CmaCh03G001960 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G001960
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionBeta-galactosidase
LocationCma_Chr03 : 3014075 .. 3014586 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAATCTAGGATGGTACAAAGCTAGCTTTAAGACTCCTTTGGGAACTAACCCAGTAGCATTCGACATGCAAGGGATGGGAAAAGGTCAGGCTTGGGTAAATGGGCAAAGTGACAATTTTGGCCTTCTTTCATTACTAGAAATGATGATTGCAGTTCGACCTGTGACTATAGAGGTGCATATGACCCTAGTAATTGTGTTAAAAATTGTGGGAATCCCTCTCAAAGATGGTATCACGTTCTAAGATCGTTTCTGTCAGATGACACTAACACATTGATTTTATTTGAAGAAATTGGTGGAAGAACTCAACCAGTCGCAATTCAAACCATCACTATAGGAACTATGTGTGGAAATGGTAATGAATGAAGCATCTTAGAATTGTTTGGGAGAGAGGACGTATCATTTCTGAAATCCAATATGCTAACTATGAAAATCCCATTTAAGCAAGGTTCATGGGATGTGACAAATAACACTATTTTGGTGGAAAAGTGCTCGACTTTGCTCAAATGA

mRNA sequence

ATGAAAAATCTAGGATGGTACAAAGCTAGCTTTAAGACTCCTTTGGGAACTAACCCAGTAGCATTCGACATGCAAGGGATGGGAAAAGGTCAGGCTTGGGTAAATGGGCAAAGTGACAATTTTGGCCTTCTTTCATTACTAGAAATGATGATTGCAGTTCGACCTGTGACTATAGAGGTGCATATGACCCTAGTAATTGTGTTAAAAATTGTGGGAATCCCTCTCAAAGATGATGACACTAACACATTGATTTTATTTGAAGAAATTGGTGGAAGAACTCAACCAGTCGCAATTCAAACCATCACTATAGGAACTATGTGTGGAAATGAATTGTTTGGGAGAGAGGACGTATCATTTCTGAAATCCAATATGCTAACTATGAAAATCCCATTTAAGCAAGGTTCATGGGATGTGACAAATAACACTATTTTGGTGGAAAAGTGCTCGACTTTGCTCAAATGA

Coding sequence (CDS)

ATGAAAAATCTAGGATGGTACAAAGCTAGCTTTAAGACTCCTTTGGGAACTAACCCAGTAGCATTCGACATGCAAGGGATGGGAAAAGGTCAGGCTTGGGTAAATGGGCAAAGTGACAATTTTGGCCTTCTTTCATTACTAGAAATGATGATTGCAGTTCGACCTGTGACTATAGAGGTGCATATGACCCTAGTAATTGTGTTAAAAATTGTGGGAATCCCTCTCAAAGATGATGACACTAACACATTGATTTTATTTGAAGAAATTGGTGGAAGAACTCAACCAGTCGCAATTCAAACCATCACTATAGGAACTATGTGTGGAAATGAATTGTTTGGGAGAGAGGACGTATCATTTCTGAAATCCAATATGCTAACTATGAAAATCCCATTTAAGCAAGGTTCATGGGATGTGACAAATAACACTATTTTGGTGGAAAAGTGCTCGACTTTGCTCAAATGA

Protein sequence

MKNLGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQSDNFGLLSLLEMMIAVRPVTIEVHMTLVIVLKIVGIPLKDDDTNTLILFEEIGGRTQPVAIQTITIGTMCGNELFGREDVSFLKSNMLTMKIPFKQGSWDVTNNTILVEKCSTLLK
Homology
[Close]
BLAST of CmaCh03G001960 vs. Swiss-Prot
Match: BGAL7_ARATH (Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 41/124 (33.06%), Postives = 55/124 (44.35%), Query Frame = 1 

Query: 4   LGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQS-------------------DNFGLL 63
           L WYKA FK PLG  PV  D+ G+GKG+AW+NGQS                   D  G  
Sbjct: 622 LTWYKAKFKAPLGKEPVIVDLNGLGKGEAWINGQSIGRYWPSFNSSDDGCKDECDYRGAY 681

