CmaCh03G006150 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G006150
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Trafficking particle complex subunit 11
Location	Cma_Chr03 : 5387694 .. 5388455 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGTAATTAGTTGCTTTCTCATGAGTTCTTGGAATTTTGATTCTATATCAGTTTTTTTTTTTTTCTCTAATAGTAAACATGCATTAAAGAGGTTAAGGTATACAGAAAACGGAGATGAGATTCTGGTATCCCAGCAATGCCTAGGGGAAATTTGATTCTATATCATGTTCATAATGGTTCTGAAGAGTTTACGTTTTTCAGTTTCCTTTGTTCAAAATTGTTCCTAAGTACTGCATACATATTCGGATTCTTGGACATATGTTCTAAGCAAGATTTTTTTATCCTGTGGAGATGTGATATTGTCATTGGCTCATCTTACTAGATTCTGAATATTTGAACCATTTCAGTTTTCCCCTCATTATCCTAGGTGTATGGTTTTGTTAGTCGATTATATAGAGAGAGAGATACACATACATATGAATATTTGTAGCCAGTTAGATAGCTGCGCATGTATATGTATATGTGGTTTTCTGGTTATAATGCTTTGAGATTTATGTTTTTTTTTTCTCCTTCAGATCGAAGTGGGAAACTTGAATGCACCTCTGTTATTGCAAAGATACGGCCAAACTTTACGATCTGTTGCAGAGCTGAAAGCCCTGTTTCAATGAATGATTTACCTCTTTGGAAGTTCGAAGATCATGTGGAGATGCTCCCAACCAAGGATCCTGCTCTAGCCTTTTCTGGCCTAAAAGCAATCCAGGTTGAAGAGCTTGACCCAGAAGTAGATCTTACTTTAAGCGCTTCTACCCTTGCATAA

mRNA sequence

ATGACTGATCGAAGTGGGAAACTTGAATGCACCTCTGTTATTGCAAAGATACGGCCAAACTTTACGATCTGTTGCAGAGCTGAAAGCCCTGTTTCAATGAATGATTTACCTCTTTGGAAGTTCGAAGATCATGTGGAGATGCTCCCAACCAAGGATCCTGCTCTAGCCTTTTCTGGCCTAAAAGCAATCCAGGTTGAAGAGCTTGACCCAGAAGTAGATCTTACTTTAAGCGCTTCTACCCTTGCATAA

Coding sequence (CDS)

ATGACTGATCGAAGTGGGAAACTTGAATGCACCTCTGTTATTGCAAAGATACGGCCAAACTTTACGATCTGTTGCAGAGCTGAAAGCCCTGTTTCAATGAATGATTTACCTCTTTGGAAGTTCGAAGATCATGTGGAGATGCTCCCAACCAAGGATCCTGCTCTAGCCTTTTCTGGCCTAAAAGCAATCCAGGTTGAAGAGCTTGACCCAGAAGTAGATCTTACTTTAAGCGCTTCTACCCTTGCATAA

Protein sequence

MTDRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLKAIQVEELDPEVDLTLSASTLA

Homology

[Close]

BLAST of CmaCh03G006150 vs. TrEMBL
Match: A0A0A0KJQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510220 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.8e-35
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 2   TDRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLK 61
           +D+SGKLECTSVIAKIRPNFTICCRAESPVSM+DLPLWKFEDHVE LPTKDPALAFSGL+
Sbjct: 694 SDQSGKLECTSVIAKIRPNFTICCRAESPVSMDDLPLWKFEDHVETLPTKDPALAFSGLR 753

Query: 62  AIQVEELDPEVDLTLSASTLA 83
           +IQVEELDPEVDLTLSAST A
Sbjct: 754 SIQVEELDPEVDLTLSASTPA 774

[Close]

BLAST of CmaCh03G006150 vs. TrEMBL
Match: M5VUW8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000465mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 9.9e-27
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 2   TDRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLK 61
           +D+SGKLEC SVIAKI P+FTICCRAESP SM+DLPLWKFED V   PTKDPALAFSG K
Sbjct: 657 SDKSGKLECISVIAKIGPHFTICCRAESPASMDDLPLWKFEDRVVTYPTKDPALAFSGQK 716

Query: 62  AIQVEELDPEVDLTLSA 79
           A QVEE DPEVDL L A
Sbjct: 717 ATQVEEPDPEVDLNLGA 733

[Close]

