSKISLTELLNALQSTRAK 121
           IA+++ LLGS L +SRIV+K+LVTIPE FEATIT+LENTKD+SKI+LTE+LNALQ+   +
Sbjct: 555 IASRISLLGSSLPESRIVQKILVTIPEIFEATITSLENTKDMSKITLTEMLNALQAQEQR 614

Query: 122 EV 124
            +
Sbjct: 615 RI 616

[Close]

BLAST of CmaCh03G010070 vs. TrEMBL
Match: V4UAJ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017902mg PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-39
Identity = 86/116 (74.14%), Postives = 103/116 (88.79%), Query Frame = 1


Query: 2   IFMRIMSLKTAKEIWDYFKAEYEGDERICGMKVLSLIRNFELQKMKESESVKEYFDKLLS 61
           IF RIMSLK+AK IWDY K+EYEGDERI GM+ L+LI  FELQ+MK+SE++K+Y D+LLS
Sbjct: 44  IFTRIMSLKSAKAIWDYLKSEYEGDERIKGMQALNLISEFELQRMKDSETIKDYSDRLLS 103

Query: 62  IANKVRLLGSVLNDSRIVEKLLVTIPEKFEATITTLENTKDLSKISLTELLNALQS 118
           IANKVRLL S   DSRIV+K+LVT+PE++EATITT+ENTKDLSKISL ELLNALQ+
Sbjct: 104 IANKVRLLRSEFTDSRIVQKILVTVPERYEATITTVENTKDLSKISLAELLNALQA 159

[Close]

BLAST of CmaCh03G010070 vs. TrEMBL
Match: U5GSJ8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04290g PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.0e-38
Identity = 84/127 (66.14%), Postives = 103/127 (81.10%), Query Frame = 1


Query: 2   IFMRIMSLKTAKEIWDYFKAEYEGDERICGMKVLSLIRNFELQKMKESESVKEYFDKLLS 61
           IF RIMSLK+AK++WDY K EY GDERI GM+ L+LIR FELQ+MK+SE+ KEY DKLL 
Sbjct: 537 IFTRIMSLKSAKDVWDYLKKEYAGDERIRGMQSLNLIREFELQRMKDSETTKEYSDKLLG 596

Query: 62  IANKVRLLGSVLNDSRIVEKLLVTIPEKFEATITTLENTKDLSKISLTELLNALQSTRAK 121
           I NKVRLLG+  +D RIVEK+LVT+PE++EA+ITTLENTKDLSKI L EL+NALQ+   +
Sbjct: 597 IVNKVRLLGTYFSDCRIVEKILVTVPERYEASITTLENTKDLSKIILAELINALQAQEQR 656

Query: 122 EVYEARR 129
            +    R
Sbjct: 657 RLMRQDR 663

[Close]

BLAST of CmaCh03G010070 vs. NCBI nr
Match: gi|823145289|ref|XP_012472533.1| (PREDICTED: uncharacterized protein LOC105789716 [Gossypium raimondii])

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-48
Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = 1


Query: 1   MIFMRIMSLKTAKEIWDYFKAEYEGDERICGMKVLSLIRNFELQKMKESESVKEYFDKLL 60
           MIF RIMSLK+A EIWDY KAEYEGDERICGMKVL+LIR+FELQKMKESESVKEY D+LL
Sbjct: 82  MIFTRIMSLKSANEIWDYLKAEYEGDERICGMKVLNLIRDFELQKMKESESVKEYSDRLL 141

Query: 61  SIANKVRLLGSVLNDSRIVEKLLVTIPEKFEATITTLENTKDLSKISLTELLNALQS 118
           SIANKVRLLGS LNDSRI+EKLLVT+PEKFEATITTLENTKDLSKISL ELLNALQ+
Sbjct: 142 SIANKVRLLGSELNDSRIMEKLLVTVPEKFEATITTLENTKDLSKISLAELLNALQA 198

[Close]

BLAST of CmaCh03G010070 vs. NCBI nr
Match: gi|823180845|ref|XP_012488003.1| (PREDICTED: uncharacterized protein LOC105801218 [Gossypium raimondii])

HSP 1 Score: 198.0 bits (502), Expect = 1.0e-47
Identity = 105/117 (89.74%), Postives = 111/117 (94.87%), Query Frame = 1