Query: 64  SLLEM-MIAVRPVTIEVHMTLVIVLKIVGIPLKDDDTNTLILFEEIGGRTQPVAIQTITI 108
              +   +  +P     H+            L     NT+ LFEE+GG    V  +T+ +
Sbjct: 682 GSDKCAFMCGKPTQRWYHVPRSF--------LNASGHNTITLFEEMGGNPSMVNFKTVVV 737

[Close]
BLAST of CmaCh03G001960 vs. Swiss-Prot
Match: BGAL_BRAOL (Beta-galactosidase OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-09
Identity = 39/124 (31.45%), Postives = 55/124 (44.35%), Query Frame = 1 

Query: 4   LGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQS----------DNFGLLSLLEM---- 63
           L WYKA+FK PLG +PV  D+ G+GKG+ W+NGQS           + G     +     
Sbjct: 624 LSWYKANFKAPLGKDPVIVDLNGLGKGEVWINGQSIGRYWPSFNSSDEGCTEECDYRGEY 683

Query: 64  ------MIAVRPVTIEVHMTLVIVLKIVGIPLKDDDTNTLILFEEIGGRTQPVAIQTITI 108
                  +  +P     H+            L D   NT+ LFEE+GG    V  +T+  
Sbjct: 684 GSDKCAFMCGKPTQRWYHVPRSF--------LNDKGHNTITLFEEMGGDPSMVKFKTVVT 739

[Close]
BLAST of CmaCh03G001960 vs. Swiss-Prot
Match: BGA15_ARATH (Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 36/101 (35.64%), Postives = 53/101 (52.48%), Query Frame = 1 

Query: 9   ASFKTPLGTNPVAFDMQGMGKGQAWVNGQSDNFGLLSLLEMMIAVRPVTIEVHMTLVIVL 68
           +++  PLG+ PV  D+ G+GKG AW+NG  +N G       +  +   + E H+      
Sbjct: 604 STWSAPLGSEPVVVDLLGLGKGTAWING--NNIGRY-WPAFLSDIDGCSAEYHVPRSF-- 663

Query: 69  KIVGIPLKDDDTNTLILFEEIGGRTQPVAIQTITIGTMCGN 110
                 L  +  NTL+LFEEIGG    V  QTI +G++C N
Sbjct: 664 ------LNSEGDNTLVLFEEIGGNPSLVNFQTIGVGSVCAN 693

[Close]
BLAST of CmaCh03G001960 vs. Swiss-Prot
Match: BGA16_ARATH (Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-08
Identity = 39/106 (36.79%), Postives = 53/106 (50.00%), Query Frame = 1 

Query: 4   LGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQSDNFGLLSLLEMMIAVRPVTIEVHMT 63
           L WYKASF TP G +PVA ++  MGKG+AWVNGQS   G   +        P  I  H+ 
Sbjct: 608 LTWYKASFDTPEGEDPVALNLGSMGKGEAWVNGQS--IGRYWVSFHTYKGNPSQIWYHIP 667

Query: 64  LVIVLKIVGIPLKDDDTNTLILFEEIGGRTQPVAIQTITIGTMCGN 110
                      LK +    +IL EE  G    + I T+++  +CG+
Sbjct: 668 RSF--------LKPNSNLLVILEEEREGNPLGITIDTVSVTEVCGH 703

[Close]
BLAST of CmaCh03G001960 vs. Swiss-Prot
Match: BGAL9_ARATH (Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.4e-08
Identity = 37/122 (30.33%), Postives = 54/122 (44.26%), Query Frame = 1 

Query: 6   WYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQ---------SDNFGLLSLLEMMIAV--- 65
           WYK  F  P GT+PV  +++ MG+GQAWVNGQ         S   G     +   A    
Sbjct: 653 WYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHIGRYWNIISQKDGCDRTCDYRGAYNSD 712