BLAST of CmaCh03G006150 vs. TrEMBL
Match: A0A0B0N1N2_GOSAR (Trafficking particle complex subunit 11 OS=Gossypium arboreum GN=F383_30939 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-26
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1


Query: 2   TDRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLK 61
           +++SGKLEC S+IAK+ P+FTICCRAESP SM+DLPLWKFED VE  PTKDPAL+FSG K
Sbjct: 683 SEQSGKLECISIIAKMGPHFTICCRAESPASMDDLPLWKFEDRVETFPTKDPALSFSGQK 742

Query: 62  AIQVEELDPEVDLTLSAS 80
           A QVEE DP+VD+TL AS
Sbjct: 743 AAQVEEPDPQVDVTLGAS 760

[Close]

BLAST of CmaCh03G006150 vs. TrEMBL
Match: A0A0D2M0Y4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G200200 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-26
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1


Query: 2   TDRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLK 61
           +++SGKLEC S+IAK+ P+FTICCRAESP SM+DLPLWKFED VE  PTKDPAL+FSG K
Sbjct: 683 SEQSGKLECISIIAKMGPHFTICCRAESPASMDDLPLWKFEDRVETFPTKDPALSFSGQK 742

Query: 62  AIQVEELDPEVDLTLSAS 80
           A QVEE DP+VD+TL AS
Sbjct: 743 AAQVEEPDPQVDVTLGAS 760

[Close]

BLAST of CmaCh03G006150 vs. TrEMBL
Match: A0A061DF03_THECC (C-terminal, Foie gras liver health family 1 OS=Theobroma cacao GN=TCM_000026 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-26
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 1


Query: 3   DRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLKA 62
           ++SGKLEC SVIAK+ P+FTICCRAESP SM+DLPLWKFED VE  PTKDPAL+FSG KA
Sbjct: 683 EQSGKLECISVIAKMGPHFTICCRAESPASMDDLPLWKFEDRVETFPTKDPALSFSGQKA 742

Query: 63  IQVEELDPEVDLTLSAS 80
            QVEE DP+VD+TL +S
Sbjct: 743 AQVEEPDPQVDVTLGSS 759

[Close]

BLAST of CmaCh03G006150 vs. TAIR10
Match: AT5G65950.1 (AT5G65950.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-23
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 2   TDRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLK 61
           +++SGKLEC SV+AK+ P FTIC RAESP +M DLP+WK E+ VE LPTKDP LA  G K
Sbjct: 707 SEQSGKLECLSVLAKLGPLFTICSRAESPAAMEDLPVWKHENRVESLPTKDPVLAVFGQK 766

Query: 62  AIQVEELDPEVDLTLSAS 80
           A QV+E +P+VD++L AS
Sbjct: 767 ATQVDEPEPQVDVSLGAS 784

[Close]

BLAST of CmaCh03G006150 vs. NCBI nr
Match: gi|449434072|ref|XP_004134820.1| (PREDICTED: trafficking protein particle complex subunit 11 isoform X1 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 8.3e-35
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 2   TDRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLK 61
           +D+SGKLECTSVIAKIRPNFTICCRAESPVSM+DLPLWKFEDHVE LPTKDPALAFSGL+
Sbjct: 694 SDQSGKLECTSVIAKIRPNFTICCRAESPVSMDDLPLWKFEDHVETLPTKDPALAFSGLR 753

Query: 62  AIQVEELDPEVDLTLSASTLA 83
           +IQVEELDPEVDLTLSAST A
Sbjct: 754 SIQVEELDPEVDLTLSASTPA 774

[Close]

BLAST of CmaCh03G006150 vs. NCBI nr
Match: gi|778719974|ref|XP_011658089.1| (PREDICTED: trafficking protein particle complex subunit 11 isoform X2 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 8.3e-35
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 2   TDRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLK 61
           +D+SGKLECTSVIAKIRPNFTICCRAESPVSM+DLPLWKFEDHVE LPTKDPALAFSGL+
Sbjct: 549 SDQSGKLECTSVIAKIRPNFTICCRAESPVSMDDLPLWKFEDHVETLPTKDPALAFSGLR 608

Query: 62  AIQVEELDPEVDLTLSASTLA 83
           +IQVEELDPEVDLTLSAST A
Sbjct: 609 SIQVEELDPEVDLTLSASTPA 629

[Close]

