CmaCh03G004580 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G004580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal protein S24e family protein, putative
Location	Cma_Chr03 : 4697309 .. 4699978 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGAACGGTGAACAACATCCACCGCCCCGACACCTCAGTGAACGCGCCATAAACTCCGATTTTCTCTCCTTTTCTCTGCGAAAAAATGACGAACCTCAATCTGCTCCGTAAGGCGCTTGGATCGCACTTCATTTCTCATTCAGCAACGCCAAATCATGGCCTTCCTGTGTTTTTCCGCCAATCTTCAAGATTCTTCTCGATGGAAGGGGAACAATCACCTCCTGAATCGTCCGCCAATTCTTTTCTTGATACATTGGAAACAGCAGGTATGAAGCTCGTTCCTACGTCTTCGTCGAGTCTGGACGATGTTCTCGTGTCGTGTGTTATGTTGGGAGAGGTTTAGGGTTTATAGATTGTGGCTGGTTTGAATTTTGGGAACAATTTTCTTTCTCGTTTATTTGAGCTTCTGGTAAATAAGTTTGGCTGATTGTACTAATCGATTCAGGTTTTTTTGATTCTGTAAGTTTTGAGTAATTTGGAATGCATTAATCGCTACGAAAGCCTTTTGGTGTCCTTACTGCTATACTGTTATCATTTAGGTAGCTGATTTTTTGTCTGATTCTACGTAGTGCAATGCCTAATGAGTTTTTTGTTACACTCTTATCAGGTTTGGTGTATGGAAAATTGTATGGTATCACAAGGAATGTTCTCAAGACAGACATTGTCAATTTGCTTGAAGGATGTAATTTGAGTTTGGATGATGTCAAAGTTGAATACAACCGGAGTTTCACGCCAACCTCTATGTAATGTTCTTCTTTTGCATATTTTGAATATAGATGCTTTCTGTAGCTTTCTGTATTAGGTTTTACCATCGTAGTTATGGTTCTATTCCTACTGCATCTTGGAAACTAAAATAATCAAAGAATATCTAATTGCCCTTTTGATCCTTAAAGCATTAATACAAATGCAGTCCTTAGGCCTGGATTATTAGCTACATGTTAATCTATGGAATATGCGTTCAATTAAGCGCGTTGTACCTTTTCTGTAAAAGGGTTATATTTCTAAGGAGAAACCCAATTGTGTAATGTTTATGGATGTTGAGTAACACTGGTGTTCGAGGTTGGTTTTCATTAAATATTTATGGATGTTGTAATCAGGATGATGCAATTCCCCTCCCGGAAGTCCTATGATAATGCTTTTCGAGTGATTGGAAGAAGAGGTCGCATATACAGATTGGAGCGGGTGATGTTCTGATGGATATCTAATAAAAAATGGATTTATTTTTTGTCTTGTTTTAAAATTTAGAAACATATTAACTTCTATTCTAAATTTCAGGCTGATCGTTCGCAGTGGGACCTTCTTTCACCTTACAATGGAAAAACTGTAATGCCATTTTTTAAAAATTATGAACTTATTGTCCATTGAGAAATCTCTTTACCATTCATATTCTTGTTTTTGTTATTGGCATCTTTGATCAGAAAGCAATCCATTCTACTTTATCTTTGTTTATCTAATATCATATGCTCGAATGGCATGGTTTCGAGGATCAAGCATACATATCAATATGTTCTCTGCTATTCTACTGCATGATGGTTAATTTCAATGGATTGTTCCTTACATCTCCAAAACTGATTATAGAGAAACTACTTTTTCATGTTAAACTGTTTAGAAGGGAGTAAGAAAAATGTTAGCCAAGGTCCTCGGTCTGGATCCCCCTTTAGTAGCTTCTCGAGGATATAAAACTGTTGTAACGACTTCAACTTAGAAGATTAAGGGTTTTTTTTTTCGTAAGATCGTTTATAATGAAAAAATAACATGATGATGTGATTAGATTTTCAATTGAAACTTGATATTTCAAGATTAAGAATTGGCTACCTTTCTGGTCGCAAGTTTGTTGTTCGTAAAATCATGTGCAACTTATTGTGCAGACTGCAGTTAATGGGTGTCTCATATTAAATTTAAGCCTCTCAACTCTGGATTGGTTCGGACTTTTTTCCTGTGGGATTAAATTTTCTTTGTACATACAGGTTCTTCTGCAAGGAATACCTCGAAATGCAGCGCTAGATGACGTGGAGCGCTTCTTATCTGGCTGTGACTATGATGCAACCTTAATCAATATGTTTTTCAGGTAGAGATCAATTATTTGTACCAAAGTTTCATACATCAATGAAAAAAAGTAATAATAGTTTAAAAAAAAGAAAAGTTCAGAATTAGTATTGTAGTACTTGTAGGAATTCTGTGTGATGCATCATTTATACATCATTGCAGGGCATCCATTCCAGAGCCCATCAGAATGGCGACAGTGCTGTTCCCTTCACCAACACAAGCAATGCATGCATTTCTTACTAAGAACAGAGGCTTTTGTCTGAACAACCAAATTTTGATGCGGGTTCTCCAATAACTAGTTACTGTTGTCATCTATATTCTACACATTTTTGGTTGGCTCGGTGTCTGGGCGTTCTGAAGTAGTCGTATGAGTTACGACTTGCATCTTCATATCTCAAGCCTCAAGTTATCTGAGTCACATGCATCATTCAAAGTGACCTGAATTCATTTGTAAGGAAGGATATCTGGATTACATAAAAATAAGGTTGTCGAATTATCGTGAAACTAGGCAGTTTTTGTTGTGTGACTGCTAGCCAACCCTTTTCACTATGGCCTTCATAGATTGCCGAACTTTTAATTATGTATCTAACAAATTAAATCTTTAAACATTAATTAATTTTCAT

