CmaCh03G004680 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G004680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA topoisomerase 6 subunit A
LocationCma_Chr03 : 4733481 .. 4734743 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATAAGAGAAAGCGCCGGCGATCTGAACTCAATCCAGACGTTGAAGCTCAACTTCCCTTCAAGAACAGCCTCAAATCTGATTCTATCATTCTTCAGATTCTCAAAGAGTTCAGTGACTGCTCCACCGCCCCATCTTCCTCTTCATCTAAAACCCTCGACGACCTAGGCCTCTCCTCCTCCTGCCGCGAGGTCACCGATCTTTCGCTTTCTTCCGTGCAGTCCACAATTGAAGATCTTATCCTCAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCATTTGATGTTCCTTCTCGATCGGCGGCCAATCAATTGTACGTTCCGGAGCTCGATCGCATCGTTTTGAAAGACAAAACCGCCATTCGACCCTACGCCAATATTTCCACTGTTCGGAAGTCCACCATTACTACTCGCATTCTTCAGCTTGTCCACCAACTTTGCATAAAAAACATCCATGTGACCAAGCGAGATCTGTTCTACACGGATGTAAAGCTCTTCCAGGATCAGACTCAGTCGGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGCTGTACTCGGTCGAGTCTCAATGTGATTGCTGCGGAGAAAGGAGTGGTTGTGGGAAGGCTCATTTTCAGTGACAATGGGGATATGATCGATTGCACTAAAATGGGCATGGGCGGAAAAGCGATTCCGCCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATCCTCTTAGTTGAGAAAGATGCCGCGTATATTAGGTTAGCTGAGGATAGGTTTTACAATCGCTTTCCATGTATTATTGTGACCGCTAAGGGACAACCAGATGTGGCCACGAGATTGTTCTTGAGGAAGATGAAAATGGAGCTGAAGCTCCCAGTGCTTGCGCTTGTAGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGATGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTAGGAATAAGGCCGAGTGATTTGGATAAATATAATATACCGGAGCAGTGCAGGTTACCTATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTTAAAAAGAATCCAGGTTGGGTTGAAGAGCTCACTTTAATGGTGAAGACGAAGCAGAAGGCTGAGATTCAGGCATTGAGCTCATTCGGGTTTCAGTATCTGTCGGAGGTTTATCTGCCATTGAAGCTGCAGCAGAAGGATTGGCTGTGA

mRNA sequence

ATGGCCGATAAGAGAAAGCGCCGGCGATCTGAACTCAATCCAGACGTTGAAGCTCAACTTCCCTTCAAGAACAGCCTCAAATCTGATTCTATCATTCTTCAGATTCTCAAAGAGTTCAGTGACTGCTCCACCGCCCCATCTTCCTCTTCATCTAAAACCCTCGACGACCTAGGCCTCTCCTCCTCCTGCCGCGAGGTCACCGATCTTTCGCTTTCTTCCGTGCAGTCCACAATTGAAGATCTTATCCTCAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCATTTGATGTTCCTTCTCGATCGGCGGCCAATCAATTGTACGTTCCGGAGCTCGATCGCATCGTTTTGAAAGACAAAACCGCCATTCGACCCTACGCCAATATTTCCACTGTTCGGAAGTCCACCATTACTACTCGCATTCTTCAGCTTGTCCACCAACTTTGCATAAAAAACATCCATGTGACCAAGCGAGATCTGTTCTACACGGATGTAAAGCTCTTCCAGGATCAGACTCAGTCGGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGCTGTACTCGGTCGAGTCTCAATGTGATTGCTGCGGAGAAAGGAGTGGTTGTGGGAAGGCTCATTTTCAGTGACAATGGGGATATGATCGATTGCACTAAAATGGGCATGGGCGGAAAAGCGATTCCGCCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATCCTCTTAGTTGAGAAAGATGCCGCGTATATTAGGTTAGCTGAGGATAGGTTTTACAATCGCTTTCCATGTATTATTGTGACCGCTAAGGGACAACCAGATGTGGCCACGAGATTGTTCTTGAGGAAGATGAAAATGGAGCTGAAGCTCCCAGTGCTTGCGCTTGTAGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGATGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTAGGAATAAGGCCGAGTGATTTGGATAAATATAATATACCGGAGCAGTGCAGGTTACCTATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTTAAAAAGAATCCAGGTTGGGTTGAAGAGCTCACTTTAATGGTGAAGACGAAGCAGAAGGCTGAGATTCAGGCATTGAGCTCATTCGGGTTTCAGTATCTGTCGGAGGTTTATCTGCCATTGAAGCTGCAGCAGAAGGATTGGCTGTGA

Coding sequence (CDS)

