CmaCh03G006160 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G006160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Trafficking particle complex subunit 11
Location	Cma_Chr03 : 5388495 .. 5390124 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCCTGATATCCACTCGGGCGAGTTAAAGATCAACATGGTTGATGTGCAAGGAGGTGGTTTGTTTAGCCCAAGGGAAACAGAACACCTTTTGGTTAGCCATCATGTTGAGCTTCTTGGCATTTCTTGTATGGAAGATGATGCGGAATCACATTTGATCTCTGATGAAGCAATGAAGATTAAGCAGTCTTTTGGACTGATTTCTGTTCCATTTCTAAAAAGTTGAGAGTCCTGGTCCTGCAAACTGCAAATTAAGTGGCATCGAGCGAAGCCCATTATGCTTTATGTATCCCTGGGTTATTCTTCACTTAGCGATGAACCAAATGCTAAAAAAATCAACGTCCAAAGGAGCTTGCAGATTGACGGAAAGCCTGCTGTCACAATCGGTCATCACTTTTTGTTGCCTTTCCGGCGGGACCGGTTGTTGCTTTCAAGGACTAAAGCAATCCCTCATTCCGACCAGTCATTTTCTCTGCCTCTAAATGAAACTTGCATACTTGTGGTCAGTGCACGGAATTGCACGGAGGTCCCGTTGCAACTATTATCCATGTCATTTGAAACAGATAATGACGGGATAGAAGAAAAGTCATGTTCCATCAAAAGTGCTAGCGATAACCTTGTAGACCCAGCTCTTCTCATGCCTGGGGAAGAATTTAAGAAGGTTTTCACTGTCACTTCCGAGATAAACCCATCAAAGCTTAGGGTAGGAAATGTGTTACTTGGGTGGAAAAGATATCTTAAAAAAGGGATTATCATGAGGAAGTCCATTTCATCATCATCATCACCATCCTACATTAGTCTTCACTCATGGTGGGCTCAACGATCAAGCTAACTAGTTCATTGACAGCCATCCCTGTAAAAACCAAACATGGTACCAAAGAGATGAGACCATCTAGGATTGTGCCAGAAGAGAAGAGAAGAGATGAAGAGATATTAAGATGAGAACTAGAGGGACCTCAAGCATGTTGTGTGTATATAAGCATAGGGATACTTCCCTTTATGATGATGAGTGCGAATGCACACAGTATAATAATGAGAGTGTTTATGGAGAACATGACATCAGGGGTTCCGCTGACCTCTGGTCATTGCTACAGACAGCTAGCTTGACCAGAGATGACCCAAGGGGTGTACGAGCCTCCAAACCCAAATCACAGTACATAAAAAGAAGCCGAGATCTCGTGGATATATTGATTTTATCATGAAGAAGATGACATAGCGGCCCAATATTTGGATAAAGAAACACTTCAGGCTGTTCCACGCCACCAATCCCAACTATTACCAGTTTGGAGACTCTCGCATCTTTTGGTACTACTCTGCTTCTGAACACAAACTAGCTGTGTTTACAAGGTTGGTGATGATTATAGATTTATTGTATTGATTTTGACGAGAATTCAGATTAGATTCATTTGATTTGTGAGAGAAGGAGAAAATGGTGAAAGAAGAAATGAAGGTAAGAATGTGGGGTTGGGAAGGGGACAAGGTCCATCAGGGAATTTGGGTTAGGGGCGTTAAGCCAACCTCCATGGCATGTGAAATGGTGATCTGAAGGTTGTTTTTGTTCGTGCAGTGTAGCGTGTAGCAGAGACAGAGAAGATAACAGGGCACGTGAGGCCGCCCCTCACAATTAA

