CmaCh03G008290 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G008290
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr03 : 6271259 .. 6274233 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGACGAAGAAGACGACCCTTCTTTTTAGCGCGCAGGGGAAGCAAATTGGATCTGGTGCCGTATGATTTAGATGATCCAGGTGCCAAGGTGGGTTCTTCAAACCCCATACTCGCTTTCCTTGGGAAAGGCTAATTTTAGGACAATTATTATTTTTTTCATCAAAAGTCACGATATTTTAGATAAAATTATAGTTTTTTTTCTTTTCTTTTCTTTTAGTTCATAAAATTATAGTTGATAATTTAATATTGATTTATTATGCTATATACTTTGTTCTCTAACCCTAATCTTGGTGCTCTTTTTTCAGTTTAGTGACTTAGTTCCCATTCATTTATAAATTTACAATTTCTTTAAATTCCTTTTAAATCAATAGTATATTTAATCAATATTTCGATTAACATTATATGACCCCAGAAGATTTGGTGGAAGGAAAAAACAATATAATACACTAAACGATAAAATAGAATGTTTTATTTTTTAATTTTTTAAAATTTTAAAATTAGGACTAAATTGGAAAAAGACAGATGATATTATAGACAAAGTAATATCATTTTTATTGGTTAAGATTACCTATACAAATTATTATTCTTAAATTATATTATTTATTATTAATAAAGTTTTTTTAGCTATAATATTCAATTAATTTATTATAGATAATTAAAAAAAACGGTATTTTTGTGGATGTGTTTCAATCCAAGACATTGATTTGTGTCCATTTAAAGTTTGTCTTTAATCAACGTGTATGCCTTATAGCAATATTAATAATTAATTTTATGTGCCTTAGTTCATGATTTAGTAAACATGTTTTTTTTTTTTTTTTTTTATATAGTTTTGATTTATGATGGGCTTGCTTTTGGTTTTCTCAAATTAAGTGGATACATGGATTAGGGAGGCTGTTGGGCTCATTTTTCTCATAAAATCACTAAATTTAAATTCCCATTTTCACAAAATAGCTAAATTACCTTTTTTATTATTATTATTTTATTTTTTTGTAAATAGTCAAATACGAAAAAAATAGTTTAATAAGCCAAAACACTCCATGCACCAAAATTGAATAATAAAATAACAATGAACTGAAATCTAAAATAAAATCTAAATAATTTATTTGAATAAAAGAGTGTTAATTTAAAATCAAAACAAACAAATTAATTTTTTAATAAATTATTTATTTTAATTTGACTATCGTTGGTCAACTTTACAGATCATCAAGAACTGTCATACCAAATACAAGGAATGTTATTTATATTGGGGCAGGTTAGCTGGAGGTACACGCGTCGGGTTGTAATGGGGTATGATCAATTCCGCGCTGGCGTGGCGTGGGTCACCCACCAACTTCCCTATTTTACGACTTAACCAAAATATATATATATATATATATATATATATATATATATATATATCAGAGTAGTTTTAGAAAAGTCTTTTTAAAATTTTTCTATTAATTCAAATGTTTAATAAAAACTATAGTAAATATCGGGCAAGAAAAAAAAATCATTTTTCAAAACTCAAATAATTACCAAACACTTTTTTTTAAGCATATAAATATTATTCTTATTGATTTCTTTTTAATCATCCAATTATGGGGTATATTTTCAAAATCAAAGACAGTTTAAAAATAAGTGTATAGATATATATTTGAAATTTGAAAATCAATTGTTTACTTTTTTATTTTTTTAACAAAGCAAATAGAAGCCATAACAATTGTAAATAGATGGTAAGAAATCAAACAAAATTAAAAAAAAAAAAGTTTTAAAATTACCTTAAAACTAAATTAGATGGTAAATAATTTATGGTCTAATGCTCACCACAACAAATAAATGTACAAATGAGTTATACAAATGGATTGAAATATGTATATATTTATTAGATGAGTAAATATTACGTGACAATAATAATAATAATAATAAGAATAAGAATAGTAACGACAGTTAGGCCACAACTATTATTACTCTATTTTCCGGGGGTCGATTTTTCAAATGATTGTCTGCTTTTTCCATTTATGGCGGCTACCCAATTCCTTTCACGCAACTCTACGCCTTGTCGCCACGTGTACTCGTTTTGACAGCCTGGACTAACTTTTTCTCAGAAAGTTGCAAACCCTCTTGGCAAGTCCTAATGTCCCACCGACATTTCTCGAACTGACACCTGGTGGATCCAACGGGAATGTGTGATTTCTTAAGCGTTGAGAAATCTAAACGCGTACACGTGTCCCATTCTGGGTAGCTTGTTTACTTGGTCAACCTGCATCTGATTCCTCTGGAAGGCTCCTTTGCTATGGTTATATATATACGGACTCGCACCGCCTCCTTGCTTACGAATACAAGAGTAGCAAAGCGCGTCGTTCCTTTTACAAAGCTGTTGTTTGGCTTCCACTACCTTTCTCTAAGATACTCTCTCCTGAGAAGATTTTTCTTTTTTCCTTTTTTTTTTTTTTATTTACGAAAAAGACGATGGGATTCTCTGGGGTTCGATTGGTTGTGATTTTTGCTTTGATGGCGTTGTGTACGGCACAGGCGCCAGCACCGGCACATGATTCCCCAAAGCCTATGCCTCCGACACCAGCCACGCCGGCGCCTTCTCCGGTTGCATTCCCTCCATCTCCGTCTCGGTCGCCAATCAGAGCACCATCACCATCACCGACCTCGGCGTCGCCCTCACCTGCTACAGAGGCTCCATCACCGGCACCGTCGGCACATGCTCCTGCTCCAGAGACTAAAGCGCCTACCCCATCTCCGGCGACTAGTGCACCCACTCCAGCTCCCAGCTCCCGACCTATTCCTTCGGGGTCTCCCGCCGGTGCTCCTGTAGTTCCTCCAATCGCTTCTCCTCCTTCACCCAGTACAGACGGGCCTTCACCGATGCCCGAAGCACCGGCGGCCGATAGCCCAGCTGGAGCGGCGTCGCACATCGGCGGAGCGACGACGTTGGGGATCGCTATTGCTGGAACTCTGTTGGCAATGGTTGTAGCGTAG