ATGGCCGATAAGAGAAAGCGCCGGCGATCTGAACTCAATCCAGACGTTGAAGCTCAACTTCCCTTCAAGAACAGCCTCAAATCTGATTCTATCATTCTTCAGATTCTCAAAGAGTTCAGTGACTGCTCCACCGCCCCATCTTCCTCTTCATCTAAAACCCTCGACGACCTAGGCCTCTCCTCCTCCTGCCGCGAGGTCACCGATCTTTCGCTTTCTTCCGTGCAGTCCACAATTGAAGATCTTATCCTCAAAATTGCTCGTTCCATTCTTTCCGGCAATGGTTTTGCATTTGATGTTCCTTCTCGATCGGCGGCCAATCAATTGTACGTTCCGGAGCTCGATCGCATCGTTTTGAAAGACAAAACCGCCATTCGACCCTACGCCAATATTTCCACTGTTCGGAAGTCCACCATTACTACTCGCATTCTTCAGCTTGTCCACCAACTTTGCATAAAAAACATCCATGTGACCAAGCGAGATCTGTTCTACACGGATGTAAAGCTCTTCCAGGATCAGACTCAGTCGGATTCTGTGCTTGATGATGTTTCTTGCATTCTCGGCTGTACTCGGTCGAGTCTCAATGTGATTGCTGCGGAGAAAGGAGTGGTTGTGGGAAGGCTCATTTTCAGTGACAATGGGGATATGATCGATTGCACTAAAATGGGCATGGGCGGAAAAGCGATTCCGCCAAATATTGATAGAGTTGGAGATATGCAGAGTGATGCATTGTTTATCCTCTTAGTTGAGAAAGATGCCGCGTATATTAGGTTAGCTGAGGATAGGTTTTACAATCGCTTTCCATGTATTATTGTGACCGCTAAGGGACAACCAGATGTGGCCACGAGATTGTTCTTGAGGAAGATGAAAATGGAGCTGAAGCTCCCAGTGCTTGCGCTTGTAGACAGTGATCCATATGGGTTGAAGATTCTATCTGTCTATGGATGTGGATCAAAGAATATGTCTTATGACAGTGCTAATTTGACTACTCCTGATATCAAGTGGCTAGGAATAAGGCCGAGTGATTTGGATAAATATAATATACCGGAGCAGTGCAGGTTACCTATGACAGAGCAGGATATTAAGACTGGGAAAGATCTGTTAGAGGAAGATTTTGTTAAAAAGAATCCAGGTTGGGTTGAAGAGCTCACTTTAATGGTGAAGACGAAGCAGAAGGCTGAGATTCAGGCATTGAGCTCATTCGGGTTTCAGTATCTGTCGGAGGTTTATCTGCCATTGAAGCTGCAGCAGAAGGATTGGCTGTGA

Protein sequence

MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLSSSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Homology
[Close]
BLAST of CmaCh03G004680 vs. Swiss-Prot
Match: TOP6A_ARATH (DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1 SV=1)

HSP 1 Score: 700.7 bits (1807), Expect = 9.9e-201
Identity = 359/429 (83.68%), Postives = 394/429 (91.84%), Query Frame = 1 

Query: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCST-------APSSSSSK- 60
           MADK+KR+RS+   D   +LPFK+ L+SD +I ++LK +   S          SSSSSK 
Sbjct: 1   MADKKKRKRSK--DDEAEELPFKSILESDDVITELLKSYISSSIKAAAGAGGASSSSSKP 60

Query: 61  -TLDDLGLSSSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVP 120
            TL DL LSSSCREV DLSLSSVQ+ IE +I++IARSIL+G+GF+F VPSR+A+NQLYVP
Sbjct: 61  LTLADLSLSSSCREVADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYVP 120

Query: 121 ELDRIVLKDKTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQD 180
           ELDRIVLKDK+ +RP+A++S+VRK+TITTRIL L+HQLC++NIHVTKRDLFYTDVKLFQD
Sbjct: 121 ELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQD 180

Query: 181 QTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240
           QTQSD+VLDDVSC+LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN
Sbjct: 181 QTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240

Query: 241 IDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME 300
           IDRVGDMQSDA+FILLVEKDAAY+RLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME
Sbjct: 241 IDRVGDMQSDAMFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME 300

Query: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQC 360
           LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQC
Sbjct: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC 360

Query: 361 RLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLP 420
           RLPMTEQDIKTGKD+LEEDFVKKNPGWVEEL LMVKTKQKAEIQALSSFGFQYLSEVYLP
Sbjct: 361 RLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLP 420

[Close]
BLAST of CmaCh03G004680 vs. Swiss-Prot
Match: TOP6A_ORYSI (DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica GN=TOP6A3 PE=1 SV=2)

HSP 1 Score: 565.8 bits (1457), Expect = 3.8e-160
Identity = 288/409 (70.42%), Postives = 345/409 (84.35%), Query Frame = 1 

Query: 23  KNSLKSDSIILQILKEFSDC--------STAPSSSSSKTL---DDLGLSSSCREVTDLSL 82
           ++ L+ D+ IL  L+  +          S++ SSS+SK L   DD   ++S   V D   
Sbjct: 36  RSKLRPDASILATLRSLASACSKSKPAGSSSSSSSASKALAAEDDP--AASYIVVADQDS 95

Query: 83  SSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTAIRPYANIS 142
           +SV S I  L+L  ARSILSG GF+F VPSR+A+NQ+Y+P+LDRIVL  + + RP+AN++
Sbjct: 96  ASVTSRINRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVRRESARPFANVA 155

Query: 143 TVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRS 202
           T RK+TIT R+L LVH +  + IHVTKRDLFYTDVKLF DQ QSD+VLDDVSC+LGCTRS
Sbjct: 156 TARKATITARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAVLDDVSCMLGCTRS 215

Query: 203 SLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKD 262
           SL+V+A+EKGVVVGRL F+D+GD IDCT+MG+GGKAIPPNIDRV  ++SDALFILLVEKD
Sbjct: 216 SLHVVASEKGVVVGRLTFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFILLVEKD 275

Query: 263 AAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILS 322
           AA++RLAEDRFYNRFPCII+TAKGQPDVATRLFLR++K+ELKLPVLALVDSDPYGLKILS
Sbjct: 276 AAFMRLAEDRFYNRFPCIILTAKGQPDVATRLFLRRLKVELKLPVLALVDSDPYGLKILS 335

Query: 323 VYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDIKTGKDLLEEDF 382
           VY CGSKNMSYDSANLTTPDIKWLG+RPSDLDKY +PEQCRLPMT+ DIK GK+LLEEDF
Sbjct: 336 VYMCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDF 395

Query: 383 VKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           VK+N GWV+EL  M++T+QKAEIQALSSFGFQYL+EVYLPLKLQQ+DW+
Sbjct: 396 VKQNEGWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI 442