mRNA sequence

TTGGAACGGTGAACAACATCCACCGCCCCGACACCTCAGTGAACGCGCCATAAACTCCGATTTTCTCTCCTTTTCTCTGCGAAAAAATGACGAACCTCAATCTGCTCCGTAAGGCGCTTGGATCGCACTTCATTTCTCATTCAGCAACGCCAAATCATGGCCTTCCTGTGTTTTTCCGCCAATCTTCAAGATTCTTCTCGATGGAAGGGGAACAATCACCTCCTGAATCGTCCGCCAATTCTTTTCTTGATACATTGGAAACAGCAGGTTTGGTGTATGGAAAATTGTATGGTATCACAAGGAATGTTCTCAAGACAGACATTGTCAATTTGCTTGAAGGATGTAATTTGAGTTTGGATGATGTCAAAGTTGAATACAACCGGAGTTTCACGCCAACCTCTATGATGATGCAATTCCCCTCCCGGAAGTCCTATGATAATGCTTTTCGAGTGATTGGAAGAAGAGGTCGCATATACAGATTGGAGCGGGCTGATCGTTCGCAGTGGGACCTTCTTTCACCTTACAATGGAAAAACTGTTCTTCTGCAAGGAATACCTCGAAATGCAGCGCTAGATGACGTGGAGCGCTTCTTATCTGGCTGTGACTATGATGCAACCTTAATCAATATGTTTTTCAGGGCATCCATTCCAGAGCCCATCAGAATGGCGACAGTGCTGTTCCCTTCACCAACACAAGCAATGCATGCATTTCTTACTAAGAACAGAGGCTTTTGTCTGAACAACCAAATTTTGATGCGGGTTCTCCAATAACTAGTTACTGTTGTCATCTATATTCTACACATTTTTGGTTGGCTCGGTGTCTGGGCGTTCTGAAGTAGTCGTATGAGTTACGACTTGCATCTTCATATCTCAAGCCTCAAGTTATCTGAGTCACATGCATCATTCAAAGTGACCTGAATTCATTTGTAAGGAAGGATATCTGGATTACATAAAAATAAGGTTGTCGAATTATCGTGAAACTAGGCAGTTTTTGTTGTGTGACTGCTAGCCAACCCTTTTCACTATGGCCTTCATAGATTGCCGAACTTTTAATTATGTATCTAACAAATTAAATCTTTAAACATTAATTAATTTTCAT

Coding sequence (CDS)