mRNA sequence

ATGGCCGGACGAAGAAGACGACCCTTCTTTTTAGCGCGCAGGGGAAGCAAATTGGATCTGGTGCCGTATGATTTAGATGATCCAGGTGCCAAGGCGCCAGCACCGGCACATGATTCCCCAAAGCCTATGCCTCCGACACCAGCCACGCCGGCGCCTTCTCCGGTTGCATTCCCTCCATCTCCGTCTCGGTCGCCAATCAGAGCACCATCACCATCACCGACCTCGGCGTCGCCCTCACCTGCTACAGAGGCTCCATCACCGGCACCGTCGGCACATGCTCCTGCTCCAGAGACTAAAGCGCCTACCCCATCTCCGGCGACTAGTGCACCCACTCCAGCTCCCAGCTCCCGACCTATTCCTTCGGGGTCTCCCGCCGGTGCTCCTGTAGTTCCTCCAATCGCTTCTCCTCCTTCACCCAGTACAGACGGGCCTTCACCGATGCCCGAAGCACCGGCGGCCGATAGCCCAGCTGGAGCGGCGTCGCACATCGGCGGAGCGACGACGTTGGGGATCGCTATTGCTGGAACTCTGTTGGCAATGGTTGTAGCGTAG

Coding sequence (CDS)