Query: 66  -------RPVTIEVHMTLVIVLKIVGIPLKDDDTNTLILFEEIGGRTQPVAIQTITIGTM 109
                  +P     H+    +            +N L+LFEE GG    ++++T+T G +
Sbjct: 713 KCTTNCGKPTQTRYHVPRSWL---------KPSSNLLVLFEETGGNPFKISVKTVTAGIL 765

[Close]
BLAST of CmaCh03G001960 vs. TrEMBL
Match: A0A0A0LXX7_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_1G643050 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-20
Identity = 71/174 (40.80%), Postives = 90/174 (51.72%), Query Frame = 1 

Query: 2   KNLGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQSDNFGLLSLLEMMIAVRPVTIEV- 61
           + + WYK SFKTP G +PV  DMQGMGKG+AW+NGQS    +       IA      E  
Sbjct: 596 RRMTWYKTSFKTPSGIDPVTLDMQGMGKGEAWINGQS----IGRFWPSFIAGNDNCSETC 655

Query: 62  -HMTLVIVLKIVG-----------IPLK--DDDTNTLILFEEIGGRTQPVAIQTITIGTM 121
            +       K VG           IP     ++TNTL+LFEEIGG  Q V++QTITIGT+
Sbjct: 656 DYRGAYDPSKCVGNCGNPSQRWYHIPRSFLSNNTNTLVLFEEIGGSPQQVSVQTITIGTI 715

Query: 122 CGNELFGREDVSFLKSNMLTMKI-------------PFKQGSWDVTNNTILVEK 148
           CGN   G       +   +  +I              FKQGSWDVTN+ +L+EK
Sbjct: 716 CGNANEGSTLELSCQGEYIISEIQFASYGNPKGKCGSFKQGSWDVTNSALLLEK 765

[Close]
BLAST of CmaCh03G001960 vs. TrEMBL
Match: A0A0A0M006_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_1G650110 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.4e-20
Identity = 71/171 (41.52%), Postives = 87/171 (50.88%), Query Frame = 1 

Query: 2   KNLGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQS----------DNFGLLSLLEMMI 61
           + + WYK SFKTP G +PV  DMQGMGKGQAWVNGQS           N    +  +   
Sbjct: 614 RRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQSIGRFWPSFIAGNDSCSATCDYRG 673

Query: 62  AVRPVTIEVHMTLVIVLKIVGIPLK--DDDTNTLILFEEIGGRTQPVAIQTITIGTMCGN 121
           A  P    V        +   +P      DTNTLILFEEIGG  Q V++QTITIGT+CGN
Sbjct: 674 AYNPSKC-VENCGNPSQRWYHVPRSFLSSDTNTLILFEEIGGNPQQVSVQTITIGTICGN 733

Query: 122 ELFGR------------EDVSFLKSNMLTMKI-PFKQGSWDVTNNTILVEK 148
              G              ++ F        K   FK+GSWDVTN  +++EK
Sbjct: 734 ANEGSTLELSCQGGHVISEIQFASYGNPGGKCGSFKKGSWDVTNIALILEK 783

[Close]
BLAST of CmaCh03G001960 vs. TrEMBL
Match: A0A0A0LDH9_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_3G550690 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 70/178 (39.33%), Postives = 89/178 (50.00%), Query Frame = 1 

Query: 2   KNLGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQS----------DNFGLLSLLEMMI 61
           + + W+KA+FKTP GT+PV  DMQGMGKGQAWVNG+S           N       +   
Sbjct: 601 RRMTWFKATFKTPSGTDPVVLDMQGMGKGQAWVNGRSIGRFWPSFIASNDSCSETCDYKG 660

Query: 62  AVRPVTIEVHMTLVIVLKIVGIP--LKDDDTNTLILFEEIGGRTQPVAIQTITIGTMCGN 121
           +  P    V        +   IP    +D  NTLILFEEIGG  Q V++QTITIGT+CGN
Sbjct: 661 SYNPNKC-VRNCGNSSQRWYHIPRSFMNDSINTLILFEEIGGNPQMVSVQTITIGTICGN 720