[Close]
BLAST of CmaCh03G004680 vs. Swiss-Prot
Match: TOP6A_ORYSJ (Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica GN=SPO11-3 PE=2 SV=2)

HSP 1 Score: 565.8 bits (1457), Expect = 3.8e-160
Identity = 288/409 (70.42%), Postives = 345/409 (84.35%), Query Frame = 1 

Query: 23  KNSLKSDSIILQILKEFSDC--------STAPSSSSSKTL---DDLGLSSSCREVTDLSL 82
           ++ L+ D+ IL  L+  +          S++ SSS+SK L   DD   ++S   V D   
Sbjct: 36  RSKLRPDASILATLRSLASACSKSKPAGSSSSSSSASKALAAEDDP--AASYIVVADQDS 95

Query: 83  SSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTAIRPYANIS 142
           +SV S I  L+L  ARSILSG GF+F VPSR+A+NQ+Y+P+LDRIVL  + + RP+AN++
Sbjct: 96  ASVTSRINRLVLAAARSILSGRGFSFAVPSRAASNQVYLPDLDRIVLVRRESARPFANVA 155

Query: 143 TVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILGCTRS 202
           T RK+TIT R+L LVH +  + IHVTKRDLFYTDVKLF DQ QSD+VLDDVSC+LGCTRS
Sbjct: 156 TARKATITARVLSLVHAVLRRGIHVTKRDLFYTDVKLFGDQAQSDAVLDDVSCMLGCTRS 215

Query: 203 SLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKD 262
           SL+V+A+EKGVVVGRL F+D+GD IDCT+MG+GGKAIPPNIDRV  ++SDALFILLVEKD
Sbjct: 216 SLHVVASEKGVVVGRLTFADDGDRIDCTRMGVGGKAIPPNIDRVSGIESDALFILLVEKD 275

Query: 263 AAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILS 322
           AA++RLAEDRFYNRFPCII+TAKGQPDVATRLFLR++K+ELKLPVLALVDSDPYGLKILS
Sbjct: 276 AAFMRLAEDRFYNRFPCIILTAKGQPDVATRLFLRRLKVELKLPVLALVDSDPYGLKILS 335

Query: 323 VYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDIKTGKDLLEEDF 382
           VY CGSKNMSYDSANLTTPDIKWLG+RPSDLDKY +PEQCRLPMT+ DIK GK+LLEEDF
Sbjct: 336 VYMCGSKNMSYDSANLTTPDIKWLGVRPSDLDKYRVPEQCRLPMTDHDIKVGKELLEEDF 395

Query: 383 VKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           VK+N GWV+EL  M++T+QKAEIQALSSFGFQYL+EVYLPLKLQQ+DW+
Sbjct: 396 VKQNEGWVKELETMLRTRQKAEIQALSSFGFQYLTEVYLPLKLQQQDWI 442

[Close]
BLAST of CmaCh03G004680 vs. Swiss-Prot
Match: SPO11_HUMAN (Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.2e-65
Identity = 130/355 (36.62%), Postives = 221/355 (62.25%), Query Frame = 1 

Query: 70  SLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTAIRPYAN 129
           S S V ++IE++I  I  S+      AF + +RS+   +   +   + +      R   +
Sbjct: 43  SSSEVLASIENIIQDIITSLARNEAPAFTIDNRSSWENIKFEDSVGLQMVSHCTTRKIKS 102

Query: 130 IS--TVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILG 189
            S  + +K ++  +IL ++++L   N + TKRD++YTD +LF +QT  D++++D+SC+L 
Sbjct: 103 DSPKSAQKFSLILKILSMIYKLVQSNTYATKRDIYYTDSQLFGNQTVVDNIINDISCMLK 162

Query: 190 CTRSSLNVIAAEKGVVVGRLIF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFIL 249
            +R SL++++  KG++ G L +  ++G  ++CT  G    A+P NI  + ++ +DA F+L
Sbjct: 163 VSRRSLHILSTSKGLIAGNLRYIEEDGTKVNCT-CGATAVAVPSNIQGIRNLVTDAKFVL 222

Query: 250 LVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 309
           +VEKDA + RL +D F N+  PCI++T KG PD+ TRL ++K+     +PV  LVD+DP+
Sbjct: 223 IVEKDATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPH 282

Query: 310 GLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDIKTGKD 369
           G++I+ +Y  GS +MS+++ +LT P I+WLG+ PSDL + N+P+   +P+T++D      
Sbjct: 283 GIEIMCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKLDS 342

Query: 370 LLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           +L   +V   P W +E+ +M  +K KAEIQAL+     YLS VYLP KL+   W+
Sbjct: 343 ILRRPYVTCQPFWRKEMEIMADSKMKAEIQALTFLSSDYLSRVYLPNKLKFGGWI 396

[Close]
BLAST of CmaCh03G004680 vs. Swiss-Prot
Match: SPO11_MOUSE (Meiotic recombination protein SPO11 OS=Mus musculus GN=Spo11 PE=1 SV=2)

HSP 1 Score: 250.8 bits (639), Expect = 2.7e-65
Identity = 133/355 (37.46%), Postives = 216/355 (60.85%), Query Frame = 1 

Query: 70  SLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKDKTAIRPYAN 129
           S S V + IE++I  I +S+      AF + +RS+   +   +   + +  +   R   +
Sbjct: 43  SSSEVLTAIENIIQDIIKSLARNEVPAFTIDNRSSWENIMFDDSVGLRMIPQCTTRKIRS 102

Query: 130 IS--TVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLDDVSCILG 189
            S  +V+K  +  ++L ++++L   + + TKRD++YTD +LF +Q   DS +DD+SC+L 
Sbjct: 103 DSPKSVKKFALILKVLSMIYKLIQSDTYATKRDIYYTDSQLFGNQAAVDSAIDDISCMLK 162