Query: 1   MIFMRIMSLKTAKEIWDYFKAEYEGDERICGMKVLSLIRNFELQKMKESESVKEYFDKLL 60
           MIF RIMSLK+AKEIWDY KAEYEGDERI GMKVL+LIR+FELQKMKESESVKEY D+LL
Sbjct: 82  MIFTRIMSLKSAKEIWDYLKAEYEGDERIRGMKVLNLIRDFELQKMKESESVKEYSDRLL 141

Query: 61  SIANKVRLLGSVLNDSRIVEKLLVTIPEKFEATITTLENTKDLSKISLTELLNALQS 118
           SIANKVRLLGS LNDSRIVEKLLVT+PEKFEATITTLENTKDLSKISL ELLNALQ+
Sbjct: 142 SIANKVRLLGSELNDSRIVEKLLVTVPEKFEATITTLENTKDLSKISLAELLNALQA 198

[Close]

BLAST of CmaCh03G010070 vs. NCBI nr
Match: gi|823166118|ref|XP_012483005.1| (PREDICTED: uncharacterized protein LOC105797604 [Gossypium raimondii])

HSP 1 Score: 196.1 bits (497), Expect = 3.9e-47
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 1


Query: 1   MIFMRIMSLKTAKEIWDYFKAEYEGDERICGMKVLSLIRNFELQKMKESESVKEYFDKLL 60
           MIF RIM LK+AKEIWDY KAEYEGDERI GMKVL+LIR+FELQKMKESESVKEY D+LL
Sbjct: 82  MIFTRIMYLKSAKEIWDYLKAEYEGDERIRGMKVLNLIRDFELQKMKESESVKEYSDRLL 141

Query: 61  SIANKVRLLGSVLNDSRIVEKLLVTIPEKFEATITTLENTKDLSKISLTELLNALQS 118
           SIANKVRLLGS LNDSRIVEKLLVT+PEKFEAT TTLENTKDLSKISLTELLNALQ+
Sbjct: 142 SIANKVRLLGSELNDSRIVEKLLVTVPEKFEATFTTLENTKDLSKISLTELLNALQA 198

[Close]

BLAST of CmaCh03G010070 vs. NCBI nr
Match: gi|823241747|ref|XP_012453556.1| (PREDICTED: uncharacterized protein LOC105775599 [Gossypium raimondii])

HSP 1 Score: 195.7 bits (496), Expect = 5.1e-47
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 1


Query: 1   MIFMRIMSLKTAKEIWDYFKAEYEGDERICGMKVLSLIRNFELQKMKESESVKEYFDKLL 60
           MIF RIMSLK+AKEIWDY KAEYEGDERI GMKVL+LIR+FELQKMKESESVKEY D+LL
Sbjct: 315 MIFTRIMSLKSAKEIWDYLKAEYEGDERIRGMKVLNLIRDFELQKMKESESVKEYSDRLL 374

Query: 61  SIANKVRLLGSVLNDSRIVEKLLVTIPEKFEATITTLENTKDLSKISLTELLNALQS 118
           SIANKVRLLG  LNDSRIVEKLLVT+PEKFEATITTLENTKDLSKISL ELLNALQ+
Sbjct: 375 SIANKVRLLGFELNDSRIVEKLLVTVPEKFEATITTLENTKDLSKISLAELLNALQA 431

[Close]

BLAST of CmaCh03G010070 vs. NCBI nr
Match: gi|823138359|ref|XP_012469049.1| (PREDICTED: uncharacterized protein LOC105787153 [Gossypium raimondii])

HSP 1 Score: 192.2 bits (487), Expect = 5.7e-46
Identity = 105/130 (80.77%), Postives = 113/130 (86.92%), Query Frame = 1


Query: 1   MIFMRIMSLKTAKEIWDYFKAEYEGDERICGMKVLSLIRNFELQKMKESESVKEYFDKLL 60
           MIF RIMSLK+AKEIWDY KAEYEGDERI GMKVL+LIR+FELQKMKESESVKEY D+LL
Sbjct: 82  MIFTRIMSLKSAKEIWDYLKAEYEGDERIRGMKVLNLIRDFELQKMKESESVKEYSDRLL 141

Query: 61  SIANKVRLLGSVLNDSRIVEKLLVTIPEKFEATITTLENTKDLSKISLTELLNALQSTRA 120
           SIANKVRLLGS LNDSRIVEKLLVT+PEKFEATITTLENTKDLSKISL          RA
Sbjct: 142 SIANKVRLLGSELNDSRIVEKLLVTVPEKFEATITTLENTKDLSKISL---------ARA 201

Query: 121 KEVYEARRGD 131
           K+++EAR  D
Sbjct: 202 KKIHEARGSD 202

The following BLAST results are available for this feature:

BLAST of CmaCh03G010070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G010070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0V0H1J0_SOLCH	3.1e-43	71.65	Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1	[more]
M1B1W5_SOLTU	1.7e-41	72.95	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013513 PE=4 SV=1	[more]
U5FMW9_POPTR	2.1e-39	69.67	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0017s06240g P...	[more]
V4UAJ1_9ROSI	2.1e-39	74.14	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017902mg PE=4 SV=1	[more]
U5GSJ8_POPTR	4.0e-38	66.14	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s04290g PE=4 SV=1	[more]

BLAST of CmaCh03G010070 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh03G010070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823145289\|ref\|XP_012472533.1\|	3.6e-48	88.89	PREDICTED: uncharacterized protein LOC105789716 [Gossypium raimondii]	[more]
gi\|823180845\|ref\|XP_012488003.1\|	1.0e-47	89.74	PREDICTED: uncharacterized protein LOC105801218 [Gossypium raimondii]	[more]
gi\|823166118\|ref\|XP_012483005.1\|	3.9e-47	88.89	PREDICTED: uncharacterized protein LOC105797604 [Gossypium raimondii]	[more]
gi\|823241747\|ref\|XP_012453556.1\|	5.1e-47	88.89	PREDICTED: uncharacterized protein LOC105775599 [Gossypium raimondii]	[more]
gi\|823138359\|ref\|XP_012469049.1\|	5.7e-46	80.77	PREDICTED: uncharacterized protein LOC105787153 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0010277	chlorophyllide a oxygenase [overall] activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G010070.1	CmaCh03G010070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..117 score: 2.2
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..119 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G010070	Cucumber (Gy14) v2	cgybcmaB239
CmaCh03G010070	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G010070	Melon (DHL92) v3.6.1	cmamedB683
CmaCh03G010070	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G010070	Silver-seed gourd	carcmaB0254
CmaCh03G010070	Silver-seed gourd	carcmaB0567
CmaCh03G010070	Silver-seed gourd	carcmaB1125
CmaCh03G010070	Cucumber (Chinese Long) v3	cmacucB0777
CmaCh03G010070	Cucumber (Chinese Long) v3	cmacucB0780
CmaCh03G010070	Cucumber (Chinese Long) v3	cmacucB0782
CmaCh03G010070	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G010070	Watermelon (97103) v2	cmawmbB670
CmaCh03G010070	Watermelon (97103) v2	cmawmbB681
CmaCh03G010070	Watermelon (97103) v2	cmawmbB702
CmaCh03G010070	Wax gourd	cmawgoB0782
CmaCh03G010070	Wax gourd	cmawgoB0790
CmaCh03G010070	Cucurbita maxima (Rimu)	cmacmaB063
CmaCh03G010070	Cucurbita maxima (Rimu)	cmacmaB188
CmaCh03G010070	Cucurbita maxima (Rimu)	cmacmaB517
CmaCh03G010070	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh03G010070	Cucumber (Gy14) v1	cgycmaB0231
CmaCh03G010070	Cucumber (Gy14) v1	cgycmaB0641
CmaCh03G010070	Cucurbita moschata (Rifu)	cmacmoB632
CmaCh03G010070	Cucurbita moschata (Rifu)	cmacmoB636
CmaCh03G010070	Cucurbita moschata (Rifu)	cmacmoB646
CmaCh03G010070	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G010070	Cucurbita moschata (Rifu)	cmacmoB662
CmaCh03G010070	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G010070	Wild cucumber (PI 183967)	cmacpiB662
CmaCh03G010070	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G010070	Cucumber (Chinese Long) v2	cmacuB654
CmaCh03G010070	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G010070	Melon (DHL92) v3.5.1	cmameB599
CmaCh03G010070	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G010070	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G010070	Watermelon (Charleston Gray)	cmawcgB598
CmaCh03G010070	Watermelon (Charleston Gray)	cmawcgB604
CmaCh03G010070	Watermelon (97103) v1	cmawmB621
CmaCh03G010070	Watermelon (97103) v1	cmawmB632
CmaCh03G010070	Cucurbita pepo (Zucchini)	cmacpeB679
CmaCh03G010070	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G010070	Cucurbita pepo (Zucchini)	cmacpeB660
CmaCh03G010070	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G010070	Cucurbita pepo (Zucchini)	cmacpeB687
CmaCh03G010070	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G010070	Bottle gourd (USVL1VR-Ls)	cmalsiB613