Query: 122 ELFGR------------EDVSFLKSNMLTMKI-PFKQGSWDVT-NNTILVEKCSTLLK 154
              G              ++ F        K   F+ G WDVT + TI+VEK    +K
Sbjct: 721 ANEGSTLELSCQGGHVISEIQFASYGHPEGKCGSFQSGLWDVTKSTTIIVEKACIGMK 777

[Close]
BLAST of CmaCh03G001960 vs. TrEMBL
Match: G7K042_MEDTR (Beta-galactosidase OS=Medicago truncatula GN=MTR_5g024080 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-14
Identity = 60/170 (35.29%), Postives = 81/170 (47.65%), Query Frame = 1 

Query: 2   KNLGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQSDNFGLLSLLEMMIAVRPVTIEVH 61
           K L WY+A FK+P GTNP+  D+QG+GKG AWVNG S      S +         T +  
Sbjct: 603 KPLIWYRAKFKSPFGTNPIVVDLQGLGKGHAWVNGHSIGRYWSSWISPSDGCSD-TCDYR 662

Query: 62  MTLVIVL--KIVGIPLK----------DDDTNTLILFEEIGGRTQPVAIQTITIGTMCGN 121
              V V      G P +          + D NTL+LFEEIGG  Q V  QT+T GT+C N
Sbjct: 663 GNYVPVKCNTNCGSPSQRWYHVPRSFLNHDMNTLVLFEEIGGNPQSVQFQTVTTGTICAN 722

Query: 122 ELFGREDVSFLKSNMLTMKI-------------PFKQGSWDVTNNTILVE 147
              G +     +S  +  +I              FK+G++D  N+  +VE
Sbjct: 723 VYEGAQFELSCQSGQVMSQIQFASYGNPEGQCGSFKKGNFDAANSQSVVE 771

[Close]
BLAST of CmaCh03G001960 vs. TrEMBL
Match: A0A0A0KRM6_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_5G169120 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 63/155 (40.65%), Postives = 76/155 (49.03%), Query Frame = 1 

Query: 18  NPVAFDMQGMGKGQAWVNGQS----------DNFGLLSLLEMMIAVRPVTIEVHMTLVIV 77
           +PV  DMQGMGKGQAWVNGQS           N    +  +   A  P    V       
Sbjct: 542 DPVVLDMQGMGKGQAWVNGQSIGRFWPSFIAGNDSCSATCDYRGAYNPSKC-VENCGNPS 601

Query: 78  LKIVGIPLK--DDDTNTLILFEEIGGRTQPVAIQTITIGTMCGNELFGR----------- 137
            +   +P      DTNTLILFEEIGG  Q V++QTITIGT+CGN   G            
Sbjct: 602 QRWYHVPRSFLSSDTNTLILFEEIGGNPQQVSVQTITIGTICGNANEGSTLELSCQGGHV 661

Query: 138 -EDVSFLKSNMLTMKI-PFKQGSWDVTNNTILVEK 148
             ++ F        K   FK+GSWDVTN  ++VEK
Sbjct: 662 ISEIQFASYGNPGGKCGSFKKGSWDVTNIALVVEK 695

[Close]
BLAST of CmaCh03G001960 vs. TAIR10
Match: AT5G20710.1 (AT5G20710.1 beta-galactosidase 7)

HSP 1 Score: 63.9 bits (154), Expect = 9.7e-11
Identity = 41/124 (33.06%), Postives = 55/124 (44.35%), Query Frame = 1 

Query: 4   LGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQS-------------------DNFGLL 63
           L WYKA FK PLG  PV  D+ G+GKG+AW+NGQS                   D  G  
Sbjct: 622 LTWYKAKFKAPLGKEPVIVDLNGLGKGEAWINGQSIGRYWPSFNSSDDGCKDECDYRGAY 681

Query: 64  SLLEM-MIAVRPVTIEVHMTLVIVLKIVGIPLKDDDTNTLILFEEIGGRTQPVAIQTITI 108
              +   +  +P     H+            L     NT+ LFEE+GG    V  +T+ +
Sbjct: 682 GSDKCAFMCGKPTQRWYHVPRSF--------LNASGHNTITLFEEMGGNPSMVNFKTVVV 737