Query: 190 CTRSSLNVIAAEKGVVVGRLIF-SDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFIL 249
             R SL+V++  KG++ G L +  ++G  + CT       A+P NI  +  + +DA F+L
Sbjct: 163 VPRRSLHVLSTSKGLIAGNLRYMEEDGTRVQCT-CSATATAVPTNIQGMQHLITDAKFLL 222

Query: 250 LVEKDAAYIRLAEDRFYNRF-PCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPY 309
           +VEKDA + RL +D F +R  PCI+VT KG PD+ TRL ++K+     +PV  LVD+DPY
Sbjct: 223 IVEKDATFQRLLDDNFCSRMSPCIMVTGKGVPDLNTRLLVKKLWDTFHIPVFTLVDADPY 282

Query: 310 GLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDIKTGKD 369
           G++I+ +Y  GS +MS+++ NLT P I+WLG+ PSD+ + NIP+   +P+T+ D      
Sbjct: 283 GIEIMCIYKYGSMSMSFEAHNLTIPTIRWLGLLPSDIQRLNIPKDSLIPLTKHDQMKLDS 342

Query: 370 LLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           +L+  ++   P W +EL +M  +K KAEIQAL+     YLS VYLP KL+   W+
Sbjct: 343 ILKRPYITYQPLWKKELEMMADSKMKAEIQALTLLSSDYLSRVYLPNKLRFGGWI 396

[Close]
BLAST of CmaCh03G004680 vs. TrEMBL
Match: A0A0A0L216_CUCSA (DNA topoisomerase 6 subunit A OS=Cucumis sativus GN=TOP6A PE=3 SV=1)

HSP 1 Score: 786.2 bits (2029), Expect = 2.0e-224
Identity = 404/420 (96.19%), Postives = 409/420 (97.38%), Query Frame = 1 

Query: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60
           MADKRKRRRSELN + EAQLPFKN LK DS ILQILKE SD STA SSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQ+TIE +ILKIARSILSGNGFAFDVPSRS ANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120

Query: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]
BLAST of CmaCh03G004680 vs. TrEMBL
Match: F6HQV1_VITVI (DNA topoisomerase 6 subunit A OS=Vitis vinifera GN=TOP6A PE=3 SV=1)

HSP 1 Score: 724.2 bits (1868), Expect = 9.3e-206
Identity = 364/420 (86.67%), Postives = 393/420 (93.57%), Query Frame = 1 

Query: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60
           MADK+KRRR++ +   +  LPF+NSLKSD IILQ LK+    S++  ++ + TL DLGL+
Sbjct: 1   MADKKKRRRTDPSDSDQQHLPFRNSLKSDEIILQTLKDLCSSSSSDGATGTLTLSDLGLA 60

Query: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           S+CREV DLSLSSVQSTIE LIL++  SILSG GF+F VPSRS+ANQLYVPELDRIVLKD
Sbjct: 61  STCREVADLSLSSVQSTIETLILRLTHSILSGQGFSFSVPSRSSANQLYVPELDRIVLKD 120

Query: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           K+++RP+AN+STVRKS +TTRILQL+HQLC KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KSSLRPFANVSTVRKSAVTTRILQLIHQLCTKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSC+LGCTRSSLNVIA+EKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMK ELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKTELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY+IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYSIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ+DWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQQDWL 420

[Close]
BLAST of CmaCh03G004680 vs. TrEMBL
Match: A0A059A781_EUCGR (DNA topoisomerase 6 subunit A OS=Eucalyptus grandis GN=TOP6A PE=3 SV=1)

HSP 1 Score: 722.6 bits (1864), Expect = 2.7e-205
Identity = 370/427 (86.65%), Postives = 398/427 (93.21%), Query Frame = 1 

Query: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSK-------T 60
           MA+++KRRR++ + D E +LPFKN LK DS+ILQIL+  S  S+A +SSSS        T
Sbjct: 1   MAERKKRRRADADAD-EDELPFKNRLKPDSVILQILRSLSAASSAAASSSSSAGGGKTLT 60

Query: 61  LDDLGLSSSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPEL 120
           L DL LSS+CREV DLSLSSVQS+IE LIL++ARSIL G+GFAFDVPSRSAANQLYVPEL
Sbjct: 61  LADLALSSTCREVADLSLSSVQSSIEALILRVARSILGGDGFAFDVPSRSAANQLYVPEL 120

Query: 121 DRIVLKDKTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQT 180
           DRIVLKDK  +RP+AN+S+VRKSTIT RILQL+HQLC K+IHVTKRDLFYTDVKLFQDQ+
Sbjct: 121 DRIVLKDKNTLRPFANVSSVRKSTITARILQLIHQLCAKSIHVTKRDLFYTDVKLFQDQS 180

Query: 181 QSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNID 240
           QSDSVLDDVSC+LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNID
Sbjct: 181 QSDSVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNID 240

Query: 241 RVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELK 300
           RVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELK
Sbjct: 241 RVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELK 300

Query: 301 LPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRL 360
           LPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRL
Sbjct: 301 LPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRL 360

Query: 361 PMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLK 420
           PMTEQDIKTGKD+LEEDFVKKNPGWVEEL+LMVKTKQKAEIQALS+FGFQYLSEVYLPLK
Sbjct: 361 PMTEQDIKTGKDMLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSTFGFQYLSEVYLPLK 420

[Close]
BLAST of CmaCh03G004680 vs. TrEMBL
Match: W9S2T3_9ROSA (DNA topoisomerase 6 subunit A OS=Morus notabilis GN=TOP6A PE=3 SV=1)