mRNA sequence

ATGGGTCCTGATATCCACTCGGGCGAGTTAAAGATCAACATGGTTGATGTGCAAGGAGGTGGTTTGTTTAGCCCAAGGGAAACAGAACACCTTTTGGTTAGCCATCATGTTGAGCTTCTTGGCATTTCTTGTATGGAAGATGATGCGGAATCACATTTGATCTCTGATGAAGCAATGAAGATTAAGCAGTCTTTTGGACTGATTTCTGTTCCATTTCTAAAAAAGTCCTGGTCCTGCAAACTGCAAATTAAGTGGCATCGAGCGAAGCCCATTATGCTTTATGTATCCCTGGGTTATTCTTCACTTAGCGATGAACCAAATGCTAAAAAAATCAACGTCCAAAGGAGCTTGCAGATTGACGGAAAGCCTGCTGTCACAATCGGTCATCACTTTTTGTTGCCTTTCCGGCGGGACCGGTTGTTGCTTTCAAGGACTAAAGCAATCCCTCATTCCGACCAGTCATTTTCTCTGCCTCTAAATGAAACTTGCATACTTGTGGTCAGTGCACGGAATTGCACGGAGGTCCCGTTGCAACTATTATCCATGTCATTTGAAACAGATAATGACGGGATAGAAGAAAAGTCATGTTCCATCAAAAGTGCTAGCGATAACCTTGTAGACCCAGCTCTTCTCATGCCTGGGGAAGAATTTAAGAAGGTTTTCACTGTCACTTCCGAGATAAACCCATCAAAGCTTAGGGTAGGAAATGTGTTACTTGGGTGGAAAAGATATCTTAAAAAAGGGATTATCATGAGGAAGTCCATTTCATCATCATCATCACCATCCTACATTAGTCTTCACTCATGTGTAGCGTGTAGCAGAGACAGAGAAGATAACAGGGCACGTGAGGCCGCCCCTCACAATTAA

Coding sequence (CDS)

ATGGGTCCTGATATCCACTCGGGCGAGTTAAAGATCAACATGGTTGATGTGCAAGGAGGTGGTTTGTTTAGCCCAAGGGAAACAGAACACCTTTTGGTTAGCCATCATGTTGAGCTTCTTGGCATTTCTTGTATGGAAGATGATGCGGAATCACATTTGATCTCTGATGAAGCAATGAAGATTAAGCAGTCTTTTGGACTGATTTCTGTTCCATTTCTAAAAAAGTCCTGGTCCTGCAAACTGCAAATTAAGTGGCATCGAGCGAAGCCCATTATGCTTTATGTATCCCTGGGTTATTCTTCACTTAGCGATGAACCAAATGCTAAAAAAATCAACGTCCAAAGGAGCTTGCAGATTGACGGAAAGCCTGCTGTCACAATCGGTCATCACTTTTTGTTGCCTTTCCGGCGGGACCGGTTGTTGCTTTCAAGGACTAAAGCAATCCCTCATTCCGACCAGTCATTTTCTCTGCCTCTAAATGAAACTTGCATACTTGTGGTCAGTGCACGGAATTGCACGGAGGTCCCGTTGCAACTATTATCCATGTCATTTGAAACAGATAATGACGGGATAGAAGAAAAGTCATGTTCCATCAAAAGTGCTAGCGATAACCTTGTAGACCCAGCTCTTCTCATGCCTGGGGAAGAATTTAAGAAGGTTTTCACTGTCACTTCCGAGATAAACCCATCAAAGCTTAGGGTAGGAAATGTGTTACTTGGGTGGAAAAGATATCTTAAAAAAGGGATTATCATGAGGAAGTCCATTTCATCATCATCATCACCATCCTACATTAGTCTTCACTCATGTGTAGCGTGTAGCAGAGACAGAGAAGATAACAGGGCACGTGAGGCCGCCCCTCACAATTAA

Protein sequence

MGPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKIKQSFGLISVPFLKKSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQIDGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQLLSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLLGWKRYLKKGIIMRKSISSSSSPSYISLHSCVACSRDREDNRAREAAPHN

Homology

[Close]

BLAST of CmaCh03G006160 vs. TrEMBL
Match: A0A0A0KJQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510220 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 9.8e-114
Identity = 207/245 (84.49%), Postives = 223/245 (91.02%), Query Frame = 1


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            GPDIH+GELKIN+VDV+GGGLFSPRETEH+  SHHVELLGISC+ED AESHLISDE MKI
Sbjct: 790  GPDIHAGELKINLVDVRGGGLFSPRETEHIADSHHVELLGISCVEDGAESHLISDEEMKI 849

Query: 62   KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            KQSFGLISVPFLK  +SWSCKLQIKWHR KPIMLYVSLGYS LS+EPNA+KINV RSLQI
Sbjct: 850  KQSFGLISVPFLKSGESWSCKLQIKWHRPKPIMLYVSLGYSPLSNEPNAQKINVHRSLQI 909

