CmaCh03G005580 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G005580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L2, chloroplastic
Location	Cma_Chr03 : 5174778 .. 5175956 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCGCCATCCTATTAAGTATTTTGATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCACAAGCGTCTATACCGTAAAATCGATTTTCGACGAAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAAAATGACTCTAATCAAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATCTTTTACATCCCAGAGGGGCTATAATTGGAGATATCATTGTTTCTGTTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCTGTTTGAACTATTGATTTACGTATTTGGAAGTAACCAATTAGGTTTAGGACGAAACCTAGAAATCGATCACCGATCCAATTTGAGTACCTCAACAGAATAGACCTCAATAGAAAACTGAAGAGTAACGACAACAAGTGATTGAGTTCAGTTGTTTCTCATATAAAATTATCGACTCTAGAGATATAGTAATATGGAGAATACTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGTCCCTTGTTTCAAAGAGAGGAGGACGGGTTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAACAGTGGTAATTCAAAGGATTCCCGAGGGGAAAAATAGAAATGTCTCCTACGTTACCCGTAATATGTAGAAGTATCGACGTAATTTCATAGAACATAAGCAAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGGGGATTTGGATTCCTATATATCTACTCATGTGGTACTTCATTGGACGATATATATAAGATCCATATGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGAAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATGGATCAAAAAGAAGAATGTAAAAGAGAGAAAATCGGCCACATTAAAATTACTTTATAGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGAATGCTGAGGTAAACCTATTATTATTATTATTATTATTTGAAATTTTTTCTAAGTTATGATATCCAGTAACAAAATTGATTACGAAATCGTTTGGAAGTTGCTTCGTGAATCTGGATCATCCTAA

mRNA sequence

ATGTATCGCCATCCTATTAAGTATTTTGATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCACAAGCGTCTATACCGTAAAATCGATTTTCGACGAAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAAAATGACTCTAATCAAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATCTTTTACATCCCAGAGGGGCTATAATTGGAGATATCATTGTTTCTGTTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCTAATGTAAAAGAGAGAAAATCGGCCACATTAAAATTACTTTATAGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGAATGCTGAGTAACAAAATTGATTACGAAATCGTTTGGAAGTTGCTTCGTGAATCTGGATCATCCTAA

Coding sequence (CDS)

ATGTATCGCCATCCTATTAAGTATTTTGATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCACAAGCGTCTATACCGTAAAATCGATTTTCGACGAAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAAAATGACTCTAATCAAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATCTTTTACATCCCAGAGGGGCTATAATTGGAGATATCATTGTTTCTGTTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCTAATGTAAAAGAGAGAAAATCGGCCACATTAAAATTACTTTATAGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGAATGCTGAGTAACAAAATTGATTACGAAATCGTTTGGAAGTTGCTTCGTGAATCTGGATCATCCTAA

Protein sequence

MYRHPIKYFDLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAYICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANVKERKSATLKLLYREVRLISKNCSATVGQVGMLSNKIDYEIVWKLLRESGSS

Homology

[Close]

BLAST of CmaCh03G005580 vs. Swiss-Prot
Match: RK2B_COFAR (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.7e-59
Identity = 121/168 (72.02%), Postives = 125/168 (74.40%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRR EKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRTEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSAN--------------- 129
           ICLIHYGDGEKRY+LHPRGA+IGD IVS TEVPIKMGNALPLSA                
Sbjct: 89  ICLIHYGDGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSATDMPLGTAIHNIEITL 148

Query: 130 -----------------VKERKSATLKLLYREVRLISKNCSATVGQVG 146
                             KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 196

[Close]

BLAST of CmaCh03G005580 vs. Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.5e-59
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSAN--------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGK 148

Query: 130 ---------------VKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. Swiss-Prot
Match: RK2_VITVI (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.5e-59
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSAN--------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGK 148

Query: 130 ---------------VKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.5e-59
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSAN--------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITRGR 148

Query: 130 ---------------VKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.5e-59
Identity = 121/166 (72.89%), Postives = 125/166 (75.30%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSAN--------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGK 148

Query: 130 ---------------VKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. TrEMBL
Match: A0A0H3U625_9GENT (50S ribosomal protein L2, chloroplastic OS=Gentiana crassicaulis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.6e-58
Identity = 128/187 (68.45%), Postives = 135/187 (72.19%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPLS ++              
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTDMPLGTAIHNIEITLG 148

Query: 130 -----------------KERKSATLKLLYREVRLISKNCSATVGQVGMLSNKIDYEIVWK 166
                            KE KSATLKL   EVRLISKNCSATVGQVG L      E+  K
Sbjct: 149 RGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNL------EVNQK 208

[Close]

BLAST of CmaCh03G005580 vs. TrEMBL
Match: A0A0H3U5D3_9GENT (50S ribosomal protein L2, chloroplastic OS=Gentiana straminea GN=rpl2 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 2.6e-58
Identity = 128/187 (68.45%), Postives = 135/187 (72.19%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPLS ++              
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTDMPLGTAIHNIEITLG 148

Query: 130 -----------------KERKSATLKLLYREVRLISKNCSATVGQVGMLSNKIDYEIVWK 166
                            KE KSATLKL   EVRLISKNCSATVGQVG L      E+  K
Sbjct: 149 RGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNL------EVNQK 208

[Close]

BLAST of CmaCh03G005580 vs. TrEMBL
Match: A0A166GJT5_COFCA (Ribosomal protein L2 OS=Coffea canephora GN=rpl2 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.8e-58
Identity = 122/167 (73.05%), Postives = 128/167 (76.65%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-------------- 129
           ICLIHYGDGEKRY+LHPRGA+IGD IVS TEVPIKMGNALPLSA++              
Sbjct: 89  ICLIHYGDGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSADMPLGTAIHNIEITLG 148

Query: 130 -----------------KERKSATLKLLYREVRLISKNCSATVGQVG 146
                            KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 195

[Close]

BLAST of CmaCh03G005580 vs. TrEMBL
Match: A0A0S0ZJY9_9ASTE (Rpl2 (Fragment) OS=Iodes liberica GN=rpl2 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.8e-58
Identity = 122/167 (73.05%), Postives = 127/167 (76.05%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPLS ++              
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTDMPLGTAIHNIEITLG 148

Query: 130 -----------------KERKSATLKLLYREVRLISKNCSATVGQVG 146
                            KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 195

[Close]

BLAST of CmaCh03G005580 vs. TrEMBL
Match: A0A0S2IEE7_9ROSI (Ribosomal protein L2 OS=Cucurbita argyrosperma subsp. sororia GN=rpl2 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.8e-58
Identity = 122/167 (73.05%), Postives = 127/167 (76.05%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPLS ++              
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTDMPLGTAIHNIEITLG 148

Query: 130 -----------------KERKSATLKLLYREVRLISKNCSATVGQVG 146
                            KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 195

[Close]

BLAST of CmaCh03G005580 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 217.2 bits (552), Expect = 7.4e-57
Identity = 117/166 (70.48%), Postives = 121/166 (72.89%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LI GQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIE D N+NAY
Sbjct: 29  NLICGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSAN--------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGR 148

Query: 130 ---------------VKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 217.2 bits (552), Expect = 7.4e-57
Identity = 117/166 (70.48%), Postives = 121/166 (72.89%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LI GQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIE D N+NAY
Sbjct: 29  NLICGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSAN--------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPL+                 
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGR 148

Query: 130 ---------------VKERKSATLKLLYREVRLISKNCSATVGQVG 146
                           KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 GGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 194

[Close]

BLAST of CmaCh03G005580 vs. NCBI nr
Match: gi|884997192|ref|YP_009154992.1| (ribosomal protein L2 (chloroplast) [Gentiana straminea])

HSP 1 Score: 233.0 bits (593), Expect = 3.7e-58
Identity = 128/187 (68.45%), Postives = 135/187 (72.19%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPLS ++              
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTDMPLGTAIHNIEITLG 148

Query: 130 -----------------KERKSATLKLLYREVRLISKNCSATVGQVGMLSNKIDYEIVWK 166
                            KE KSATLKL   EVRLISKNCSATVGQVG L      E+  K
Sbjct: 149 RGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNL------EVNQK 208

[Close]

BLAST of CmaCh03G005580 vs. NCBI nr
Match: gi|1002161165|ref|YP_009231289.1| (ribosomal protein L2 (chloroplast) [Tetrastigma hemsleyanum])

HSP 1 Score: 231.1 bits (588), Expect = 1.4e-57
Identity = 122/167 (73.05%), Postives = 127/167 (76.05%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPLS ++              
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTDMPLGTAIHNIEITLG 148

Query: 130 -----------------KERKSATLKLLYREVRLISKNCSATVGQVG 146
                            KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 195

[Close]

BLAST of CmaCh03G005580 vs. NCBI nr
Match: gi|937634336|gb|ALI90748.1| (Rpl2, partial (chloroplast) [Icacina mannii])

HSP 1 Score: 231.1 bits (588), Expect = 1.4e-57
Identity = 122/167 (73.05%), Postives = 127/167 (76.05%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPLS ++              
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTDMPLGTAIHNIEITLG 148

Query: 130 -----------------KERKSATLKLLYREVRLISKNCSATVGQVG 146
                            KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 195

[Close]

BLAST of CmaCh03G005580 vs. NCBI nr
Match: gi|584458783|gb|AHI95907.1| (ribosomal protein L2 (chloroplast) [Cercis canadensis])

HSP 1 Score: 231.1 bits (588), Expect = 1.4e-57
Identity = 122/167 (73.05%), Postives = 127/167 (76.05%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPLS ++              
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTDMPLGTAIHNIEITLG 148

Query: 130 -----------------KERKSATLKLLYREVRLISKNCSATVGQVG 146
                            KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 195

[Close]

BLAST of CmaCh03G005580 vs. NCBI nr
Match: gi|306486163|gb|ADM92727.1| (ribosomal protein L2 [Davidia involucrata])

HSP 1 Score: 231.1 bits (588), Expect = 1.4e-57
Identity = 122/167 (73.05%), Postives = 127/167 (76.05%), Query Frame = 1