HSP 1 Score: 717.2 bits (1850), Expect = 1.1e-203
Identity = 367/424 (86.56%), Postives = 396/424 (93.40%), Query Frame = 1 

Query: 1   MADKRKRRRSELNPDV--EAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTL--DD 60
           MADKRKRRR +L+ D   E  +PFKN LK D+ I++ L+  +    + SSSSSKTL  +D
Sbjct: 1   MADKRKRRRPDLSSDDDGEVHIPFKNRLKPDAAIIKTLEGITASLRSSSSSSSKTLTLND 60

Query: 61  LGLSSSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRI 120
           L L+++CREVTDLSL+SVQ +IE L+L IARSIL+G GF+F VPSR AANQLYVPELDRI
Sbjct: 61  LSLANACREVTDLSLASVQCSIESLVLSIARSILAGEGFSFSVPSRGAANQLYVPELDRI 120

Query: 121 VLKDKTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSD 180
           VLKDK+++RPYANISTVRK++ITTRILQLVHQLC+KNIHVTKRDLFYTDVKLFQDQTQSD
Sbjct: 121 VLKDKSSLRPYANISTVRKTSITTRILQLVHQLCLKNIHVTKRDLFYTDVKLFQDQTQSD 180

Query: 181 SVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVG 240
           +VLDDVSC+LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVG
Sbjct: 181 TVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVG 240

Query: 241 DMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPV 300
           DMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPV
Sbjct: 241 DMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPV 300

Query: 301 LALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMT 360
           LAL+DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMT
Sbjct: 301 LALMDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMT 360

Query: 361 EQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ 420
           EQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTK+KAEIQALSSFGFQYLSEVYLPLKLQQ
Sbjct: 361 EQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKKKAEIQALSSFGFQYLSEVYLPLKLQQ 420

[Close]
BLAST of CmaCh03G004680 vs. TrEMBL
Match: A0A067EL21_CITSI (DNA topoisomerase 6 subunit A OS=Citrus sinensis GN=TOP6A PE=3 SV=1)

HSP 1 Score: 713.0 bits (1839), Expect = 2.2e-202
Identity = 366/435 (84.14%), Postives = 394/435 (90.57%), Query Frame = 1 

Query: 1   MADKR---KRRRSELNPDVEAQLPFKNSLKSDSIILQILKEF------------SDCSTA 60
           MADK+   KRRR +   D E++LPFKN LK D  IL+ LK+             +  ST+
Sbjct: 1   MADKKLKQKRRRPDPTSDDESELPFKNILKPDQAILETLKQLFLAATTTTTAAANGASTS 60

Query: 61  PSSSSSKTLDDLGLSSSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAA 120
            SSS   TL DL LS++CREVTDLSLS+VQSTIE LIL+IARSIL+GNGF+F VPSR+++
Sbjct: 61  SSSSKPLTLSDLSLSATCREVTDLSLSAVQSTIETLILQIARSILAGNGFSFQVPSRASS 120

Query: 121 NQLYVPELDRIVLKDKTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTD 180
           NQLYVPELDRIVLKDKT +RP+A++STVRKSTIT +IL L+HQLC++NIHVTKRDLFYTD
Sbjct: 121 NQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTD 180

Query: 181 VKLFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGG 240
           VKLFQDQTQSD+VLDDV+CILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGG
Sbjct: 181 VKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGG 240

Query: 241 KAIPPNIDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL 300
           KAIPPNIDRVGDMQSDA+FILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL
Sbjct: 241 KAIPPNIDRVGDMQSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFL 300

Query: 301 RKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY 360
           RKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY
Sbjct: 301 RKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY 360

Query: 361 NIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYL 420
            IPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEEL LMVKTKQKAEIQALSSFGFQYL
Sbjct: 361 KIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYL 420

[Close]
BLAST of CmaCh03G004680 vs. TAIR10
Match: AT5G02820.1 (AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein)

HSP 1 Score: 700.7 bits (1807), Expect = 5.6e-202
Identity = 359/429 (83.68%), Postives = 394/429 (91.84%), Query Frame = 1 

Query: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCST-------APSSSSSK- 60
           MADK+KR+RS+   D   +LPFK+ L+SD +I ++LK +   S          SSSSSK 
Sbjct: 1   MADKKKRKRSK--DDEAEELPFKSILESDDVITELLKSYISSSIKAAAGAGGASSSSSKP 60

Query: 61  -TLDDLGLSSSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVP 120
            TL DL LSSSCREV DLSLSSVQ+ IE +I++IARSIL+G+GF+F VPSR+A+NQLYVP
Sbjct: 61  LTLADLSLSSSCREVADLSLSSVQTEIETVIVQIARSILAGDGFSFSVPSRAASNQLYVP 120

Query: 121 ELDRIVLKDKTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQD 180
           ELDRIVLKDK+ +RP+A++S+VRK+TITTRIL L+HQLC++NIHVTKRDLFYTDVKLFQD
Sbjct: 121 ELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRNIHVTKRDLFYTDVKLFQD 180

Query: 181 QTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240
           QTQSD+VLDDVSC+LGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN
Sbjct: 181 QTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPN 240

Query: 241 IDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME 300
           IDRVGDMQSDA+FILLVEKDAAY+RLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME
Sbjct: 241 IDRVGDMQSDAMFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKME 300

Query: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQC 360
           LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQC
Sbjct: 301 LKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQC 360

Query: 361 RLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLP 420
           RLPMTEQDIKTGKD+LEEDFVKKNPGWVEEL LMVKTKQKAEIQALSSFGFQYLSEVYLP
Sbjct: 361 RLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLP 420

[Close]
BLAST of CmaCh03G004680 vs. TAIR10
Match: AT3G13170.1 (AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein)