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            DGKPAVTIGHHFLLPFR D LLLSRTKA P SDQS SLPLNE C+LV+SARNCTEVPLQL
Sbjct: 910  DGKPAVTIGHHFLLPFRWDPLLLSRTKANPPSDQSLSLPLNEPCVLVISARNCTEVPLQL 969

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
            +SMS E DND IEEKSCSI++AS NLVD ALL+PGEEFKKVFTVTSEIN SK+R+GNVLL
Sbjct: 970  VSMSIEADNDEIEEKSCSIQTASSNLVDRALLVPGEEFKKVFTVTSEINSSKIRLGNVLL 1029

Query: 242  GWKRY 245
             WKRY
Sbjct: 1030 RWKRY 1034

[Close]

BLAST of CmaCh03G006160 vs. TrEMBL
Match: M5VUW8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000465mg PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.4e-83
Identity = 155/244 (63.52%), Postives = 197/244 (80.74%), Query Frame = 1


Query: 2   GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
           G D++SGELKIN+VDV+GGGLFSPR+TE  + SHHVELLGIS  + + ES L +DE  KI
Sbjct: 753 GHDVNSGELKINLVDVRGGGLFSPRDTELSMDSHHVELLGISGPDGEDESQLNTDEIKKI 812

Query: 62  KQSFGLISVPFLKK--SWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
           +QSFGL+SVPFLK   SWSCKL+IKWHR KPIMLYVSLGYS  ++E N +K+NV +SLQI
Sbjct: 813 QQSFGLVSVPFLKSGDSWSCKLEIKWHRPKPIMLYVSLGYSPDTNESNTQKVNVHKSLQI 872

Query: 122 DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
           +GK A+ I H F+LPFRR  LLLSRT+ +P +DQS S+P NET +L+VSA+NC++VPLQL
Sbjct: 873 EGKNAIIISHRFMLPFRRYPLLLSRTRPVPDTDQSASMPSNETSVLLVSAKNCSDVPLQL 932

Query: 182 LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
           LS+S E D +   E+S S++    +L+DPALL+PGEEFKKV+TVT E+N SKL++GNV L
Sbjct: 933 LSLSLEVDGNDGTERSFSVQHGGKDLLDPALLVPGEEFKKVYTVTPEMNSSKLKLGNVCL 992

Query: 242 GWKR 244
            W+R
Sbjct: 993 TWRR 996

[Close]

BLAST of CmaCh03G006160 vs. TrEMBL
Match: W9S569_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022833 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 7.1e-80
Identity = 152/245 (62.04%), Postives = 192/245 (78.37%), Query Frame = 1


Query: 2   GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSH-HVELLGISCMEDDAESHLISDEAMK 61
           G D+HSGELKIN+VDV+GGGLFSPRE+EH+ + + HVELLGIS  E + ES    ++  K
Sbjct: 437 GHDVHSGELKINLVDVRGGGLFSPRESEHISMDNAHVELLGISGPEGEDESDQGVEKIKK 496

Query: 62  IKQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQ 121
           I++SFGL+SVPFLK   SWSCKL+IKWHR KPIMLYVSLGYS   D+  A K+N+ +SLQ
Sbjct: 497 IQESFGLVSVPFLKCSDSWSCKLEIKWHRPKPIMLYVSLGYSPDGDDSTAHKVNIHKSLQ 556

Query: 122 IDGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQ 181
           I+GK A+ I H F+LPFRRD LLLSRTK +P SDQ  +LPLNET +LVV A+NC +VPLQ
Sbjct: 557 IEGKTAILISHRFMLPFRRDPLLLSRTKPVPESDQLTTLPLNETSVLVVGAKNCADVPLQ 616

Query: 182 LLSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVL 241
           L+S+S E D D I   SCS++  SD L DPA+++PGEEFKKVF++T ++N  KLR+GNV 
Sbjct: 617 LMSISVEADEDDI-GMSCSVQHGSDRL-DPAIVVPGEEFKKVFSITPKVNLPKLRLGNVC 676

Query: 242 LGWKR 244
           + W+R
Sbjct: 677 VRWRR 679

[Close]

