CmaCh03G006140 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G006140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Trafficking protein particle complex subunit-like protein
Location	Cma_Chr03 : 5385876 .. 5386829 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTGGCGCCGCCGCCTTTCCGGTCGGAAAGAGTGAAAGGGGAAAGAAGGCGAGTCGGTTTAAAGCAGGAAAGGCGGGGGAGGAAAGAAGAGAACGAAAAGATAACAGAGTCTTATATTGTCTTTTTTTCAAATTGAACCGGTTCAACCTCAACCGACATCGGTTTGGGTTGGTTTAAACCGACCTTTTCAAGATAAATTTATTTATTTACAAAATTTAAAATCACAAATAAAATACTTCAAGAAATAAAATAAAATAAGTTAGATTTTATTCAATGAGACGCAAAATGAATCGGCGCCTAATTACGTCACGTCGGAAGAGCTTCAGACTCCACCTATGAGGCTGATTTCCCTCGTCGGATGCCCCGACCTTCACCCCACCATTCTCCTCTCACCTTCTCTCCGAGCAGCCTCCGATCCACACTCTTGCCTTCTTCGACCTCTCCAAGATCATAAAGCCATTGGACTCCTCTGAACCTCCTCTTTCCACTCCCCCTCCCGGTATCTTCAATAGGGATTGGCTTCTTGAGCATCGAACCATGGTTCCTGCTGTCGTTACTGCTCTTTTCCCTTCTCTTCATGTTTCCGGCGATCCTGCCCAGTGGCTTCAGCTCTGCTCCGATCTCGATCACCTCAAGTACTTCCTCATCACTTCTCACTCTTCTCTGTTAATTGCAGTATCAACTTAATCGGCAATCGATTTCATTTTATTTACAGAGCTGTGACTCGTTCCAGGAACATCAAATTAGTTGTTGTTATTGTCTTTTCTGATTCCAAAGGTATGCACATTTTCCATGGCTGTTTTTGTTTTCCTGATAGAAGAGTGTGTTATTTCTTTCTTTTTATACTTACGTATACATTTAAGATTTCATTGCAGATGATATCGACGAGGATCGAATGATTGCTTTAAGCAAACATGTCGTCTTTGTTAAACCTAACAATGCTACATAA

mRNA sequence

ATGGAGGTGGCGCCGCCGCCTTTCCGGTCGGAAAGAGTGAAAGGGGAAAGAAGGCGAGTCGGTTTAAAGCAGGAAAGGCGGGGGAGGAAAGAAGAGAACGAAAAGATAACAGAGTCTTATATTCCTCCGATCCACACTCTTGCCTTCTTCGACCTCTCCAAGATCATAAAGCCATTGGACTCCTCTGAACCTCCTCTTTCCACTCCCCCTCCCGGTATCTTCAATAGGGATTGGCTTCTTGAGCATCGAACCATGGTTCCTGCTGTCGTTACTGCTCTTTTCCCTTCTCTTCATGTTTCCGGCGATCCTGCCCAGTGGCTTCAGCTCTGCTCCGATCTCGATCACCTCAAAGCTGTGACTCGTTCCAGGAACATCAAATTAGTTGTTGTTATTGTCTTTTCTGATTCCAAAGATGATATCGACGAGGATCGAATGATTGCTTTAAGCAAACATGTCGTCTTTGTTAAACCTAACAATGCTACATAA

Coding sequence (CDS)