ATGACGAACCTCAATCTGCTCCGTAAGGCGCTTGGATCGCACTTCATTTCTCATTCAGCAACGCCAAATCATGGCCTTCCTGTGTTTTTCCGCCAATCTTCAAGATTCTTCTCGATGGAAGGGGAACAATCACCTCCTGAATCGTCCGCCAATTCTTTTCTTGATACATTGGAAACAGCAGGTTTGGTGTATGGAAAATTGTATGGTATCACAAGGAATGTTCTCAAGACAGACATTGTCAATTTGCTTGAAGGATGTAATTTGAGTTTGGATGATGTCAAAGTTGAATACAACCGGAGTTTCACGCCAACCTCTATGATGATGCAATTCCCCTCCCGGAAGTCCTATGATAATGCTTTTCGAGTGATTGGAAGAAGAGGTCGCATATACAGATTGGAGCGGGCTGATCGTTCGCAGTGGGACCTTCTTTCACCTTACAATGGAAAAACTGTTCTTCTGCAAGGAATACCTCGAAATGCAGCGCTAGATGACGTGGAGCGCTTCTTATCTGGCTGTGACTATGATGCAACCTTAATCAATATGTTTTTCAGGGCATCCATTCCAGAGCCCATCAGAATGGCGACAGTGCTGTTCCCTTCACCAACACAAGCAATGCATGCATTTCTTACTAAGAACAGAGGCTTTTGTCTGAACAACCAAATTTTGATGCGGGTTCTCCAATAA

Protein sequence

MTNLNLLRKALGSHFISHSATPNHGLPVFFRQSSRFFSMEGEQSPPESSANSFLDTLETAGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKSYDNAFRVIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYDATLINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

Homology

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BLAST of CmaCh03G004580 vs. TrEMBL
Match: A0A0A0L225_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293110 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 4.9e-84
Identity = 156/227 (68.72%), Postives = 187/227 (82.38%), Query Frame = 1


Query: 1   MTNLNLLRKALGSHFISHSATPNHGLPVFFRQSSRFFSMEGEQSPPESSANSFLDTLETA 60
           M+NL+LLRKALGS+FIS SAT NH LP+FFRQS RFFS E EQ+PPESS N F D   T 
Sbjct: 1   MSNLSLLRKALGSNFISRSATANHELPLFFRQSPRFFSTEQEQAPPESSPNRFSDKTNTD 60

Query: 61  GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKSYDNAF 120
           GL +GKL G +R++LK+D++ LL+GCNLS +DVK EY R+F PTS+M+QFPS ++Y NAF
Sbjct: 61  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAF 120

Query: 121 RVIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYDATLIN 180
           + I R+G + R+ERADRSQW+LLSPYNGKTVLL+GIPRNA ++D+ERFLSGCDYDA+ IN
Sbjct: 121 QAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNALVEDLERFLSGCDYDASSIN 180

Query: 181 MFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 228
            F+R S   P + ATV F SP QAMHAFLTKNRGFCLNNQI MRVLQ
Sbjct: 181 -FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ 226

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BLAST of CmaCh03G004580 vs. TrEMBL
Match: V4S491_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012666mg PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.4e-69
Identity = 132/228 (57.89%), Postives = 170/228 (74.56%), Query Frame = 1


Query: 4   LNLLRKALGSHFISHSATPNHGLPVFFRQSSRFFSMEGEQSPP----ESSANSFLDTLET 63
           ++LLR A+ S     +  P H LP   RQS + FS E E  PP    ++S + FL T  T
Sbjct: 1   MSLLRNAIKSSVSLRTIKPIHSLPSLLRQSPKHFSTETEAPPPPPPNDASIDLFLQT-PT 60

Query: 64  AGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKSYDNA 123
            G+ YGKL GI+R  LK+DI+NLLEGCNL+ DD+KV Y R++ P +MMMQFPS  +YDNA
Sbjct: 61  KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNA 120

Query: 124 FRVIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYDATLI 183
           FR+IGR+GR+YRLERA++S+WD++ PYNGKTVLLQ +PR A  +DVERFLSGC+Y+A+ I
Sbjct: 121 FRLIGRKGRLYRLERAEQSEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSI 180

Query: 184 NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 228
           +   R S+P+ I+ ATV FPS TQAM AF+ KNRGFCLNNQ+ +RVLQ
Sbjct: 181 SFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRVLQ 227