BLAST of CmaCh03G006160 vs. TrEMBL
Match: K7MGN4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G112900 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 2.1e-76
Identity = 148/263 (56.27%), Postives = 203/263 (77.19%), Query Frame = 1


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETE-HLLVSHHVELLGISCMEDDAESHLISDEAMK 61
            G D++SGELKIN+VDV+GGGLFSPR++E + L SHHV+LLGIS  E + +S L SD+  K
Sbjct: 788  GHDVYSGELKINLVDVKGGGLFSPRDSEPYALDSHHVQLLGISGPEGEDDSQLDSDKIKK 847

Query: 62   IKQSFGLISVPFLKK--SWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQ 121
            I+QSFGLISVP LK   SWSCKL+IKWHR KPIMLYVSLGY+  S+E NA+ ++V ++LQ
Sbjct: 848  IQQSFGLISVPILKNGASWSCKLEIKWHRPKPIMLYVSLGYTPFSNELNAQTVHVHKNLQ 907

Query: 122  IDGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQ 181
            I+G  A+ + HH+L+PFRRD LLLS+ K    SDQ  SLPLN+  +L+VSA+NCTE+PL+
Sbjct: 908  IEGHTAILLNHHYLMPFRRDPLLLSKNKQASESDQPESLPLNQKNVLIVSAKNCTELPLR 967

Query: 182  LLSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVL 241
            + S+S E ++D   E++CSI+  +  L +P+LL+PGEEFKKVF+V+S++N SKL++G + 
Sbjct: 968  IKSISIEVEDDA--ERTCSIQHGTKELSNPSLLVPGEEFKKVFSVSSDMNISKLKLGTMC 1027

Query: 242  LGWKRYLKKGIIMRKSISSSSSP 262
            L W+R L    +  +S S+S+ P
Sbjct: 1028 LSWRRDLG---VEEQSASTSTLP 1045

[Close]

BLAST of CmaCh03G006160 vs. TrEMBL
Match: A0A067G7S3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040980mg PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.4e-75
Identity = 147/245 (60.00%), Postives = 187/245 (76.33%), Query Frame = 1


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETE-HLLVSHHVELLGISCMEDDAESHLISDEAMK 61
            G DI+SGELKIN+VDV+GGGLFSPRETE   + SHHVELLGI   E   E  L   E  K
Sbjct: 795  GHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPE---EEELGPGEIEK 854

Query: 62   IKQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQ 121
            I+QSFGL+S+PFLK  +SWSCKL+IKWHR KP+ML+VSLGYS L++E  A+K++V +SLQ
Sbjct: 855  IQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPLNNESTAQKVHVHKSLQ 914

Query: 122  IDGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQ 181
            I+G  A+ +GH F+LPFRRD LLLSR K +  S+Q  SLPLNET +L+VSA+NCTEV LQ
Sbjct: 915  IEGMAAIAVGHRFMLPFRRDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQ 974

Query: 182  LLSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVL 241
            L S++ + + DG  E+ CS++   +NL  P+LLMPGEEFKKVFT+  ++  SKL +G V 
Sbjct: 975  LQSVAIDNE-DGDSERVCSVQHGGENLSGPSLLMPGEEFKKVFTIVPKVESSKLGLGTVC 1034

Query: 242  LGWKR 244
            L W+R
Sbjct: 1035 LRWRR 1035

[Close]

BLAST of CmaCh03G006160 vs. TAIR10
Match: AT5G65950.1 (AT5G65950.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 248.1 bits (632), Expect = 6.8e-66
Identity = 133/247 (53.85%), Postives = 169/247 (68.42%), Query Frame = 1


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHL-LVSHHVELLGISCMEDDAESHLISDEAMK 61
            G  ++SGELKIN+VDV GGGLFSPRE E   L SHHVE+ GI   E + ES   +    K
Sbjct: 803  GHAVYSGELKINLVDVGGGGLFSPREAEPFSLESHHVEICGIDGAEGNNESESETGSIKK 862

Query: 62   IKQSFGLISVPFLKK--SWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQ 121
            I+QSFGL+SVP+LK+  SWSCKL+IKWHR KP+ML+VSLGY     E N +K+++ +SLQ
Sbjct: 863  IQQSFGLVSVPYLKEGESWSCKLEIKWHRPKPVMLFVSLGYLPHGSEANTQKVHIHKSLQ 922

