CmaCh03G009840 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G009840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Eukaryotic initiation factor 4A
Location	Cma_Chr03 : 6938952 .. 6940445 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGGTCACCCTATACAATTTACTGTTTTCAGTATCCTCCATCTTACAGTTTTTGAATACTGCTAAATCGTTTTGACCCTGTGTGGGTCAGTTGTTTTCTGTCATTTGTTCACTTACTTTTACTTTATGGTTAATACGGTCTTAGGAACAAGTTTGTGTTTTTACTTATTTGTGCTAGGGAAAATTACCCCTTTTTCATTTAAATCTTACACTGAGTACATTTTGTCTTCTTCCTTCTTCTTGTCAATACGTTACTCATGTTGGCATACATATGGGGTAGCACCACGCTTTGAATGGATAAGACTTACTTTTTGACTTATATTGATGCAGTGTATTTATTGCTTGTCATCTTCAGTACAGTGACCTTGCTGAAGCAGACCGAGCACTGATATTAGAGAAATTTCAGAAAACAACACGAAGGTGGAGCCAAAAGTTCAGATCTCTATTAGAAGACAAATGTGAGGTTGAGAAAGTAGGAGAAAATCTCACATGATTGTAGTAACAGACGCCTGCCTTCCACTTTTGGCTTCACCTCTTTCTGTCCATGTTTTGATAAATTATGACCTACCAACAGAGAAGGTGCAACAGACCACCCACTTCTAGCAAGATATTGTCTACATTGGCCTGTTACGTATAGTCGTCAAGCTCACGGTTTTAAAACGCGTTTGTTAGGAAGAGGTTTCCACACACTTATAAGGAATGTTTCGTTACCCTCTTTAACCGATGTGAGATTTCACAATCTAACCCACTTGGAGGCACACCGCCCTGTGTTTGACTTTGATACCATTTGTATCAACCCAACTCATCGCTAGTAGATATTGTCCATTTTGGCTCGTTATGTATCACCATCAGGCTCATGGTAAAACTCATTTTTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGATTCGTTCCATCTCTAACCAATGTGGGATCTTCCATAAGGTGTAGTTTTCAGACTACAGGATCGTGAGCTGATAATTTGTAAAAATGAATGGGTAAGACGCCTGCCTTCCTCTTCCTGTTGGTTGATGTGGTACTGATCTTTCTTAAGCAAACTCCTAAAACTAGACATTTGAAAAGTTGTCTGAAGTGAATTCGTAAGCAGATTTTGATTATTGTCACAAATTATTGTTTCTAAACTTCATGTCATTTTTATTGCAGGAAACGTATACGAGGCGCATGACTACCTGCTCAACCTCAGGTTACTTTTATACTGCGAAGGATTATAATATAAGTTGCGCAGTTTAGGTTTCTTCATACACAAGAGTTGCTTCCTTAGCGATTCTACGTAGATGGGATCTTAATCAACATGGTTGTTGGGGGTGAAGTGGTAACTCTCGAAAGCATTGAAGGAAGTAGTGGGCTTGTTATTGCTGAGATGCCCGTTAATGTAAGTGTTTTACTACTTTCTTTGATCTTCATGCGCTTTGATGGATATAAATTTTGCCAAGGAAACCAGTCCCAAAAAATTATTCCTGAATTTTAG

mRNA sequence

ATGACAAGTGTATTTATTGCTTGTCATCTTCAGTACAGTGACCTTGCTGAAGCAGACCGAGCACTGATATTAGAGAAATTTCAGAAAACAACACGAAGGTGGAGCCAAAAGTTCAGATCTCTATTAGAAGACAAATGTGTAGTTTTCAGACTACAGGATCGTGAGCTGATAATTTGTAAAAATGAATGGGAAACGTATACGAGGCGCATGACTACCTGCTCAACCTCAGATGGGATCTTAATCAACATGGTTGTTGGGGGTGAAGTGGTAACTCTCGAAAGCATTGAAGGAAGTAGTGGGCTTGTTATTGCTGAGATGCCCGTTAATGTAAGTGTTTTACTACTTTCTTTGATCTTCATGCGCTTTGATGGATATAAATTTTGCCAAGGAAACCAGTCCCAAAAAATTATTCCTGAATTTTAG