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BLAST of CmaCh03G004580 vs. TrEMBL
Match: A0A059A7F6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03186 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 6.0e-66
Identity = 136/232 (58.62%), Postives = 168/232 (72.41%), Query Frame = 1


Query: 4   LNLLRKALGSHFISHS------ATPNHGLPVFFRQSSRFFSMEGEQ--SPPESSANSFLD 63
           +N L+ A+ S F   S      A    GLP   R + R FS E EQ   P +SSA+ FL 
Sbjct: 1   MNQLQSAIRSTFALRSRGGTAAAAAARGLPSLLRDAPRPFSTEPEQPAQPEDSSADPFLR 60

Query: 64  TLETAGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKS 123
              T G VY KL+G++R+ LKTDIVNLLEGCNL+ DDV+  YNR F P  MM+QFPSR  
Sbjct: 61  PPNT-GPVYAKLFGMSRHTLKTDIVNLLEGCNLTPDDVRFNYNRMFVPMGMMVQFPSRFQ 120

Query: 124 YDNAFRVIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYD 183
           +D AF+VIGR+GR+Y+LERADRSQWDLL  Y+GKT+LLQGIP +A  +DVERF+SGC YD
Sbjct: 121 FDQAFKVIGRKGRLYKLERADRSQWDLLMNYDGKTLLLQGIPFSANPNDVERFMSGCQYD 180

Query: 184 ATLINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 228
           A+ I M  R + P+PI+MATV FPS  QAM+AF+TKNRGFC N+Q+L+RVLQ
Sbjct: 181 ASSIQMMVRPANPDPIKMATVNFPSQIQAMNAFITKNRGFCQNSQVLLRVLQ 231

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BLAST of CmaCh03G004580 vs. TrEMBL
Match: D7TQC4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g02910 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.5e-64
Identity = 125/208 (60.10%), Postives = 165/208 (79.33%), Query Frame = 1


Query: 19  SATPNHGLPVFFRQSSRFFSMEGEQSPPESSANSFLDTLETAGLVYGKLYGITRNVLKTD 78
           +A P+ GLP+  R     FS E E +P  SS++ FL    T GLVYG+L GIT++ L+TD
Sbjct: 16  TAKPSQGLPLLIRS----FSTEAE-APQVSSSDPFLQPPST-GLVYGRLSGITKHTLRTD 75

Query: 79  IVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKSYDNAFRVIGRRGRIYRLERADRS 138
           I+NLLEGCNL+L DVKV+YNRS+ P  MM+QFPSR ++D+A +VI ++GR+Y+L+RADRS
Sbjct: 76  ILNLLEGCNLTLQDVKVDYNRSYFPVGMMVQFPSRYAFDHAIKVINKKGRLYKLDRADRS 135

Query: 139 QWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYDATLINMFFRASIPEPIRMATVLF 198
           QWD L  Y+GKTVLLQG+PRNA  +DVERFL+GC+++++ I +  R + P+PIRMA V F
Sbjct: 136 QWDPLRTYDGKTVLLQGLPRNALPEDVERFLAGCEFNSSNIQLTTRQAFPDPIRMALVHF 195

Query: 199 PSPTQAMHAFLTKNRGFCLNNQILMRVL 227
           PS +QAM+AF+TKNRGFCLNNQIL+RVL
Sbjct: 196 PSQSQAMNAFITKNRGFCLNNQILVRVL 217

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BLAST of CmaCh03G004580 vs. TrEMBL
Match: A0A067JYS2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16431 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.1e-62
Identity = 117/226 (51.77%), Postives = 164/226 (72.57%), Query Frame = 1


Query: 4   LNLLRKALGSHFISHSATPNHGLPVFFRQSSRFFSMEGEQSP--PESSANSFLDTLETAG 63
           ++L+R ++ S+F   +  PNH +    R SS+  S E EQ P   +SS + FL T   AG
Sbjct: 1   MSLVRNSIRSNFNVSAFKPNHAISFCLRHSSKHLSTEAEQPPLPQDSSEHPFLRTTG-AG 60

Query: 64  LVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKSYDNAFR 123
            VY KL+GIT+N LKTDI+N+L+G NL+ DD+KV YNR F P  MM+QFPS  ++DNA++
Sbjct: 61  TVYAKLFGITKNTLKTDIINMLDGSNLTPDDIKVSYNRDFMPVGMMLQFPSYSAFDNAYK 120