ATGGAGGTGGCGCCGCCGCCTTTCCGGTCGGAAAGAGTGAAAGGGGAAAGAAGGCGAGTCGGTTTAAAGCAGGAAAGGCGGGGGAGGAAAGAAGAGAACGAAAAGATAACAGAGTCTTATATTCCTCCGATCCACACTCTTGCCTTCTTCGACCTCTCCAAGATCATAAAGCCATTGGACTCCTCTGAACCTCCTCTTTCCACTCCCCCTCCCGGTATCTTCAATAGGGATTGGCTTCTTGAGCATCGAACCATGGTTCCTGCTGTCGTTACTGCTCTTTTCCCTTCTCTTCATGTTTCCGGCGATCCTGCCCAGTGGCTTCAGCTCTGCTCCGATCTCGATCACCTCAAAGCTGTGACTCGTTCCAGGAACATCAAATTAGTTGTTGTTATTGTCTTTTCTGATTCCAAAGATGATATCGACGAGGATCGAATGATTGCTTTAAGCAAACATGTCGTCTTTGTTAAACCTAACAATGCTACATAA

Protein sequence

MEVAPPPFRSERVKGERRRVGLKQERRGRKEENEKITESYIPPIHTLAFFDLSKIIKPLDSSEPPLSTPPPGIFNRDWLLEHRTMVPAVVTALFPSLHVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVFSDSKDDIDEDRMIALSKHVVFVKPNNAT

Homology

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BLAST of CmaCh03G006140 vs. TrEMBL
Match: A0A0A0KJQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510220 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.6e-47
Identity = 102/133 (76.69%), Postives = 109/133 (81.95%), Query Frame = 1


Query: 42  PPIHTLAFFDLSKII------KPLDSSEPPLSTPPPGIFNRDWLLEHRTMVPAVVTALFP 101
           PPIHTLAF DLSKI        P DSSEPP S+PPPGIF RDWLL+HRT VPAVV ALFP
Sbjct: 37  PPIHTLAFPDLSKISFLLPPPSPNDSSEPPPSSPPPGIFKRDWLLKHRTKVPAVVAALFP 96

Query: 102 SLHVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVFSDSKDDIDEDRMIAL------- 161
           S HVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVV+IV SDSKDDI+EDRMIAL       
Sbjct: 97  SHHVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVIIVHSDSKDDINEDRMIALRKRAEVD 156

[Close]

BLAST of CmaCh03G006140 vs. TrEMBL
Match: F6I0C3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01720 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.1e-29
Identity = 68/109 (62.39%), Postives = 82/109 (75.23%), Query Frame = 1


Query: 42  PPIHTLAFFDLSKIIKPLDSSEPPLSTPPPGIFNRDWLLEHRTMVPAVVTALFPSLHVSG 101
           PPI+TLA  D S I   ++ S   +  P  GI  RDWLL+HRT +PAVV ALF S H+SG
Sbjct: 37  PPINTLALPDFSAI-SIMNRSNKEIHVPVAGILKRDWLLKHRTRIPAVVAALFTSDHISG 96

Query: 102 DPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVFSDSKDDIDEDRMIALSK 151
           DPAQWLQLC+ +++LKAV R+RNIKLV+V+V S SKDDI EDRMIAL K
Sbjct: 97  DPAQWLQLCTHVENLKAVVRARNIKLVLVVVQSTSKDDISEDRMIALRK 144

[Close]

BLAST of CmaCh03G006140 vs. TrEMBL
Match: A0A0K9QRX5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_153250 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.3e-29
Identity = 71/114 (62.28%), Postives = 84/114 (73.68%), Query Frame = 1


Query: 42  PPIHTLAFFDLSKI---IKPLDSSEPPLSTPPPGIFNRDWLLEHRTMVPAVVTALFPSLH 101
           PPI+TLA  D  KI    K  DS++  LS+PP GI  RDWLL+HRT +PAV  ALF S H
Sbjct: 37  PPINTLALPDFDKISVFAKRKDSAD--LSSPPAGILKRDWLLKHRTKIPAVAVALFSSDH 96

Query: 102 VSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVFSDSKDDIDEDRMIALSKHV 153
           VSGDPAQWLQL + +DHLKAV R+RN KLVVV+V S  +DD++EDRM AL K V
Sbjct: 97  VSGDPAQWLQLSTLIDHLKAVIRTRNTKLVVVVVQSSPEDDMNEDRMAALRKRV 148