Coding sequence (CDS)

ATGACAAGTGTATTTATTGCTTGTCATCTTCAGTACAGTGACCTTGCTGAAGCAGACCGAGCACTGATATTAGAGAAATTTCAGAAAACAACACGAAGGTGGAGCCAAAAGTTCAGATCTCTATTAGAAGACAAATGTGTAGTTTTCAGACTACAGGATCGTGAGCTGATAATTTGTAAAAATGAATGGGAAACGTATACGAGGCGCATGACTACCTGCTCAACCTCAGATGGGATCTTAATCAACATGGTTGTTGGGGGTGAAGTGGTAACTCTCGAAAGCATTGAAGGAAGTAGTGGGCTTGTTATTGCTGAGATGCCCGTTAATGTAAGTGTTTTACTACTTTCTTTGATCTTCATGCGCTTTGATGGATATAAATTTTGCCAAGGAAACCAGTCCCAAAAAATTATTCCTGAATTTTAG

Protein sequence

MTSVFIACHLQYSDLAEADRALILEKFQKTTRRWSQKFRSLLEDKCVVFRLQDRELIICKNEWETYTRRMTTCSTSDGILINMVVGGEVVTLESIEGSSGLVIAEMPVNVSVLLLSLIFMRFDGYKFCQGNQSQKIIPEF

Homology

[Close]

BLAST of CmaCh03G009840 vs. TrEMBL
Match: A0A0A0KFR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490840 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-26
Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 1


Query: 5   FIACHLQYSDLAEADRALILEKFQKTTRRWSQKFRSLLEDKCVVFRLQDRELIICKNEW- 64
           +I+    YSDLAEADR+LILEKF++TT RWSQKF SL E+KC   ++ ++  +I   +  
Sbjct: 76  YISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLSEEKCEAEKVGEKSHMIVVTDAC 135

Query: 65  -------------------------ETYTRRMTTCSTSDGILINMVVGGEVVTLESIEGS 115
                                    ETY RRMTTCS SDGILINMVVGGEVVTL+SIE S
Sbjct: 136 LPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSASDGILINMVVGGEVVTLKSIEES 195

[Close]

BLAST of CmaCh03G009840 vs. TrEMBL
Match: A0A087GKC2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G247000 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.2e-17
Identity = 61/142 (42.96%), Postives = 82/142 (57.75%), Query Frame = 1


Query: 2   TSVFIACHLQYSDLAEADRALILEKFQKTTRRWSQKFRSLLE------------------ 61
           T  +I+    YSDLAE +R ++LEKF++ T  WSQ+  S +E                  
Sbjct: 71  TLPYISLAALYSDLAERERNMVLEKFRQATINWSQQLNSAVEEGLDESETGKEETKSHLV 130

Query: 62  ---DKCVVF------RLQDRELIICK--NEWETYTRRMTTCSTSDGILINMVVGGEVVTL 115
              D C+         L  R LI  +   + ETYTRR+TTC  S GI+INMVVGGEV TL
Sbjct: 131 VVTDVCLPLLSSGESSLSARVLINYELPTKKETYTRRITTCLASGGIVINMVVGGEVTTL 190

[Close]

BLAST of CmaCh03G009840 vs. TrEMBL
Match: V4MKY6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026229mg PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.2e-17
Identity = 61/143 (42.66%), Postives = 81/143 (56.64%), Query Frame = 1


Query: 2   TSVFIACHLQYSDLAEADRALILEKFQKTTRRWSQKFRS--------------------- 61
           T  +I+    YSDLAE DR L+LEKF+K T  W+Q+  S                     
Sbjct: 71  TLPYISLAALYSDLAERDRTLVLEKFRKATINWNQQLNSAVVEEALDESEAEKEEKKSHL 130