Query: 124 VIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYDATLINM 183
            + ++GR Y+L+R+DRSQWD+L PY+GKT+LLQG+PRN   +DVERFLS C+YD + + +
Sbjct: 121 AMRKKGRFYKLDRSDRSQWDILMPYDGKTLLLQGLPRNVVPEDVERFLSDCEYDPSSLQL 180

Query: 184 FFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 228
           F R   PEP ++A + F + T+AM+A +TKNR FCLN+QI +RVLQ
Sbjct: 181 FPRQGFPEPTKIALIRFYTRTEAMNALITKNRAFCLNSQISVRVLQ 225

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BLAST of CmaCh03G004580 vs. TAIR10
Match: AT5G02740.1 (AT5G02740.1 Ribosomal protein S24e family protein)

HSP 1 Score: 174.9 bits (442), Expect = 5.8e-44
Identity = 95/214 (44.39%), Postives = 129/214 (60.28%), Query Frame = 1


Query: 16  ISHSATPNHGLPVFFRQSSRFFSMEGEQSPPESSANSFLDTLETAGLVYGKLYGITRNVL 75
           IS S+ P      F ++  +  S   EQ PP S            G  YGK  G +++ L
Sbjct: 21  ISRSSLP------FLQEWRKCLSTATEQPPPASPLPPPPGGSPGEGRFYGKFSGFSKHAL 80

Query: 76  KTDIVNLLEGCNLSLDDVKVEYNR--SFTPTSMMMQFPSRKSYDNAFRVIGRRGRIYRLE 135
           KTDI+N+LEGC+L+ DD+K  Y R  + TP ++ +QFPS  +YD A R I ++G++YRLE
Sbjct: 81  KTDIMNVLEGCSLTSDDLKFNYPRGGNLTPAAVFVQFPSLSAYDKALRNIAKKGKLYRLE 140

Query: 136 RADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYDATLINMFFRASIPEPIRM 195
           +A R+QWD + PY GK V L GIP NA  DD++RFLSGC Y    I       +    R+
Sbjct: 141 KAARAQWDPIVPYEGKVVALHGIPVNAITDDIDRFLSGCLYYPGSIQFLTVQGLGTSKRV 200

Query: 196 ATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 228
           A V F S TQAM+A++TKNR F LN +I ++VLQ
Sbjct: 201 ALVRFTSQTQAMNAYITKNRNFLLNQRITLQVLQ 228

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BLAST of CmaCh03G004580 vs. NCBI nr
Match: gi|659068925|ref|XP_008447318.1| (PREDICTED: uncharacterized protein LOC103489786 [Cucumis melo])

HSP 1 Score: 325.9 bits (834), Expect = 5.7e-86
Identity = 159/227 (70.04%), Postives = 188/227 (82.82%), Query Frame = 1


Query: 1   MTNLNLLRKALGSHFISHSATPNHGLPVFFRQSSRFFSMEGEQSPPESSANSFLDTLETA 60
           M+NL LLRKALGS+FIS  AT NH LP+FFRQS RFFS E EQ PPESS N F D   T 
Sbjct: 1   MSNLGLLRKALGSNFISRPATSNHELPLFFRQSPRFFSTEREQPPPESSPNRFSDKSNTD 60

Query: 61  GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKSYDNAF 120
           G +YGKL+G +R+ LKTD++ LLEGCNLSLDD+K EY+R+F P SMM+QFPS+++Y +AF
Sbjct: 61  GFMYGKLFGFSRSTLKTDVLILLEGCNLSLDDIKFEYSRNFFPVSMMIQFPSQQAYQHAF 120

Query: 121 RVIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYDATLIN 180
           + I R+G ++RLERADRSQW+LLSPYNGKTV LQGIPRNA ++DVERFLSGCDYDA+ IN
Sbjct: 121 QAIARKGFLHRLERADRSQWELLSPYNGKTVFLQGIPRNALVEDVERFLSGCDYDASSIN 180

Query: 181 MFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 228
           + +R S  EP +MATV F SP QAMHAFLTKNRGFCLNNQI M+VLQ
Sbjct: 181 I-YRGSFSEPTKMATVQFLSPIQAMHAFLTKNRGFCLNNQISMQVLQ 226