BLAST of CmaCh03G006150 vs. NCBI nr
Match: gi|659080700|ref|XP_008440933.1| (PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 11 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 73/81 (90.12%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 2   TDRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLK 61
           +D+SGKLECTSVIAKIRPNFTICCRAESPVSM+DLPLWKFEDHVE LPTKDPALAFSGL+
Sbjct: 694 SDQSGKLECTSVIAKIRPNFTICCRAESPVSMDDLPLWKFEDHVETLPTKDPALAFSGLR 753

Query: 62  AIQVEELDPEVDLTLSASTLA 83
           +IQVEELDPEVDLTL+AST A
Sbjct: 754 SIQVEELDPEVDLTLNASTPA 774

[Close]

BLAST of CmaCh03G006150 vs. NCBI nr
Match: gi|645273924|ref|XP_008242110.1| (PREDICTED: trafficking protein particle complex subunit 11 [Prunus mume])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 1


Query: 2   TDRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLK 61
           +D+SGKLEC SVIAKI P+FTICCRAESP SM++LPLWKFED V   PTKDPALAFSG K
Sbjct: 697 SDKSGKLECISVIAKIGPHFTICCRAESPASMDELPLWKFEDRVVTYPTKDPALAFSGQK 756

Query: 62  AIQVEELDPEVDLTLSAS 80
           A QVEE DPEVDL L AS
Sbjct: 757 ATQVEEPDPEVDLNLGAS 774

[Close]

BLAST of CmaCh03G006150 vs. NCBI nr
Match: gi|595815933|ref|XP_007203983.1| (hypothetical protein PRUPE_ppa000465mg [Prunus persica])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 2   TDRSGKLECTSVIAKIRPNFTICCRAESPVSMNDLPLWKFEDHVEMLPTKDPALAFSGLK 61
           +D+SGKLEC SVIAKI P+FTICCRAESP SM+DLPLWKFED V   PTKDPALAFSG K
Sbjct: 657 SDKSGKLECISVIAKIGPHFTICCRAESPASMDDLPLWKFEDRVVTYPTKDPALAFSGQK 716

Query: 62  AIQVEELDPEVDLTLSA 79
           A QVEE DPEVDL L A
Sbjct: 717 ATQVEEPDPEVDLNLGA 733

The following BLAST results are available for this feature:

BLAST of CmaCh03G006150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G006150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJQ1_CUCSA	5.8e-35	91.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510220 PE=4 SV=1	[more]
M5VUW8_PRUPE	9.9e-27	79.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000465mg PE=4 SV=1	[more]
A0A0B0N1N2_GOSAR	1.3e-26	74.36	Trafficking particle complex subunit 11 OS=Gossypium arboreum GN=F383_30939 PE=4...	[more]
A0A0D2M0Y4_GOSRA	1.3e-26	74.36	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G200200 PE=4 SV=1	[more]
A0A061DF03_THECC	2.9e-26	75.32	C-terminal, Foie gras liver health family 1 OS=Theobroma cacao GN=TCM_000026 PE=...	[more]

BLAST of CmaCh03G006150 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65950.1	1.2e-23	62.82	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmaCh03G006150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434072\|ref\|XP_004134820.1\|	8.3e-35	91.36	PREDICTED: trafficking protein particle complex subunit 11 isoform X1 [Cucumis s...	[more]
gi\|778719974\|ref\|XP_011658089.1\|	8.3e-35	91.36	PREDICTED: trafficking protein particle complex subunit 11 isoform X2 [Cucumis s...	[more]
gi\|659080700\|ref\|XP_008440933.1\|	1.8e-34	90.12	PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 11 ...	[more]
gi\|645273924\|ref\|XP_008242110.1\|	1.4e-26	78.21	PREDICTED: trafficking protein particle complex subunit 11 [Prunus mume]	[more]
gi\|595815933\|ref\|XP_007203983.1\|	1.4e-26	79.22	hypothetical protein PRUPE_ppa000465mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006150.1	CmaCh03G006150.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G006150	MELO3C007982	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G006150	Bhi03G000557	Wax gourd	cmawgoB0788

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G006150	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh03G006150	Cucumber (Gy14) v1	cgycmaB0047
CmaCh03G006150	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G006150	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G006150	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G006150	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G006150	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G006150	Watermelon (97103) v1	cmawmB632
CmaCh03G006150	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G006150	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G006150	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G006150	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G006150	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G006150	Silver-seed gourd	carcmaB0567
CmaCh03G006150	Silver-seed gourd	carcmaB0912
CmaCh03G006150	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G006150	Watermelon (97103) v2	cmawmbB670