Query: 10  DLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIENDSNQNAY 69
           +LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIE D N+NAY
Sbjct: 29  NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAY 88

Query: 70  ICLIHYGDGEKRYLLHPRGAIIGDIIVSVTEVPIKMGNALPLSANV-------------- 129
           ICLIHYGDGEKRY+LHPRGAIIGD IVS TEVPIKMGNALPLS ++              
Sbjct: 89  ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSTDMPLGTAIHNIEITLG 148

Query: 130 -----------------KERKSATLKLLYREVRLISKNCSATVGQVG 146
                            KE KSATLKL   EVRLISKNCSATVGQVG
Sbjct: 149 KGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVG 195

The following BLAST results are available for this feature:

BLAST of CmaCh03G005580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK2B_COFAR	5.7e-59	72.02	50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica GN=rpl2-B PE=3 SV=1	[more]
RK2_CUCSA	7.5e-59	72.89	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1	[more]
RK2_VITVI	7.5e-59	72.89	50S ribosomal protein L2, chloroplastic OS=Vitis vinifera GN=rpl2-A PE=3 SV=1	[more]
RK2_DAUCA	7.5e-59	72.89	50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1	[more]
RK2_CITSI	7.5e-59	72.89	50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1	[more]

BLAST of CmaCh03G005580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0H3U625_9GENT	2.6e-58	68.45	50S ribosomal protein L2, chloroplastic OS=Gentiana crassicaulis GN=rpl2 PE=3 SV...	[more]
A0A0H3U5D3_9GENT	2.6e-58	68.45	50S ribosomal protein L2, chloroplastic OS=Gentiana straminea GN=rpl2 PE=3 SV=1	[more]
A0A166GJT5_COFCA	5.8e-58	73.05	Ribosomal protein L2 OS=Coffea canephora GN=rpl2 PE=4 SV=1	[more]
A0A0S0ZJY9_9ASTE	9.8e-58	73.05	Rpl2 (Fragment) OS=Iodes liberica GN=rpl2 PE=3 SV=1	[more]
A0A0S2IEE7_9ROSI	9.8e-58	73.05	Ribosomal protein L2 OS=Cucurbita argyrosperma subsp. sororia GN=rpl2 PE=3 SV=1	[more]

BLAST of CmaCh03G005580 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00830.1	7.4e-57	70.48	ATCG00830.1 ribosomal protein L2	[more]
ATCG01310.1	7.4e-57	70.48	ATCG01310.1 ribosomal protein L2	[more]

BLAST of CmaCh03G005580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|884997192\|ref\|YP_009154992.1\|	3.7e-58	68.45	ribosomal protein L2 (chloroplast) [Gentiana straminea]	[more]
gi\|1002161165\|ref\|YP_009231289.1\|	1.4e-57	73.05	ribosomal protein L2 (chloroplast) [Tetrastigma hemsleyanum]	[more]
gi\|937634336\|gb\|ALI90748.1\|	1.4e-57	73.05	Rpl2, partial (chloroplast) [Icacina mannii]	[more]
gi\|584458783\|gb\|AHI95907.1\|	1.4e-57	73.05	ribosomal protein L2 (chloroplast) [Cercis canadensis]	[more]
gi\|306486163\|gb\|ADM92727.1\|	1.4e-57	73.05	ribosomal protein L2 [Davidia involucrata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002171	Ribosomal_L2
IPR012340	NA-bd_OB-fold
IPR014722	Rib_L2_dom2
IPR022666	Rbsml_prot_L2_RNA-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G005580.1	CmaCh03G005580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 10..145 score: 1.3
IPR002171	Ribosomal protein L2	SMART	SM01383	Ribosomal_L2_2	coord: 21..97 score: 1.4
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 10..93 score: 1.1
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 10..104 score: 4.8
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 116..144 score: 1.
IPR022666	Ribosomal Proteins L2, RNA binding domain	PFAM	PF00181	Ribosomal_L2	coord: 21..97 score: 5.1
None	No IPR available	PANTHER	PTHR13691:SF21	SUBFAMILY NOT NAMED	coord: 10..145 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G005580	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G005580	Melon (DHL92) v3.6.1	cmamedB694
CmaCh03G005580	Silver-seed gourd	carcmaB0912
CmaCh03G005580	Silver-seed gourd	carcmaB1276
CmaCh03G005580	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G005580	Watermelon (97103) v2	cmawmbB670
CmaCh03G005580	Wax gourd	cmawgoB0788
CmaCh03G005580	Cucurbita maxima (Rimu)	cmacmaB233
CmaCh03G005580	Cucurbita maxima (Rimu)	cmacmaB399
CmaCh03G005580	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh03G005580	Cucumber (Gy14) v1	cgycmaB0047
CmaCh03G005580	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G005580	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G005580	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G005580	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G005580	Melon (DHL92) v3.5.1	cmameB611
CmaCh03G005580	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G005580	Watermelon (97103) v1	cmawmB632
CmaCh03G005580	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G005580	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G005580	Cucurbita pepo (Zucchini)	cmacpeB676
CmaCh03G005580	Bottle gourd (USVL1VR-Ls)	cmalsiB597