[Close]

BLAST of CmaCh03G006140 vs. TrEMBL
Match: W9SFS2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022832 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-28
Identity = 72/114 (63.16%), Postives = 84/114 (73.68%), Query Frame = 1


Query: 42  PPIHTLAFFDLSKII-----KPLDSSEPPLSTPPPGIFNRDWLLEHRTMVPAVVTALFPS 101
           PPI++LA  DLSKI      KP D   P  +  P GI  RDWLL+HRT +P+VV A F S
Sbjct: 37  PPINSLALPDLSKISLLIASKPKDDQIPRPN--PDGILKRDWLLKHRTKIPSVVAAFFSS 96

Query: 102 LHVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVFSDSKDDIDEDRMIALSK 151
             VSGDPAQWLQLCSDLD+LKAV R+RNI+LV+V+V S SKDDI EDRM+AL K
Sbjct: 97  DCVSGDPAQWLQLCSDLDNLKAVIRARNIRLVLVVVHSHSKDDITEDRMLALRK 148

[Close]

BLAST of CmaCh03G006140 vs. TrEMBL
Match: V7CDJ9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G271600g PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-28
Identity = 71/131 (54.20%), Postives = 94/131 (71.76%), Query Frame = 1


Query: 42  PPIHTLAFFDLSKIIKPLDS-SEP-PLSTPP----PGIFNRDWLLEHRTMVPAVVTALFP 101
           PPI+TLA  D+SKII   ++ ++P P +T P    PGIF RDWLL+HRT  P+++ ALFP
Sbjct: 37  PPINTLALPDVSKIIHLFNNKTDPDPTATSPSPIVPGIFKRDWLLKHRTKFPSLLGALFP 96

Query: 102 SLHVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVFSDSKDDIDEDRMIAL------- 160
           S H++GDPAQWLQLCSDLD +KAV R RNIK  VV+V  ++  +I EDRMIAL       
Sbjct: 97  SHHLTGDPAQWLQLCSDLDSIKAVIRGRNIKFAVVVVVDNNAAEISEDRMIALRKRAEVD 156

[Close]

BLAST of CmaCh03G006140 vs. TAIR10
Match: AT5G65950.1 (AT5G65950.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-28
Identity = 69/134 (51.49%), Postives = 83/134 (61.94%), Query Frame = 1


Query: 35  KITESYIPPIHTLAFFDLSKI---------IKPLDSSEPPLS-----TPPP----GIFNR 94
           K   S  PPI+ LAF D S+I         I    S   PLS     +P P    GI  R
Sbjct: 30  KYLHSQQPPINALAFPDFSQISLLLAHDDQISRTSSFRDPLSVSDSASPIPSRCGGILKR 89

Query: 95  DWLLEHRTMVPAVVTALFPSLHVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVFSDS 151
           DWLL+HRT VPA+V A FPS H+ GDP QWLQ+CSDLD LK+V R +NIKLVVV+V S  
Sbjct: 90  DWLLKHRTKVPALVAAFFPSHHIFGDPTQWLQVCSDLDSLKSVIRPKNIKLVVVVVQSSP 149

[Close]

BLAST of CmaCh03G006140 vs. NCBI nr
Match: gi|449434072|ref|XP_004134820.1| (PREDICTED: trafficking protein particle complex subunit 11 isoform X1 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 3.7e-47
Identity = 102/133 (76.69%), Postives = 109/133 (81.95%), Query Frame = 1


Query: 42  PPIHTLAFFDLSKII------KPLDSSEPPLSTPPPGIFNRDWLLEHRTMVPAVVTALFP 101
           PPIHTLAF DLSKI        P DSSEPP S+PPPGIF RDWLL+HRT VPAVV ALFP
Sbjct: 37  PPIHTLAFPDLSKISFLLPPPSPNDSSEPPPSSPPPGIFKRDWLLKHRTKVPAVVAALFP 96