[Close]
BLAST of CmaCh03G001960 vs. TAIR10
Match: AT1G77410.1 (AT1G77410.1 beta-galactosidase 16)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 39/106 (36.79%), Postives = 53/106 (50.00%), Query Frame = 1 

Query: 4   LGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQSDNFGLLSLLEMMIAVRPVTIEVHMT 63
           L WYKASF TP G +PVA ++  MGKG+AWVNGQS   G   +        P  I  H+ 
Sbjct: 608 LTWYKASFDTPEGEDPVALNLGSMGKGEAWVNGQS--IGRYWVSFHTYKGNPSQIWYHIP 667

Query: 64  LVIVLKIVGIPLKDDDTNTLILFEEIGGRTQPVAIQTITIGTMCGN 110
                      LK +    +IL EE  G    + I T+++  +CG+
Sbjct: 668 RSF--------LKPNSNLLVILEEEREGNPLGITIDTVSVTEVCGH 703

[Close]
BLAST of CmaCh03G001960 vs. TAIR10
Match: AT1G31740.1 (AT1G31740.1 beta-galactosidase 15)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-09
Identity = 33/101 (32.67%), Postives = 47/101 (46.53%), Query Frame = 1 

Query: 9   ASFKTPLGTNPVAFDMQGMGKGQAWVNGQSDNFGLLSLLEMMIAVRPVTIEVHMTLVIVL 68
           +++  PLG+ PV  D+ G+GKG AW+NG +      + L  +                  
Sbjct: 627 STWSAPLGSEPVVVDLLGLGKGTAWINGNNIGRYWPAFLSDI------------------ 686

Query: 69  KIVGIPLKDDDTNTLILFEEIGGRTQPVAIQTITIGTMCGN 110
                    D  NTL+LFEEIGG    V  QTI +G++C N
Sbjct: 687 ---------DGDNTLVLFEEIGGNPSLVNFQTIGVGSVCAN 700

[Close]
BLAST of CmaCh03G001960 vs. TAIR10
Match: AT2G32810.1 (AT2G32810.1 beta galactosidase 9)

HSP 1 Score: 58.2 bits (139), Expect = 5.3e-09
Identity = 37/122 (30.33%), Postives = 54/122 (44.26%), Query Frame = 1 

Query: 6   WYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQ---------SDNFGLLSLLEMMIAV--- 65
           WYK  F  P GT+PV  +++ MG+GQAWVNGQ         S   G     +   A    
Sbjct: 653 WYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHIGRYWNIISQKDGCDRTCDYRGAYNSD 712

Query: 66  -------RPVTIEVHMTLVIVLKIVGIPLKDDDTNTLILFEEIGGRTQPVAIQTITIGTM 109
                  +P     H+    +            +N L+LFEE GG    ++++T+T G +
Sbjct: 713 KCTTNCGKPTQTRYHVPRSWL---------KPSSNLLVLFEETGGNPFKISVKTVTAGIL 765

[Close]
BLAST of CmaCh03G001960 vs. TAIR10
Match: AT1G45130.1 (AT1G45130.1 beta-galactosidase 5)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-08
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 

Query: 4   LGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQS 39
           L WYKA F  P G  P+A D++ MGKGQAW+NGQS
Sbjct: 624 LTWYKAYFDAPRGNEPLALDLKSMGKGQAWINGQS 658

[Close]
BLAST of CmaCh03G001960 vs. NCBI nr
Match: gi|659100539|ref|XP_008451143.1| (PREDICTED: beta-galactosidase 15-like [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 2.3e-22
Identity = 77/171 (45.03%), Postives = 89/171 (52.05%), Query Frame = 1 

Query: 2   KNLGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQS----------DNFGLLSLLEMMI 61
           + + WYK SFKTP GT+PV  DMQGMGKGQAWVNGQS           N    +  +   
Sbjct: 733 RRMTWYKTSFKTPPGTDPVTLDMQGMGKGQAWVNGQSIGRFWPSFIAGNDSCSTTCDYRG 792