ATGGCCGGACGAAGAAGACGACCCTTCTTTTTAGCGCGCAGGGGAAGCAAATTGGATCTGGTGCCGTATGATTTAGATGATCCAGGTGCCAAGGCGCCAGCACCGGCACATGATTCCCCAAAGCCTATGCCTCCGACACCAGCCACGCCGGCGCCTTCTCCGGTTGCATTCCCTCCATCTCCGTCTCGGTCGCCAATCAGAGCACCATCACCATCACCGACCTCGGCGTCGCCCTCACCTGCTACAGAGGCTCCATCACCGGCACCGTCGGCACATGCTCCTGCTCCAGAGACTAAAGCGCCTACCCCATCTCCGGCGACTAGTGCACCCACTCCAGCTCCCAGCTCCCGACCTATTCCTTCGGGGTCTCCCGCCGGTGCTCCTGTAGTTCCTCCAATCGCTTCTCCTCCTTCACCCAGTACAGACGGGCCTTCACCGATGCCCGAAGCACCGGCGGCCGATAGCCCAGCTGGAGCGGCGTCGCACATCGGCGGAGCGACGACGTTGGGGATCGCTATTGCTGGAACTCTGTTGGCAATGGTTGTAGCGTAG

Protein sequence

MAGRRRRPFFLARRGSKLDLVPYDLDDPGAKAPAPAHDSPKPMPPTPATPAPSPVAFPPSPSRSPIRAPSPSPTSASPSPATEAPSPAPSAHAPAPETKAPTPSPATSAPTPAPSSRPIPSGSPAGAPVVPPIASPPSPSTDGPSPMPEAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA
Homology
[Close]
BLAST of CmaCh03G008290 vs. TrEMBL
Match: A0A0A0KG74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499150 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-23
Identity = 90/155 (58.06%), Postives = 106/155 (68.39%), Query Frame = 1 

Query: 30  AKAPAPAHDSPKPMPPTPATPAPSPVAFPPSPSRSPIRAPSPSPTSASPSPATEAPSPAP 89
           A+APAPA  SP+P+ P  ATPAPSPV  PPSP+ +P RAPSPSPT  SPSPA +A SPA 
Sbjct: 21  AQAPAPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPA- 80

Query: 90  SAHAPAPETKAPTPSPATSAPTPAPSSRPIPSGSPAGAPVVPPIASPPSPS-TDGPSPMP 149
                          PA  APTP P S P PS    G PV+PPIASPPSP+  + PSP P
Sbjct: 81  ---------------PAPIAPTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAP 140

Query: 150 EAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 184
           + PAAD+PAGA SHIGGA TLGIA+AGTL  ++++
Sbjct: 141 QGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS 155

[Close]
BLAST of CmaCh03G008290 vs. NCBI nr
Match: gi|700193516|gb|KGN48720.1| (hypothetical protein Csa_6G499150 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 90/155 (58.06%), Postives = 106/155 (68.39%), Query Frame = 1 

Query: 30  AKAPAPAHDSPKPMPPTPATPAPSPVAFPPSPSRSPIRAPSPSPTSASPSPATEAPSPAP 89
           A+APAPA  SP+P+ P  ATPAPSPV  PPSP+ +P RAPSPSPT  SPSPA +A SPA 
Sbjct: 21  AQAPAPAPGSPQPLTPPSATPAPSPVVLPPSPTPTPNRAPSPSPTPVSPSPAPDAASPA- 80

Query: 90  SAHAPAPETKAPTPSPATSAPTPAPSSRPIPSGSPAGAPVVPPIASPPSPS-TDGPSPMP 149
                          PA  APTP P S P PS    G PV+PPIASPPSP+  + PSP P
Sbjct: 81  ---------------PAPIAPTPTPISTPTPS----GGPVLPPIASPPSPTGMEVPSPAP 140

Query: 150 EAPAADSPAGAASHIGGATTLGIAIAGTLLAMVVA 184
           + PAAD+PAGA SHIGGA TLGIA+AGTL  ++++
Sbjct: 141 QGPAADNPAGAGSHIGGAATLGIALAGTLFGVILS 155