Query: 102 SLHVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVFSDSKDDIDEDRMIAL------- 161
           S HVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVV+IV SDSKDDI+EDRMIAL       
Sbjct: 97  SHHVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVIIVHSDSKDDINEDRMIALRKRAEVD 156

[Close]

BLAST of CmaCh03G006140 vs. NCBI nr
Match: gi|659080700|ref|XP_008440933.1| (PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 11 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 9.2e-46
Identity = 100/133 (75.19%), Postives = 107/133 (80.45%), Query Frame = 1


Query: 42  PPIHTLAFFDLSKII------KPLDSSEPPLSTPPPGIFNRDWLLEHRTMVPAVVTALFP 101
           PPIHTLAF DLSKI        P DSSE  LS+PPPGIF RDWLL+HRT VPAVV ALFP
Sbjct: 37  PPIHTLAFPDLSKISFLLPPPSPKDSSESSLSSPPPGIFKRDWLLKHRTKVPAVVAALFP 96

Query: 102 SLHVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVFSDSKDDIDEDRMIAL------- 161
           S HVSGDPAQWLQLCSDLDHLK VTRSRNIKLVV+IV SDSKDDI+EDRMIAL       
Sbjct: 97  SHHVSGDPAQWLQLCSDLDHLKTVTRSRNIKLVVIIVHSDSKDDINEDRMIALRKRAEVD 156

[Close]

BLAST of CmaCh03G006140 vs. NCBI nr
Match: gi|502153806|ref|XP_004509469.1| (PREDICTED: trafficking protein particle complex subunit 11 isoform X1 [Cicer arietinum])

HSP 1 Score: 135.6 bits (340), Expect = 7.8e-29
Identity = 70/133 (52.63%), Postives = 91/133 (68.42%), Query Frame = 1


Query: 42  PPIHTLAFFDLSKII----KPLDSSEPPLSTPPP----GIFNRDWLLEHRTMVPAVVTAL 101
           PPI+TLA  DLSKI     K  D      ++ PP    GI  RDWLL HRT +P+VV ++
Sbjct: 37  PPINTLALPDLSKINLFNKKKSDPDSTTATSSPPFIVNGILKRDWLLNHRTKIPSVVASI 96

Query: 102 FPSLHVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVFSDSKDDIDEDRMIAL----- 160
           FPS HV GDPAQWLQ+CSDLD +K+V R RNIKLVVV+V +++ D++ EDRMIAL     
Sbjct: 97  FPSNHVFGDPAQWLQVCSDLDSIKSVIRGRNIKLVVVLVHTNANDEVSEDRMIALRKRAE 156

[Close]

BLAST of CmaCh03G006140 vs. NCBI nr
Match: gi|296088513|emb|CBI37504.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 68/109 (62.39%), Postives = 82/109 (75.23%), Query Frame = 1


Query: 42  PPIHTLAFFDLSKIIKPLDSSEPPLSTPPPGIFNRDWLLEHRTMVPAVVTALFPSLHVSG 101
           PPI+TLA  D S I   ++ S   +  P  GI  RDWLL+HRT +PAVV ALF S H+SG
Sbjct: 37  PPINTLALPDFSAI-SIMNRSNKEIHVPVAGILKRDWLLKHRTRIPAVVAALFTSDHISG 96

Query: 102 DPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVFSDSKDDIDEDRMIALSK 151
           DPAQWLQLC+ +++LKAV R+RNIKLV+V+V S SKDDI EDRMIAL K
Sbjct: 97  DPAQWLQLCTHVENLKAVVRARNIKLVLVVVQSTSKDDISEDRMIALRK 144

[Close]

BLAST of CmaCh03G006140 vs. NCBI nr
Match: gi|698437126|ref|XP_009803015.1| (PREDICTED: trafficking protein particle complex subunit 11 isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 75/114 (65.79%), Postives = 86/114 (75.44%), Query Frame = 1