Query: 62  -LLEDKCVVF------RLQDRELIICK--NEWETYTRRMTTCSTSDGILINMVVGGEVVT 115
            ++ D C+         L  R LI  +   + ETYTRRMTTC    GI+INMVVGGEV T
Sbjct: 131 VVVTDVCLPLISSGESSLSARVLINYELPTKKETYTRRMTTCLAPGGIVINMVVGGEVTT 190

[Close]

BLAST of CmaCh03G009840 vs. TrEMBL
Match: M5VXW4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011388mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-17
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 1


Query: 5   FIACHLQYSDLAEADRALILEKFQKTTRRWS-QKFRSLLEDKCVVFRLQDRELIICKN-- 64
           +I+    Y+DLAEADR+LILE+F++ T RW+ Q      +D   V   Q   +I+  +  
Sbjct: 77  YISLASLYTDLAEADRSLILERFREATMRWNPQASAQPADDNEPVKDEQKSHMIVATDAC 136

Query: 65  -----------------------EWETYTRRMTTCSTSDGILINMVVGGEVVTLESIEGS 115
                                  + ETY RR+TTC  +DGI+INMVVGGEVVTL+SIE S
Sbjct: 137 LPLLASGESPISAHVLINYELPTKKETYMRRLTTCLAADGIVINMVVGGEVVTLKSIEES 196

[Close]

BLAST of CmaCh03G009840 vs. TrEMBL
Match: M5WGM3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011388mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-17
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 1


Query: 5   FIACHLQYSDLAEADRALILEKFQKTTRRWS-QKFRSLLEDKCVVFRLQDRELIICKN-- 64
           +I+    Y+DLAEADR+LILE+F++ T RW+ Q      +D   V   Q   +I+  +  
Sbjct: 37  YISLASLYTDLAEADRSLILERFREATMRWNPQASAQPADDNEPVKDEQKSHMIVATDAC 96

Query: 65  -----------------------EWETYTRRMTTCSTSDGILINMVVGGEVVTLESIEGS 115
                                  + ETY RR+TTC  +DGI+INMVVGGEVVTL+SIE S
Sbjct: 97  LPLLASGESPISAHVLINYELPTKKETYMRRLTTCLAADGIVINMVVGGEVVTLKSIEES 156

[Close]

BLAST of CmaCh03G009840 vs. TAIR10
Match: AT4G37020.2 (AT4G37020.2 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 1


Query: 2   TSVFIACHLQYSDLAEADRALILEKFQKTTRRWSQKFRSLLE------------------ 61
           T  +I+    YSDLA+ +RA+++EKF++ T  W+Q+  S++E                  
Sbjct: 71  TLPYISLAALYSDLADRERAMVIEKFRQATINWNQQLNSVVEEGLEESENGKEEKTSHLV 130

Query: 62  ---DKCVVF------RLQDRELIICK--NEWETYTRRMTTCSTSDGILINMVVGGEVVTL 111
              D C+         L  R LI  +   + ETYTRR+TTC  S GI+INMVVGGEV TL
Sbjct: 131 VVTDVCLPLLSSGESSLSARVLINYELPTKKETYTRRITTCLASGGIVINMVVGGEVTTL 190

[Close]

BLAST of CmaCh03G009840 vs. NCBI nr
Match: gi|449448328|ref|XP_004141918.1| (PREDICTED: eukaryotic initiation factor 4A-I isoform X1 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 3.2e-26
Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 1


Query: 5   FIACHLQYSDLAEADRALILEKFQKTTRRWSQKFRSLLEDKCVVFRLQDRELIICKNEW- 64
           +I+    YSDLAEADR+LILEKF++TT RWSQKF SL E+KC   ++ ++  +I   +  
Sbjct: 76  YISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLSEEKCEAEKVGEKSHMIVVTDAC 135