Query: 122  IDGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQ 181
            I+GK  + I + F+LP+RRD LLL+R K  P S+   SLPLNE  +LVVSA+NC+E+ L+
Sbjct: 923  IEGKMPLLISNRFMLPYRRDHLLLNRIKPAPDSEDVSSLPLNEKSVLVVSAKNCSEIALK 982

Query: 182  LLSMSFETDNDGIEEKSCSIKSASDNLVDP--ALLMPGEEFKKVFTVTSEINPSKLRVGN 241
            L+SMS E D D   E SC I+        P  A L PGEEFKKVFTV       KL +G+
Sbjct: 983  LVSMSIEFD-DEQGETSCLIQQGGGCGDSPSSANLAPGEEFKKVFTVIPTTRTPKLGLGS 1042

Query: 242  VLLGWKR 244
            + L W+R
Sbjct: 1043 IHLKWRR 1048

[Close]

BLAST of CmaCh03G006160 vs. NCBI nr
Match: gi|659080700|ref|XP_008440933.1| (PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 11 [Cucumis melo])

HSP 1 Score: 427.2 bits (1097), Expect = 2.3e-116
Identity = 213/258 (82.56%), Postives = 230/258 (89.15%), Query Frame = 1


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            GPDIH+GELKIN+VDV+GGGLFSPRE EH+  SHHVELLGISC+ED A+SHLISDE MKI
Sbjct: 790  GPDIHAGELKINLVDVRGGGLFSPREAEHIADSHHVELLGISCVEDGAKSHLISDEEMKI 849

Query: 62   KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            KQSFGLISVPFLK  +SWSCKLQIKWHR KPI+LYVSLGYS LS+EPNA+KINV RSLQI
Sbjct: 850  KQSFGLISVPFLKSGESWSCKLQIKWHRPKPIVLYVSLGYSPLSNEPNAQKINVHRSLQI 909

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            DGKPAVTIGHHFLLPFR D LLLSRTKA P SDQS SLPLNETCILV+SARNCTEVPLQL
Sbjct: 910  DGKPAVTIGHHFLLPFRWDPLLLSRTKANPQSDQSLSLPLNETCILVISARNCTEVPLQL 969

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
            +SMS E DNDGIEEKSCSI++ S NLVDPALLMPGEEFKKVFTVTSEINPSKLR+GNVLL
Sbjct: 970  VSMSIEADNDGIEEKSCSIRTGSSNLVDPALLMPGEEFKKVFTVTSEINPSKLRLGNVLL 1029

Query: 242  GWKRYLKKGIIMRKSISS 258
             WKRY +       SI+S
Sbjct: 1030 RWKRYSRSKDQHDSSIAS 1047

[Close]

BLAST of CmaCh03G006160 vs. NCBI nr
Match: gi|449434072|ref|XP_004134820.1| (PREDICTED: trafficking protein particle complex subunit 11 isoform X1 [Cucumis sativus])

HSP 1 Score: 417.9 bits (1073), Expect = 1.4e-113
Identity = 207/245 (84.49%), Postives = 223/245 (91.02%), Query Frame = 1


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            GPDIH+GELKIN+VDV+GGGLFSPRETEH+  SHHVELLGISC+ED AESHLISDE MKI
Sbjct: 790  GPDIHAGELKINLVDVRGGGLFSPRETEHIADSHHVELLGISCVEDGAESHLISDEEMKI 849

Query: 62   KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            KQSFGLISVPFLK  +SWSCKLQIKWHR KPIMLYVSLGYS LS+EPNA+KINV RSLQI
Sbjct: 850  KQSFGLISVPFLKSGESWSCKLQIKWHRPKPIMLYVSLGYSPLSNEPNAQKINVHRSLQI 909

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            DGKPAVTIGHHFLLPFR D LLLSRTKA P SDQS SLPLNE C+LV+SARNCTEVPLQL
Sbjct: 910  DGKPAVTIGHHFLLPFRWDPLLLSRTKANPPSDQSLSLPLNEPCVLVISARNCTEVPLQL 969

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
            +SMS E DND IEEKSCSI++AS NLVD ALL+PGEEFKKVFTVTSEIN SK+R+GNVLL
Sbjct: 970  VSMSIEADNDEIEEKSCSIQTASSNLVDRALLVPGEEFKKVFTVTSEINSSKIRLGNVLL 1029