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BLAST of CmaCh03G004580 vs. NCBI nr
Match: gi|449448687|ref|XP_004142097.1| (PREDICTED: uncharacterized protein LOC101220680 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 7.0e-84
Identity = 156/227 (68.72%), Postives = 187/227 (82.38%), Query Frame = 1


Query: 1   MTNLNLLRKALGSHFISHSATPNHGLPVFFRQSSRFFSMEGEQSPPESSANSFLDTLETA 60
           M+NL+LLRKALGS+FIS SAT NH LP+FFRQS RFFS E EQ+PPESS N F D   T 
Sbjct: 1   MSNLSLLRKALGSNFISRSATANHELPLFFRQSPRFFSTEQEQAPPESSPNRFSDKTNTD 60

Query: 61  GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKSYDNAF 120
           GL +GKL G +R++LK+D++ LL+GCNLS +DVK EY R+F PTS+M+QFPS ++Y NAF
Sbjct: 61  GLRFGKLVGASRSMLKSDVLILLQGCNLSFEDVKFEYVRNFVPTSIMIQFPSEQAYQNAF 120

Query: 121 RVIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYDATLIN 180
           + I R+G + R+ERADRSQW+LLSPYNGKTVLL+GIPRNA ++D+ERFLSGCDYDA+ IN
Sbjct: 121 QAIARKGYLQRMERADRSQWELLSPYNGKTVLLEGIPRNALVEDLERFLSGCDYDASSIN 180

Query: 181 MFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 228
            F+R S   P + ATV F SP QAMHAFLTKNRGFCLNNQI MRVLQ
Sbjct: 181 -FYRGSFSAPTKTATVQFRSPIQAMHAFLTKNRGFCLNNQISMRVLQ 226

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BLAST of CmaCh03G004580 vs. NCBI nr
Match: gi|1009165193|ref|XP_015900911.1| (PREDICTED: uncharacterized protein LOC107434017 [Ziziphus jujuba])

HSP 1 Score: 293.5 bits (750), Expect = 3.2e-76
Identity = 148/231 (64.07%), Postives = 181/231 (78.35%), Query Frame = 1


Query: 1   MTNLNLLRKALGSH--FISHSATPNHGLPVFFRQSSRFFSMEGEQSPPESSA--NSFLDT 60
           M  L+LLR  + S+  F +  A  N    +  R+S RF S E E  PP+     NSFL+T
Sbjct: 1   MPKLSLLRTVIRSNPSFFTVRADKNGLSSLLLRESPRFISTEAENQPPKDPPVENSFLET 60

Query: 61  LETAGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKSY 120
               GLVYGKLYGITRN LKTDIVNLLEGCNL+L+DVKV+Y+RSFTP  MM+QFPSR++Y
Sbjct: 61  -PGTGLVYGKLYGITRNTLKTDIVNLLEGCNLTLEDVKVDYSRSFTPLGMMVQFPSRQAY 120

Query: 121 DNAFRVIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYDA 180
           + A RVI RRGR+ RLERADRSQWD+L+PY+GKTVLLQGIPRNA  +DVERFLSGC YDA
Sbjct: 121 EQAARVISRRGRLNRLERADRSQWDILTPYDGKTVLLQGIPRNAVPEDVERFLSGCQYDA 180

Query: 181 TLINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 228
           + I +F RA+ P+PI+MAT+ FPSPT+AM+AF+TKNR FCLN+Q+ +RVLQ
Sbjct: 181 SSIQIFLRAAYPDPIKMATIRFPSPTEAMNAFITKNRAFCLNSQVTVRVLQ 230

[Close]

BLAST of CmaCh03G004580 vs. NCBI nr
Match: gi|567872737|ref|XP_006428958.1| (hypothetical protein CICLE_v10012666mg [Citrus clementina])

HSP 1 Score: 269.2 bits (687), Expect = 6.4e-69
Identity = 132/228 (57.89%), Postives = 170/228 (74.56%), Query Frame = 1