Query: 42  PPIHTLAFFDLSKI---IKPL-DSSEPPLSTPPPGIFNRDWLLEHRTMVPAVVTALFPSL 101
           PPI+ LA  D SKI    KP  D+S PP   P  GI  RDWLL+HRT VPAVV ALF S 
Sbjct: 37  PPINALALPDFSKISIIAKPSKDTSAPP--QPVTGILKRDWLLKHRTRVPAVVAALFRSD 96

Query: 102 HVSGDPAQWLQLCSDLDHLKAVTRSRNIKLVVVIVF-SDSKDDIDEDRMIALSK 151
           HVSGDPAQWLQ+C+DL++LKAV R RN+KLVVV+V  S+SKDD+ EDRMIAL K
Sbjct: 97  HVSGDPAQWLQVCTDLENLKAVLRGRNVKLVVVVVAPSNSKDDLSEDRMIALRK 148

The following BLAST results are available for this feature:

BLAST of CmaCh03G006140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G006140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJQ1_CUCSA	2.6e-47	76.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510220 PE=4 SV=1	[more]
F6I0C3_VITVI	7.1e-29	62.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01720 PE=4 SV=...	[more]
A0A0K9QRX5_SPIOL	9.3e-29	62.28	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_153250 PE=4 SV=1	[more]
W9SFS2_9ROSA	1.2e-28	63.16	Uncharacterized protein OS=Morus notabilis GN=L484_022832 PE=4 SV=1	[more]
V7CDJ9_PHAVU	1.2e-28	54.20	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G271600g PE=4 SV=1	[more]

BLAST of CmaCh03G006140 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65950.1	1.8e-28	51.49	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmaCh03G006140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434072\|ref\|XP_004134820.1\|	3.7e-47	76.69	PREDICTED: trafficking protein particle complex subunit 11 isoform X1 [Cucumis s...	[more]
gi\|659080700\|ref\|XP_008440933.1\|	9.2e-46	75.19	PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 11 ...	[more]
gi\|502153806\|ref\|XP_004509469.1\|	7.8e-29	52.63	PREDICTED: trafficking protein particle complex subunit 11 isoform X1 [Cicer ari...	[more]
gi\|296088513\|emb\|CBI37504.3\|	1.0e-28	62.39	unnamed protein product [Vitis vinifera]	[more]
gi\|698437126\|ref\|XP_009803015.1\|	1.0e-28	65.79	PREDICTED: trafficking protein particle complex subunit 11 isoform X1 [Nicotiana...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044699	single-organism process
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0044723	single-organism carbohydrate metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G006140.1	CmaCh03G006140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14374	FOIE GRAS	coord: 58..148 score: 3.9
None	No IPR available	PANTHER	PTHR14374:SF0	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 11	coord: 58..148 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G006140	Cucsa.044340	Cucumber (Gy14) v1	cgycmaB0047
CmaCh03G006140	Cla014361	Watermelon (97103) v1	cmawmB632
CmaCh03G006140	Csa6G510220	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G006140	MELO3C007983	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G006140	ClCG01G020980	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G006140	CSPI06G32540	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G006140	CmoCh07G003720	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G006140	CmoCh03G006440	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G006140	Lsi01G005230	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G006140	Cp4.1LG10g10420	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G006140	Cp4.1LG19g08260	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G006140	MELO3C007982.2	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G006140	CsaV3_6G047940	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G006140	Cla97C01G020540	Watermelon (97103) v2	cmawmbB670
CmaCh03G006140	CsGy6G032170	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G006140	Carg07908	Silver-seed gourd	carcmaB0912

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh03G006140	CmaCh07G003770	Cucurbita maxima (Rimu)	cmacmaB523

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G006140	Wax gourd	cmawgoB0788
CmaCh03G006140	Silver-seed gourd	carcmaB0567