Query: 242  GWKRY 245
             WKRY
Sbjct: 1030 RWKRY 1034

[Close]

BLAST of CmaCh03G006160 vs. NCBI nr
Match: gi|778719974|ref|XP_011658089.1| (PREDICTED: trafficking protein particle complex subunit 11 isoform X2 [Cucumis sativus])

HSP 1 Score: 417.9 bits (1073), Expect = 1.4e-113
Identity = 207/245 (84.49%), Postives = 223/245 (91.02%), Query Frame = 1


Query: 2   GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
           GPDIH+GELKIN+VDV+GGGLFSPRETEH+  SHHVELLGISC+ED AESHLISDE MKI
Sbjct: 645 GPDIHAGELKINLVDVRGGGLFSPRETEHIADSHHVELLGISCVEDGAESHLISDEEMKI 704

Query: 62  KQSFGLISVPFLK--KSWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
           KQSFGLISVPFLK  +SWSCKLQIKWHR KPIMLYVSLGYS LS+EPNA+KINV RSLQI
Sbjct: 705 KQSFGLISVPFLKSGESWSCKLQIKWHRPKPIMLYVSLGYSPLSNEPNAQKINVHRSLQI 764

Query: 122 DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
           DGKPAVTIGHHFLLPFR D LLLSRTKA P SDQS SLPLNE C+LV+SARNCTEVPLQL
Sbjct: 765 DGKPAVTIGHHFLLPFRWDPLLLSRTKANPPSDQSLSLPLNEPCVLVISARNCTEVPLQL 824

Query: 182 LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
           +SMS E DND IEEKSCSI++AS NLVD ALL+PGEEFKKVFTVTSEIN SK+R+GNVLL
Sbjct: 825 VSMSIEADNDEIEEKSCSIQTASSNLVDRALLVPGEEFKKVFTVTSEINSSKIRLGNVLL 884

Query: 242 GWKRY 245
            WKRY
Sbjct: 885 RWKRY 889

[Close]

BLAST of CmaCh03G006160 vs. NCBI nr
Match: gi|645273924|ref|XP_008242110.1| (PREDICTED: trafficking protein particle complex subunit 11 [Prunus mume])

HSP 1 Score: 320.5 bits (820), Expect = 3.1e-84
Identity = 156/244 (63.93%), Postives = 198/244 (81.15%), Query Frame = 1


Query: 2    GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
            G D++SGELKIN+VDV+GGGLFSPR+TE  + SHHVELLGIS  + + ES L +DE  KI
Sbjct: 793  GHDVNSGELKINLVDVRGGGLFSPRDTELSMDSHHVELLGISGPDGEDESQLNTDEIKKI 852

Query: 62   KQSFGLISVPFLKK--SWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
            +QSFGL+SVPFLK   SWSCKL+IKWHR KPIMLYVSLGYS  ++E N +K+NV +SLQI
Sbjct: 853  QQSFGLVSVPFLKSGDSWSCKLEIKWHRPKPIMLYVSLGYSPDTNESNTQKVNVHKSLQI 912

Query: 122  DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
            +GK A+ I H F+LPFRR  LLLSRT+ +P +D+S S+P NET +LVVSA+NC++VPLQL
Sbjct: 913  EGKNAIIISHRFMLPFRRYPLLLSRTRPVPDTDRSASMPSNETSVLVVSAKNCSDVPLQL 972

Query: 182  LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
            LS+S E D +   E+SCS++    +L+D ALL+PGEEFKKV+TVTSE+N SKL++GNV L
Sbjct: 973  LSLSLEVDGNDGTERSCSVQHGGKDLLDAALLVPGEEFKKVYTVTSEMNSSKLKLGNVCL 1032

Query: 242  GWKR 244
             W+R
Sbjct: 1033 TWRR 1036

[Close]

BLAST of CmaCh03G006160 vs. NCBI nr
Match: gi|595815933|ref|XP_007203983.1| (hypothetical protein PRUPE_ppa000465mg [Prunus persica])

HSP 1 Score: 317.8 bits (813), Expect = 2.0e-83
Identity = 155/244 (63.52%), Postives = 197/244 (80.74%), Query Frame = 1