Query: 4   LNLLRKALGSHFISHSATPNHGLPVFFRQSSRFFSMEGEQSPP----ESSANSFLDTLET 63
           ++LLR A+ S     +  P H LP   RQS + FS E E  PP    ++S + FL T  T
Sbjct: 1   MSLLRNAIKSSVSLRTIKPIHSLPSLLRQSPKHFSTETEAPPPPPPNDASIDLFLQT-PT 60

Query: 64  AGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKSYDNA 123
            G+ YGKL GI+R  LK+DI+NLLEGCNL+ DD+KV Y R++ P +MMMQFPS  +YDNA
Sbjct: 61  KGVFYGKLLGISRQTLKSDIINLLEGCNLTPDDLKVNYTRNYMPFAMMMQFPSFSAYDNA 120

Query: 124 FRVIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERFLSGCDYDATLI 183
           FR+IGR+GR+YRLERA++S+WD++ PYNGKTVLLQ +PR A  +DVERFLSGC+Y+A+ I
Sbjct: 121 FRLIGRKGRLYRLERAEQSEWDIVMPYNGKTVLLQNVPRIAVAEDVERFLSGCEYEASSI 180

Query: 184 NMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 228
           +   R S+P+ I+ ATV FPS TQAM AF+ KNRGFCLNNQ+ +RVLQ
Sbjct: 181 SFMLRQSLPDSIKWATVRFPSQTQAMDAFIRKNRGFCLNNQVSVRVLQ 227

[Close]

BLAST of CmaCh03G004580 vs. NCBI nr
Match: gi|658020114|ref|XP_008345432.1| (PREDICTED: uncharacterized protein LOC103408360 [Malus domestica])

HSP 1 Score: 261.5 bits (667), Expect = 1.3e-66
Identity = 138/239 (57.74%), Postives = 177/239 (74.06%), Query Frame = 1


Query: 1   MTNLNLLRKALGSHFISHSATP-NHGLPVFFRQSSRFFSMEGEQSPPESSANS------- 60
           M+ L LLR A+ S     +A P N GLP+   + +R FS E E +PP++S  S       
Sbjct: 1   MSKLGLLRAAITSSIAVRTAVPQNRGLPMLLGEPARRFSTEAE-NPPQNSRPSDQPQDAS 60

Query: 61  ----FLDTLETAGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMM 120
               FL T  T GLVYGKL GI+R  LKTD+VN+LEGCNLSL+DVKV+YNR+FTP  M++
Sbjct: 61  PIEPFLQT-PTTGLVYGKLLGISRYTLKTDVVNMLEGCNLSLEDVKVDYNRAFTPMGMVV 120

Query: 121 QFPSRKSYDNAFRVIGRRGRIYRLERADRSQWDLLSPYNGKTVLLQGIPRNAALDDVERF 180
           QF S K++DNA RVI R+GR+++LERA+RSQWD L+P++ KTVLLQGIP+ AA +DVERF
Sbjct: 121 QFRSWKAFDNAARVISRKGRLFKLERANRSQWDNLTPHDAKTVLLQGIPQTAAPEDVERF 180

Query: 181 LSGCDYDATLINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ 228
           LSGC+YD++ + + FR S PEP + ATV FPS T+AM+AFL KN+G+C N QILMRVLQ
Sbjct: 181 LSGCEYDSSSLQIIFR-SFPEPSKFATVRFPSQTEAMNAFLAKNKGYCQNGQILMRVLQ 236

The following BLAST results are available for this feature:

BLAST of CmaCh03G004580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G004580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L225_CUCSA	4.9e-84	68.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G293110 PE=4 SV=1	[more]
V4S491_9ROSI	4.4e-69	57.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012666mg PE=4 SV=1	[more]
A0A059A7F6_EUCGR	6.0e-66	58.62	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03186 PE=4 SV=1	[more]
D7TQC4_VITVI	2.5e-64	60.10	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g02910 PE=4 SV=...	[more]
A0A067JYS2_JATCU	3.1e-62	51.77	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16431 PE=4 SV=1	[more]

BLAST of CmaCh03G004580 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02740.1	5.8e-44	44.39	Ribosomal protein S24e family protein	[more]