HSP 1 Score: 221.5 bits (563), Expect = 1.0e-57
Identity = 124/314 (39.49%), Postives = 184/314 (58.60%), Query Frame = 1 

Query: 111 PELDRIVLKDKTAIRPYANISTVRKSTIT------TRILQLVHQLCIKNIHVTKRDLFYT 170
           PE D +   DK   +    I T++K   T       R+L +V QL  +N H +KRD++Y 
Sbjct: 48  PEADCLCSSDKPKGQ---EIFTLKKEPQTYRIDMLLRVLLIVQQLLQENRHASKRDIYYM 107

Query: 171 DVKLFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMG 230
               F+ Q+  D  + D+  +  C+R +LNV++   G+V+G L F + G   DC      
Sbjct: 108 HPSAFKAQSIVDRAIGDICILFQCSRYNLNVVSVGNGLVMGWLKFREAGRKFDCLNSLNT 167

Query: 231 GKAIPPNIDRVGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLF 290
              +P  ++ V D+ S A +IL+VEK+  + RLA D F     CI++T +G PDV+TR F
Sbjct: 168 AYPVPVLVEEVEDIVSLAEYILVVEKETVFQRLANDMFCKTNRCIVITGRGYPDVSTRRF 227

Query: 291 LRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDK 350
           LR +  +L LPV  LVD DPYG +IL+ Y  GS  M+YD  +L  PD+KWLG  PSD + 
Sbjct: 228 LRLLMEKLHLPVHCLVDCDPYGFEILATYRFGSMQMAYDIESLRAPDMKWLGAFPSDSEV 287

Query: 351 YNIPEQCRLPMTEQDIKTGKDLLEEDFVKKN-PGWVEELTLMVKTKQKAEIQALSSFGFQ 410
           Y++P+QC LP+TE+D K  + +L   ++K+  P W  EL  M+K   K EI+ALS     
Sbjct: 288 YSVPKQCLLPLTEEDKKRTEAMLLRCYLKREMPQWRLELETMLKRGVKFEIEALSVHSLS 347

Query: 411 YLSEVYLPLKLQQK 418
           +LSEVY+P K++++
Sbjct: 348 FLSEVYIPSKIRRE 358

[Close]
BLAST of CmaCh03G004680 vs. TAIR10
Match: AT1G63990.1 (AT1G63990.1 sporulation 11-2)

HSP 1 Score: 190.3 bits (482), Expect = 2.5e-48
Identity = 111/328 (33.84%), Postives = 187/328 (57.01%), Query Frame = 1 

Query: 101 SRSAANQLYVPELDRIVLKDKTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRD 160
           S S  N+  + ++  I L          N  T +      +++++  Q+ ++   VT+R+
Sbjct: 62  SNSCINKGILTDVSYIFLSTSFTKSSLTNAKTAKAFVRVWKVMEICFQILLQEKRVTQRE 121

Query: 161 LFYT----DVKLFQDQTQSDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNG-DM 220
           LFY         F  Q + +  + DV  +L C+R SL ++A+ +G+V GRL   + G + 
Sbjct: 122 LFYKLLCDSPDYFSSQIEVNRSVQDVVALLRCSRYSLGIMASSRGLVAGRLFLQEPGKEA 181

Query: 221 IDCTKMGMGGKAIPPNIDRVGD--MQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTA 280
           +DC+  G  G AI  +++ + +  M++DA +I++VEK A + RL EDR +N  PC+ +TA
Sbjct: 182 VDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLVEDRVFNHIPCVFITA 241

Query: 281 KGQPDVATRLFLRKMKMEL-KLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDI 340
           KG PD+ATR FL +M      LP+L LVD +P GL IL  +  GS  M  ++      ++
Sbjct: 242 KGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAILCTFKFGSIGMGLEAYRYAC-NV 301

Query: 341 KWLGIRPSDLDKYNIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKA 400
           KW+G+R  DL+   IPE+  +P+  +D +  K LL    +++N  ++EEL+LMV+T ++A
Sbjct: 302 KWIGLRGDDLNL--IPEESLVPLKPKDSQIAKSLLSSKILQEN--YIEELSLMVQTGKRA 361

Query: 401 EIQALSSFGFQYLSEVYLPLKLQQKDWL 421
           EI+AL   G+ YL + Y+  K+ Q  ++
Sbjct: 362 EIEALYCHGYNYLGK-YIATKIVQGKYI 383

[Close]
BLAST of CmaCh03G004680 vs. NCBI nr
Match: gi|659068901|ref|XP_008447225.1| (PREDICTED: DNA topoisomerase 6 subunit A [Cucumis melo])

HSP 1 Score: 789.3 bits (2037), Expect = 3.4e-225
Identity = 405/420 (96.43%), Postives = 410/420 (97.62%), Query Frame = 1 

Query: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60
           MADKRKRRRSELNP+ EAQLPFKN LK+DS ILQILKE SD S   SSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNPEDEAQLPFKNKLKADSFILQILKELSDSSAVSSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQ+TIE +ILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120

Query: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]
BLAST of CmaCh03G004680 vs. NCBI nr
Match: gi|449448703|ref|XP_004142105.1| (PREDICTED: DNA topoisomerase 6 subunit A [Cucumis sativus])

HSP 1 Score: 786.2 bits (2029), Expect = 2.9e-224
Identity = 404/420 (96.19%), Postives = 409/420 (97.38%), Query Frame = 1 

Query: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60
           MADKRKRRRSELN + EAQLPFKN LK DS ILQILKE SD STA SSSSSKTLDDLGLS
Sbjct: 1   MADKRKRRRSELNSEDEAQLPFKNKLKPDSFILQILKELSDASTASSSSSSKTLDDLGLS 60