Query: 65  -------------------------ETYTRRMTTCSTSDGILINMVVGGEVVTLESIEGS 115
                                    ETY RRMTTCS SDGILINMVVGGEVVTL+SIE S
Sbjct: 136 LPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSASDGILINMVVGGEVVTLKSIEES 195

[Close]

BLAST of CmaCh03G009840 vs. NCBI nr
Match: gi|659079470|ref|XP_008440274.1| (PREDICTED: eukaryotic initiation factor 4A isoform X1 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 3.5e-25
Identity = 72/136 (52.94%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 5   FIACHLQYSDLAEADRALILEKFQKTTRRWSQKFRSLLEDKCVVFRLQDRELIICKNEW- 64
           +I+    YSDLAEADRALILEKF++TT RWSQKF SL E+KC   ++ ++  +I   +  
Sbjct: 76  YISLASLYSDLAEADRALILEKFRQTTSRWSQKFSSLSEEKCEGEKVGEKSHMIVVTDAC 135

Query: 65  -------------------------ETYTRRMTTCSTSDGILINMVVGGEVVTLESIEGS 115
                                    E Y RRMTTCS SDGILINMVVGGEVVTL+SIE +
Sbjct: 136 LPLLASGESPLSAHVLINYEIPTKKEIYMRRMTTCSASDGILINMVVGGEVVTLKSIEEN 195

[Close]

BLAST of CmaCh03G009840 vs. NCBI nr
Match: gi|449448332|ref|XP_004141920.1| (PREDICTED: probable eukaryotic initiation factor 4A isoform X2 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-25
Identity = 71/131 (54.20%), Postives = 85/131 (64.89%), Query Frame = 1


Query: 5   FIACHLQYSDLAEADRALILEKFQKTTRRWSQKFRSLLEDKCVVFRLQDRELIICKNEW- 64
           +I+    YSDLAEADR+LILEKF++TT RWSQKF SL E+KC   ++ ++  +I   +  
Sbjct: 76  YISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLSEEKCEAEKVGEKSHMIVVTDAC 135

Query: 65  -------------------------ETYTRRMTTCSTSDGILINMVVGGEVVTLESIEGS 110
                                    ETY RRMTTCS SDGILINMVVGGEVVTL+SIE S
Sbjct: 136 LPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSASDGILINMVVGGEVVTLKSIEES 195

[Close]

BLAST of CmaCh03G009840 vs. NCBI nr
Match: gi|659079472|ref|XP_008440275.1| (PREDICTED: eukaryotic initiation factor 4A isoform X2 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 5.0e-24
Identity = 70/131 (53.44%), Postives = 84/131 (64.12%), Query Frame = 1


Query: 5   FIACHLQYSDLAEADRALILEKFQKTTRRWSQKFRSLLEDKCVVFRLQDRELIICKNEW- 64
           +I+    YSDLAEADRALILEKF++TT RWSQKF SL E+KC   ++ ++  +I   +  
Sbjct: 76  YISLASLYSDLAEADRALILEKFRQTTSRWSQKFSSLSEEKCEGEKVGEKSHMIVVTDAC 135

Query: 65  -------------------------ETYTRRMTTCSTSDGILINMVVGGEVVTLESIEGS 110
                                    E Y RRMTTCS SDGILINMVVGGEVVTL+SIE +
Sbjct: 136 LPLLASGESPLSAHVLINYEIPTKKEIYMRRMTTCSASDGILINMVVGGEVVTLKSIEEN 195

[Close]

BLAST of CmaCh03G009840 vs. NCBI nr
Match: gi|1009145026|ref|XP_015890110.1| (PREDICTED: eukaryotic initiation factor 4A-I, partial [Ziziphus jujuba])

HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18
Identity = 63/136 (46.32%), Postives = 79/136 (58.09%), Query Frame = 1


Query: 5   FIACHLQYSDLAEADRALILEKFQKTTRRWSQKFRSLLE------------------DKC 64
           FI+    YSDLAE DR+LILEKF++ T RW+QK  + LE                  D C
Sbjct: 59  FISLTPLYSDLAEIDRSLILEKFRQATVRWNQKVDAQLEEDGDAGEDETKSQMIVVTDAC 118