Query: 62  AVRPVTIEVHMTLVIVLKIVGIPLK--DDDTNTLILFEEIGGRTQPVAIQTITIGTMCGN 121
           A  P    V        +   IP     DDTNTLILFEEIGG  Q V++QTITIGT+CGN
Sbjct: 793 AYNPSKC-VENCGNPSQRWYHIPRSFLSDDTNTLILFEEIGGNPQQVSVQTITIGTICGN 852

Query: 122 ELFGR------------EDVSFLKSNMLTMKI-PFKQGSWDVTNNTILVEK 148
              G              ++ F        K   FKQGSWDV N+ ILVEK
Sbjct: 853 ANEGSTLELSCQGGHIISEIQFASYGNPEGKCGSFKQGSWDVINSAILVEK 902

[Close]
BLAST of CmaCh03G001960 vs. NCBI nr
Match: gi|659074621|ref|XP_008437703.1| (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 9.7e-21
Identity = 72/171 (42.11%), Postives = 87/171 (50.88%), Query Frame = 1 

Query: 2   KNLGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQS----------DNFGLLSLLEMMI 61
           + + WYK SFKTP G +PV  DMQGMGKGQAWVNGQS           N    +  +   
Sbjct: 614 RRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQSIGRFWPSFIAGNDSCSATCDYRG 673

Query: 62  AVRPVTIEVHMTLVIVLKIVGIPLK--DDDTNTLILFEEIGGRTQPVAIQTITIGTMCGN 121
           A  P    V        +   +P      DTNTLILFEEIGG  Q V++QTITIGT+CGN
Sbjct: 674 AYNPSKC-VENCGNPSQRWYHVPRSFLSSDTNTLILFEEIGGNPQQVSVQTITIGTICGN 733

Query: 122 ELFGR------------EDVSFLKSNMLTMKI-PFKQGSWDVTNNTILVEK 148
              G              ++ F        K   FK+GSWDVTN+ + VEK
Sbjct: 734 ANEGSTLELSCQGGHVISEIQFASYGNPEGKCGSFKEGSWDVTNSALFVEK 783

[Close]
BLAST of CmaCh03G001960 vs. NCBI nr
Match: gi|778665388|ref|XP_004139151.2| (PREDICTED: beta-galactosidase 7-like [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-20
Identity = 71/174 (40.80%), Postives = 90/174 (51.72%), Query Frame = 1 

Query: 2   KNLGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQSDNFGLLSLLEMMIAVRPVTIEV- 61
           + + WYK SFKTP G +PV  DMQGMGKG+AW+NGQS    +       IA      E  
Sbjct: 596 RRMTWYKTSFKTPSGIDPVTLDMQGMGKGEAWINGQS----IGRFWPSFIAGNDNCSETC 655

Query: 62  -HMTLVIVLKIVG-----------IPLK--DDDTNTLILFEEIGGRTQPVAIQTITIGTM 121
            +       K VG           IP     ++TNTL+LFEEIGG  Q V++QTITIGT+
Sbjct: 656 DYRGAYDPSKCVGNCGNPSQRWYHIPRSFLSNNTNTLVLFEEIGGSPQQVSVQTITIGTI 715

Query: 122 CGNELFGREDVSFLKSNMLTMKI-------------PFKQGSWDVTNNTILVEK 148
           CGN   G       +   +  +I              FKQGSWDVTN+ +L+EK
Sbjct: 716 CGNANEGSTLELSCQGEYIISEIQFASYGNPKGKCGSFKQGSWDVTNSALLLEK 765

[Close]
BLAST of CmaCh03G001960 vs. NCBI nr
Match: gi|778665294|ref|XP_004135782.2| (PREDICTED: beta-galactosidase 15-like [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-20
Identity = 73/171 (42.69%), Postives = 86/171 (50.29%), Query Frame = 1 