Query: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           SSCREVTDLSLSSVQ+TIE +ILKIARSILSGNGFAFDVPSRS ANQLYVPELDRIVLKD
Sbjct: 61  SSCREVTDLSLSSVQATIESVILKIARSILSGNGFAFDVPSRSGANQLYVPELDRIVLKD 120

Query: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           KTA+RPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KTALRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL+LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420

[Close]
BLAST of CmaCh03G004680 vs. NCBI nr
Match: gi|1009162796|ref|XP_015899626.1| (PREDICTED: DNA topoisomerase 6 subunit A [Ziziphus jujuba])

HSP 1 Score: 743.4 bits (1918), Expect = 2.1e-211
Identity = 382/426 (89.67%), Postives = 402/426 (94.37%), Query Frame = 1 

Query: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDC--STAPSSSSSK----TL 60
           MADK+KRRR + N D E QLPFKNSLK DS+IL+ L++ ++   ST  SSSSS     TL
Sbjct: 40  MADKKKRRRPDPNSDDETQLPFKNSLKPDSLILKSLEDLTNSLRSTTSSSSSSSSKTLTL 99

Query: 61  DDLGLSSSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELD 120
            DL LSSSCREVTDL+LSSVQS+IE LIL++A SILSGNGF+FDVPSRSA NQLYVPELD
Sbjct: 100 ADLSLSSSCREVTDLTLSSVQSSIESLILRLAHSILSGNGFSFDVPSRSAVNQLYVPELD 159

Query: 121 RIVLKDKTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQ 180
           RIVLKDKT++RPYANISTVRKST+TTRILQL+HQLCIKNIHVTKRDLFYTDVKLFQDQTQ
Sbjct: 160 RIVLKDKTSLRPYANISTVRKSTVTTRILQLIHQLCIKNIHVTKRDLFYTDVKLFQDQTQ 219

Query: 181 SDSVLDDVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDR 240
           SDSVLDDVSC+LGCTRSSLNV+AAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDR
Sbjct: 220 SDSVLDDVSCMLGCTRSSLNVVAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDR 279

Query: 241 VGDMQSDALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKL 300
           VGDMQSDALFILLVEKDAAY+RLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKL
Sbjct: 280 VGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKL 339

Query: 301 PVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLP 360
           PVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY IPEQCRLP
Sbjct: 340 PVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLP 399

Query: 361 MTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKL 420
           MTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKL
Sbjct: 400 MTEQDIKTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKL 459

[Close]
BLAST of CmaCh03G004680 vs. NCBI nr
Match: gi|225439757|ref|XP_002274790.1| (PREDICTED: DNA topoisomerase 6 subunit A [Vitis vinifera])

HSP 1 Score: 724.2 bits (1868), Expect = 1.3e-205
Identity = 364/420 (86.67%), Postives = 393/420 (93.57%), Query Frame = 1 

Query: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60
           MADK+KRRR++ +   +  LPF+NSLKSD IILQ LK+    S++  ++ + TL DLGL+
Sbjct: 1   MADKKKRRRTDPSDSDQQHLPFRNSLKSDEIILQTLKDLCSSSSSDGATGTLTLSDLGLA 60

Query: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           S+CREV DLSLSSVQSTIE LIL++  SILSG GF+F VPSRS+ANQLYVPELDRIVLKD
Sbjct: 61  STCREVADLSLSSVQSTIETLILRLTHSILSGQGFSFSVPSRSSANQLYVPELDRIVLKD 120

Query: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           K+++RP+AN+STVRKS +TTRILQL+HQLC KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 121 KSSLRPFANVSTVRKSAVTTRILQLIHQLCTKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSC+LGCTRSSLNVIA+EKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 181 DVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMK ELKLPVLALV
Sbjct: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKTELKLPVLALV 300

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY+IPEQCRLPMTEQDI
Sbjct: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYSIPEQCRLPMTEQDI 360

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ+DWL
Sbjct: 361 KTGKDLLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQQDWL 420

[Close]
BLAST of CmaCh03G004680 vs. NCBI nr
Match: gi|297741485|emb|CBI32617.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 724.2 bits (1868), Expect = 1.3e-205
Identity = 364/420 (86.67%), Postives = 393/420 (93.57%), Query Frame = 1 

Query: 1   MADKRKRRRSELNPDVEAQLPFKNSLKSDSIILQILKEFSDCSTAPSSSSSKTLDDLGLS 60
           MADK+KRRR++ +   +  LPF+NSLKSD IILQ LK+    S++  ++ + TL DLGL+
Sbjct: 44  MADKKKRRRTDPSDSDQQHLPFRNSLKSDEIILQTLKDLCSSSSSDGATGTLTLSDLGLA 103

Query: 61  SSCREVTDLSLSSVQSTIEDLILKIARSILSGNGFAFDVPSRSAANQLYVPELDRIVLKD 120
           S+CREV DLSLSSVQSTIE LIL++  SILSG GF+F VPSRS+ANQLYVPELDRIVLKD
Sbjct: 104 STCREVADLSLSSVQSTIETLILRLTHSILSGQGFSFSVPSRSSANQLYVPELDRIVLKD 163

Query: 121 KTAIRPYANISTVRKSTITTRILQLVHQLCIKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 180
           K+++RP+AN+STVRKS +TTRILQL+HQLC KNIHVTKRDLFYTDVKLFQDQTQSDSVLD
Sbjct: 164 KSSLRPFANVSTVRKSAVTTRILQLIHQLCTKNIHVTKRDLFYTDVKLFQDQTQSDSVLD 223

Query: 181 DVSCILGCTRSSLNVIAAEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 240
           DVSC+LGCTRSSLNVIA+EKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS
Sbjct: 224 DVSCMLGCTRSSLNVIASEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQS 283