The following BLAST results are available for this feature:
BLAST of CmaCh03G008290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh03G008290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KG74_CUCSA2.3e-2358.06Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499150 PE=4 SV=1[more]
BLAST of CmaCh03G008290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh03G008290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193516|gb|KGN48720.1|3.3e-2358.06hypothetical protein Csa_6G499150 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G008290.1CmaCh03G008290.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 24..45
score: 6.2E-14coord: 70..87
score: 6.2E-14coord: 48..64
score: 6.2E-14coord: 89..114
score: 6.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G008290Melon (DHL92) v3.6.1cmamedB681
CmaCh03G008290Melon (DHL92) v3.6.1cmamedB688
CmaCh03G008290Melon (DHL92) v3.6.1cmamedB703
CmaCh03G008290Silver-seed gourdcarcmaB0082
CmaCh03G008290Silver-seed gourdcarcmaB0567
CmaCh03G008290Silver-seed gourdcarcmaB1055
CmaCh03G008290Silver-seed gourdcarcmaB1287
CmaCh03G008290Cucumber (Chinese Long) v3cmacucB0779
CmaCh03G008290Cucumber (Chinese Long) v3cmacucB0787
CmaCh03G008290Cucumber (Chinese Long) v3cmacucB0809
CmaCh03G008290Wax gourdcmawgoB0798
CmaCh03G008290Watermelon (97103) v2cmawmbB670
CmaCh03G008290Watermelon (97103) v2cmawmbB699
CmaCh03G008290Wax gourdcmawgoB0780
CmaCh03G008290Wax gourdcmawgoB0812
CmaCh03G008290Cucurbita maxima (Rimu)cmacmaB187
CmaCh03G008290Cucurbita maxima (Rimu)cmacmaB518
CmaCh03G008290Cucurbita maxima (Rimu)cmacmaB523
CmaCh03G008290Cucumber (Gy14) v1cgycmaB0231
CmaCh03G008290Cucumber (Gy14) v1cgycmaB0458
CmaCh03G008290Cucumber (Gy14) v1cgycmaB0872
CmaCh03G008290Cucurbita moschata (Rifu)cmacmoB635
CmaCh03G008290Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G008290Cucurbita moschata (Rifu)cmacmoB661
CmaCh03G008290Cucurbita moschata (Rifu)cmacmoB667
CmaCh03G008290Wild cucumber (PI 183967)cmacpiB660
CmaCh03G008290Wild cucumber (PI 183967)cmacpiB689
CmaCh03G008290Cucumber (Chinese Long) v2cmacuB652
CmaCh03G008290Cucumber (Chinese Long) v2cmacuB681
CmaCh03G008290Melon (DHL92) v3.5.1cmameB597
CmaCh03G008290Melon (DHL92) v3.5.1cmameB617
CmaCh03G008290Watermelon (Charleston Gray)cmawcgB579
CmaCh03G008290Watermelon (Charleston Gray)cmawcgB601
CmaCh03G008290Watermelon (97103) v1cmawmB617
CmaCh03G008290Watermelon (97103) v1cmawmB632
CmaCh03G008290Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G008290Cucurbita pepo (Zucchini)cmacpeB657
CmaCh03G008290Cucurbita pepo (Zucchini)cmacpeB671
CmaCh03G008290Cucurbita pepo (Zucchini)cmacpeB686
CmaCh03G008290Cucurbita pepo (Zucchini)cmacpeB688
CmaCh03G008290Bottle gourd (USVL1VR-Ls)cmalsiB597
CmaCh03G008290Bottle gourd (USVL1VR-Ls)cmalsiB614
CmaCh03G008290Bottle gourd (USVL1VR-Ls)cmalsiB620
CmaCh03G008290Cucumber (Gy14) v2cgybcmaB237
CmaCh03G008290Cucumber (Gy14) v2cgybcmaB831