Query: 65  VVFRLQDRELIICK--------NEWETYTRRMTTCSTSDGILINMVVGGEVVTLESIEGS 115
           +         I  +         + ETY RRMTTC  +DGI+INMVVGGEVVTL+SIE S
Sbjct: 119 LPLLSSGESHIAARVLINYELPAKKETYLRRMTTCLATDGIVINMVVGGEVVTLKSIEES 178

The following BLAST results are available for this feature:

BLAST of CmaCh03G009840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G009840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFR9_CUCSA	2.2e-26	53.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490840 PE=4 SV=1	[more]
A0A087GKC2_ARAAL	4.2e-17	42.96	Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G247000 PE=4 SV=1	[more]
V4MKY6_EUTSA	4.2e-17	42.66	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10026229mg PE=4 SV=1	[more]
M5VXW4_PRUPE	5.4e-17	44.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011388mg PE=4 SV=1	[more]
M5WGM3_PRUPE	5.4e-17	44.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011388mg PE=4 SV=1	[more]

BLAST of CmaCh03G009840 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37020.2	2.3e-19	42.03	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmaCh03G009840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448328\|ref\|XP_004141918.1\|	3.2e-26	53.68	PREDICTED: eukaryotic initiation factor 4A-I isoform X1 [Cucumis sativus]	[more]
gi\|659079470\|ref\|XP_008440274.1\|	3.5e-25	52.94	PREDICTED: eukaryotic initiation factor 4A isoform X1 [Cucumis melo]	[more]
gi\|449448332\|ref\|XP_004141920.1\|	4.6e-25	54.20	PREDICTED: probable eukaryotic initiation factor 4A isoform X2 [Cucumis sativus]	[more]
gi\|659079472\|ref\|XP_008440275.1\|	5.0e-24	53.44	PREDICTED: eukaryotic initiation factor 4A isoform X2 [Cucumis melo]	[more]
gi\|1009145026\|ref\|XP_015890110.1\|	7.0e-18	46.32	PREDICTED: eukaryotic initiation factor 4A-I, partial [Ziziphus jujuba]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G009840.1	CmaCh03G009840.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G009840	MELO3C007557.2	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G009840	Cla97C01G015860	Watermelon (97103) v2	cmawmbB670

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G009840	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G009840	Bottle gourd (USVL1VR-Ls)	cmalsiB613
CmaCh03G009840	Cucumber (Gy14) v2	cgybcmaB536
CmaCh03G009840	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G009840	Melon (DHL92) v3.6.1	cmamedB691
CmaCh03G009840	Silver-seed gourd	carcmaB0254
CmaCh03G009840	Silver-seed gourd	carcmaB0567
CmaCh03G009840	Silver-seed gourd	carcmaB1125
CmaCh03G009840	Cucumber (Chinese Long) v3	cmacucB0777
CmaCh03G009840	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G009840	Wax gourd	cmawgoB0790
CmaCh03G009840	Cucurbita maxima (Rimu)	cmacmaB063
CmaCh03G009840	Cucurbita maxima (Rimu)	cmacmaB517
CmaCh03G009840	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh03G009840	Cucumber (Gy14) v1	cgycmaB0231
CmaCh03G009840	Cucurbita moschata (Rifu)	cmacmoB632
CmaCh03G009840	Cucurbita moschata (Rifu)	cmacmoB646
CmaCh03G009840	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G009840	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G009840	Wild cucumber (PI 183967)	cmacpiB680
CmaCh03G009840	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G009840	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G009840	Melon (DHL92) v3.5.1	cmameB607
CmaCh03G009840	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G009840	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G009840	Watermelon (97103) v1	cmawmB630
CmaCh03G009840	Watermelon (97103) v1	cmawmB632
CmaCh03G009840	Cucurbita pepo (Zucchini)	cmacpeB679
CmaCh03G009840	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G009840	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G009840	Cucurbita pepo (Zucchini)	cmacpeB684