Query: 241 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALV 300
           DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMK ELKLPVLALV
Sbjct: 284 DALFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKTELKLPVLALV 343

Query: 301 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYNIPEQCRLPMTEQDI 360
           DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY+IPEQCRLPMTEQDI
Sbjct: 344 DSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYSIPEQCRLPMTEQDI 403

Query: 361 KTGKDLLEEDFVKKNPGWVEELTLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQKDWL 420
           KTGKDLLEEDFVKKNPGWVEEL LMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQ+DWL
Sbjct: 404 KTGKDLLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQQQDWL 463

The following BLAST results are available for this feature:
BLAST of CmaCh03G004680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TOP6A_ARATH9.9e-20183.68DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1 SV=1[more]
TOP6A_ORYSI3.8e-16070.42DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica GN=TOP6A3 PE=1 SV=2[more]
TOP6A_ORYSJ3.8e-16070.42Topoisomerase 6 subunit A3 OS=Oryza sativa subsp. japonica GN=SPO11-3 PE=2 SV=2[more]
SPO11_HUMAN1.2e-6536.62Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2 SV=1[more]
SPO11_MOUSE2.7e-6537.46Meiotic recombination protein SPO11 OS=Mus musculus GN=Spo11 PE=1 SV=2[more]
BLAST of CmaCh03G004680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L216_CUCSA2.0e-22496.19DNA topoisomerase 6 subunit A OS=Cucumis sativus GN=TOP6A PE=3 SV=1[more]
F6HQV1_VITVI9.3e-20686.67DNA topoisomerase 6 subunit A OS=Vitis vinifera GN=TOP6A PE=3 SV=1[more]
A0A059A781_EUCGR2.7e-20586.65DNA topoisomerase 6 subunit A OS=Eucalyptus grandis GN=TOP6A PE=3 SV=1[more]
W9S2T3_9ROSA1.1e-20386.56DNA topoisomerase 6 subunit A OS=Morus notabilis GN=TOP6A PE=3 SV=1[more]
A0A067EL21_CITSI2.2e-20284.14DNA topoisomerase 6 subunit A OS=Citrus sinensis GN=TOP6A PE=3 SV=1[more]
BLAST of CmaCh03G004680 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02820.15.6e-20283.68 Spo11/DNA topoisomerase VI, subunit A protein[more]
AT3G13170.11.0e-5739.49 Spo11/DNA topoisomerase VI, subunit A protein[more]
AT1G63990.12.5e-4833.84 sporulation 11-2[more]
BLAST of CmaCh03G004680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068901|ref|XP_008447225.1|3.4e-22596.43PREDICTED: DNA topoisomerase 6 subunit A [Cucumis melo][more]
gi|449448703|ref|XP_004142105.1|2.9e-22496.19PREDICTED: DNA topoisomerase 6 subunit A [Cucumis sativus][more]
gi|1009162796|ref|XP_015899626.1|2.1e-21189.67PREDICTED: DNA topoisomerase 6 subunit A [Ziziphus jujuba][more]
gi|225439757|ref|XP_002274790.1|1.3e-20586.67PREDICTED: DNA topoisomerase 6 subunit A [Vitis vinifera][more]
gi|297741485|emb|CBI32617.3|1.3e-20586.67unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002815Spo11/TopoVI_A
IPR004085TopoVI_A
IPR011991Winged helix-turn-helix DNA-binding domain
IPR013049Spo11/TopoVI_A_N
Vocabulary: Biological Process
TermDefinition
GO:0000737DNA catabolic process, endonucleolytic
GO:0006265DNA topological change
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003918DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0003824catalytic activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000737 DNA catabolic process, endonucleolytic
biological_process GO:0006259 DNA metabolic process
biological_process GO:0009957 epidermal cell fate specification
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0000706 meiotic DNA double-strand break processing
biological_process GO:0006265 DNA topological change
biological_process GO:0042138 meiotic DNA double-strand break formation
cellular_component GO:0005694 chromosome
cellular_component GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing)
cellular_component GO:0005634 nucleus
cellular_component GO:0000228 nuclear chromosome
molecular_function GO:0042802 identical protein binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G004680.1CmaCh03G004680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002815Spo11/DNA topoisomerase VI subunit APRINTSPR01550TOP6AFAMILYcoord: 269..290
score: 6.1E-42coord: 158..169
score: 6.1E-42coord: 172..189
score: 6.1E-42coord: 301..317
score: 6.1E-42coord: 190..205
score: 6.1E-42coord: 245..262
score: 6.1
IPR002815Spo11/DNA topoisomerase VI subunit APANTHERPTHR10848MEIOTIC RECOMBINATION PROTEIN SPO11coord: 7..420
score: 7.5E
IPR002815Spo11/DNA topoisomerase VI subunit AunknownSSF56726DNA topoisomerase IV, alpha subunitcoord: 134..420
score: 2.09
IPR004085DNA topoisomerase VI, subunit APRINTSPR01552TPISMRASE6Acoord: 391..414
score: 4.1E-24coord: 166..183
score: 4.1E-24coord: 275..295
score: 4.1E-24coord: 100..120
score: 4.1E-24coord: 219..237
score: 4.1
IPR004085DNA topoisomerase VI, subunit AHAMAPMF_00132Top6Acoord: 68..420
score: 36
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 60..197
score: 4.0
IPR013049Spo11/DNA topoisomerase VI, subunit A, N-terminalPFAMPF04406TP6A_Ncoord: 134..195
score: 7.5
NoneNo IPR availableGENE3DG3DSA:3.40.1360.10coord: 199..420
score: 2.0
NoneNo IPR availablePANTHERPTHR10848:SF0MEIOTIC RECOMBINATION PROTEIN SPO11coord: 7..420
score: 7.5E