Query: 2   GPDIHSGELKINMVDVQGGGLFSPRETEHLLVSHHVELLGISCMEDDAESHLISDEAMKI 61
           G D++SGELKIN+VDV+GGGLFSPR+TE  + SHHVELLGIS  + + ES L +DE  KI
Sbjct: 753 GHDVNSGELKINLVDVRGGGLFSPRDTELSMDSHHVELLGISGPDGEDESQLNTDEIKKI 812

Query: 62  KQSFGLISVPFLKK--SWSCKLQIKWHRAKPIMLYVSLGYSSLSDEPNAKKINVQRSLQI 121
           +QSFGL+SVPFLK   SWSCKL+IKWHR KPIMLYVSLGYS  ++E N +K+NV +SLQI
Sbjct: 813 QQSFGLVSVPFLKSGDSWSCKLEIKWHRPKPIMLYVSLGYSPDTNESNTQKVNVHKSLQI 872

Query: 122 DGKPAVTIGHHFLLPFRRDRLLLSRTKAIPHSDQSFSLPLNETCILVVSARNCTEVPLQL 181
           +GK A+ I H F+LPFRR  LLLSRT+ +P +DQS S+P NET +L+VSA+NC++VPLQL
Sbjct: 873 EGKNAIIISHRFMLPFRRYPLLLSRTRPVPDTDQSASMPSNETSVLLVSAKNCSDVPLQL 932

Query: 182 LSMSFETDNDGIEEKSCSIKSASDNLVDPALLMPGEEFKKVFTVTSEINPSKLRVGNVLL 241
           LS+S E D +   E+S S++    +L+DPALL+PGEEFKKV+TVT E+N SKL++GNV L
Sbjct: 933 LSLSLEVDGNDGTERSFSVQHGGKDLLDPALLVPGEEFKKVYTVTPEMNSSKLKLGNVCL 992

Query: 242 GWKR 244
            W+R
Sbjct: 993 TWRR 996

The following BLAST results are available for this feature:

BLAST of CmaCh03G006160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G006160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJQ1_CUCSA	9.8e-114	84.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510220 PE=4 SV=1	[more]
M5VUW8_PRUPE	1.4e-83	63.52	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000465mg PE=4 SV=1	[more]
W9S569_9ROSA	7.1e-80	62.04	Uncharacterized protein OS=Morus notabilis GN=L484_022833 PE=4 SV=1	[more]
K7MGN4_SOYBN	2.1e-76	56.27	Uncharacterized protein OS=Glycine max GN=GLYMA_16G112900 PE=4 SV=1	[more]
A0A067G7S3_CITSI	2.4e-75	60.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040980mg PE=4 SV=1	[more]

BLAST of CmaCh03G006160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65950.1	6.8e-66	53.85	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmaCh03G006160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080700\|ref\|XP_008440933.1\|	2.3e-116	82.56	PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 11 ...	[more]
gi\|449434072\|ref\|XP_004134820.1\|	1.4e-113	84.49	PREDICTED: trafficking protein particle complex subunit 11 isoform X1 [Cucumis s...	[more]
gi\|778719974\|ref\|XP_011658089.1\|	1.4e-113	84.49	PREDICTED: trafficking protein particle complex subunit 11 isoform X2 [Cucumis s...	[more]
gi\|645273924\|ref\|XP_008242110.1\|	3.1e-84	63.93	PREDICTED: trafficking protein particle complex subunit 11 [Prunus mume]	[more]
gi\|595815933\|ref\|XP_007203983.1\|	2.0e-83	63.52	hypothetical protein PRUPE_ppa000465mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0044723	single-organism carbohydrate metabolic process
biological_process	GO:0044763	single-organism cellular process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006160.1	CmaCh03G006160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14374	FOIE GRAS	coord: 4..243 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G006160	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G006160	Watermelon (97103) v2	cmawmbB670
CmaCh03G006160	Wax gourd	cmawgoB0788
CmaCh03G006160	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh03G006160	Cucumber (Gy14) v1	cgycmaB0047
CmaCh03G006160	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G006160	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G006160	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G006160	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G006160	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G006160	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G006160	Watermelon (97103) v1	cmawmB632
CmaCh03G006160	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G006160	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G006160	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G006160	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G006160	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G006160	Silver-seed gourd	carcmaB0567
CmaCh03G006160	Silver-seed gourd	carcmaB0912