BLAST of CmaCh03G004580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068925\|ref\|XP_008447318.1\|	5.7e-86	70.04	PREDICTED: uncharacterized protein LOC103489786 [Cucumis melo]	[more]
gi\|449448687\|ref\|XP_004142097.1\|	7.0e-84	68.72	PREDICTED: uncharacterized protein LOC101220680 [Cucumis sativus]	[more]
gi\|1009165193\|ref\|XP_015900911.1\|	3.2e-76	64.07	PREDICTED: uncharacterized protein LOC107434017 [Ziziphus jujuba]	[more]
gi\|567872737\|ref\|XP_006428958.1\|	6.4e-69	57.89	hypothetical protein CICLE_v10012666mg [Citrus clementina]	[more]
gi\|658020114\|ref\|XP_008345432.1\|	1.3e-66	57.74	PREDICTED: uncharacterized protein LOC103408360 [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G004580.1	CmaCh03G004580.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G004580	Cucsa.065760	Cucumber (Gy14) v1	cgycmaB0105
CmaCh03G004580	Cla018255	Watermelon (97103) v1	cmawmB633
CmaCh03G004580	Csa4G293110	Cucumber (Chinese Long) v2	cmacuB668
CmaCh03G004580	MELO3C003081	Melon (DHL92) v3.5.1	cmameB619
CmaCh03G004580	ClCG04G008670	Watermelon (Charleston Gray)	cmawcgB585
CmaCh03G004580	CSPI04G14130	Wild cucumber (PI 183967)	cmacpiB677
CmaCh03G004580	CmoCh07G009970	Cucurbita moschata (Rifu)	cmacmoB673
CmaCh03G004580	CmoCh03G004720	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G004580	Lsi01G013800	Bottle gourd (USVL1VR-Ls)	cmalsiB601
CmaCh03G004580	Cp4.1LG10g08990	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G004580	Cp4.1LG19g04260	Cucurbita pepo (Zucchini)	cmacpeB668
CmaCh03G004580	MELO3C003081.2	Melon (DHL92) v3.6.1	cmamedB705
CmaCh03G004580	CsaV3_4G024490	Cucumber (Chinese Long) v3	cmacucB0797
CmaCh03G004580	Cla97C04G075350	Watermelon (97103) v2	cmawmbB684
CmaCh03G004580	Bhi03G001266	Wax gourd	cmawgoB0794
CmaCh03G004580	CsGy4G013700	Cucumber (Gy14) v2	cgybcmaB533
CmaCh03G004580	Carg13778	Silver-seed gourd	carcmaB1276
CmaCh03G004580	Carg24338	Silver-seed gourd	carcmaB0657

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh03G004580	CmaCh07G009500	Cucurbita maxima (Rimu)	cmacmaB529

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G004580	Cucumber (Chinese Long) v3	cmacucB0785
CmaCh03G004580	Cucumber (Chinese Long) v3	cmacucB0805
CmaCh03G004580	Watermelon (97103) v2	cmawmbB675
CmaCh03G004580	Wax gourd	cmawgoB0776
CmaCh03G004580	Cucurbita maxima (Rimu)	cmacmaB268
CmaCh03G004580	Cucurbita maxima (Rimu)	cmacmaB514
CmaCh03G004580	Cucumber (Gy14) v1	cgycmaB0470
CmaCh03G004580	Cucurbita moschata (Rifu)	cmacmoB660
CmaCh03G004580	Wild cucumber (PI 183967)	cmacpiB665
CmaCh03G004580	Wild cucumber (PI 183967)	cmacpiB685
CmaCh03G004580	Cucumber (Chinese Long) v2	cmacuB657
CmaCh03G004580	Cucumber (Chinese Long) v2	cmacuB677
CmaCh03G004580	Melon (DHL92) v3.5.1	cmameB588
CmaCh03G004580	Melon (DHL92) v3.5.1	cmameB604
CmaCh03G004580	Watermelon (Charleston Gray)	cmawcgB574
CmaCh03G004580	Watermelon (97103) v1	cmawmB615
CmaCh03G004580	Cucurbita pepo (Zucchini)	cmacpeB665
CmaCh03G004580	Bottle gourd (USVL1VR-Ls)	cmalsiB612
CmaCh03G004580	Cucumber (Gy14) v2	cgybcmaB404
CmaCh03G004580	Cucumber (Gy14) v2	cgybcmaB645
CmaCh03G004580	Melon (DHL92) v3.6.1	cmamedB671
CmaCh03G004580	Silver-seed gourd	carcmaB0211