Query: 2   KNLGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQS----------DNFGLLSLLEMMI 61
           + + WYK SFKTP G + V  DMQGMGKGQAWVNGQS           N    +  +   
Sbjct: 629 RRMTWYKTSFKTPSGIDRVTLDMQGMGKGQAWVNGQSIGRFWPSFIASNDSCSTTCDYRG 688

Query: 62  AVRPVTIEVHMTLVIVLKIVGIPLK--DDDTNTLILFEEIGGRTQPVAIQTITIGTMCGN 121
           A  P    V        +   IP     DDTNTL+LFEEIGG  Q V++QTITIGT+CGN
Sbjct: 689 AYNPSKC-VENCGNPSQRWYHIPRSFLSDDTNTLVLFEEIGGNPQQVSVQTITIGTICGN 748

Query: 122 ELFGR------------EDVSFLKSNMLTMKI-PFKQGSWDVTNNTILVEK 148
              G              ++ F        K   FKQGSW V N+ ILVEK
Sbjct: 749 ANEGSTLELSCQGGHIISEIQFASYGNPEGKCGSFKQGSWHVINSAILVEK 798

[Close]
BLAST of CmaCh03G001960 vs. NCBI nr
Match: gi|778665392|ref|XP_011648551.1| (PREDICTED: beta-galactosidase 15-like [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-20
Identity = 71/171 (41.52%), Postives = 87/171 (50.88%), Query Frame = 1 

Query: 2   KNLGWYKASFKTPLGTNPVAFDMQGMGKGQAWVNGQS----------DNFGLLSLLEMMI 61
           + + WYK SFKTP G +PV  DMQGMGKGQAWVNGQS           N    +  +   
Sbjct: 614 RRMTWYKTSFKTPAGIDPVVLDMQGMGKGQAWVNGQSIGRFWPSFIAGNDSCSATCDYRG 673

Query: 62  AVRPVTIEVHMTLVIVLKIVGIPLK--DDDTNTLILFEEIGGRTQPVAIQTITIGTMCGN 121
           A  P    V        +   +P      DTNTLILFEEIGG  Q V++QTITIGT+CGN
Sbjct: 674 AYNPSKC-VENCGNPSQRWYHVPRSFLSSDTNTLILFEEIGGNPQQVSVQTITIGTICGN 733

Query: 122 ELFGR------------EDVSFLKSNMLTMKI-PFKQGSWDVTNNTILVEK 148
              G              ++ F        K   FK+GSWDVTN  +++EK
Sbjct: 734 ANEGSTLELSCQGGHVISEIQFASYGNPGGKCGSFKKGSWDVTNIALILEK 783

The following BLAST results are available for this feature:
BLAST of CmaCh03G001960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BGAL7_ARATH1.7e-0933.06Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2[more]
BGAL_BRAOL5.0e-0931.45Beta-galactosidase OS=Brassica oleracea PE=2 SV=1[more]
BGA15_ARATH1.5e-0835.64Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1[more]
BGA16_ARATH2.5e-0836.79Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2[more]
BGAL9_ARATH9.4e-0830.33Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1[more]
BLAST of CmaCh03G001960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXX7_CUCSA2.6e-2040.80Beta-galactosidase OS=Cucumis sativus GN=Csa_1G643050 PE=3 SV=1[more]
A0A0A0M006_CUCSA4.4e-2041.52Beta-galactosidase OS=Cucumis sativus GN=Csa_1G650110 PE=3 SV=1[more]
A0A0A0LDH9_CUCSA1.6e-1739.33Beta-galactosidase OS=Cucumis sativus GN=Csa_3G550690 PE=3 SV=1[more]
G7K042_MEDTR2.8e-1435.29Beta-galactosidase OS=Medicago truncatula GN=MTR_5g024080 PE=3 SV=1[more]
A0A0A0KRM6_CUCSA1.8e-1340.65Beta-galactosidase OS=Cucumis sativus GN=Csa_5G169120 PE=3 SV=1[more]
BLAST of CmaCh03G001960 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20710.19.7e-1133.06 beta-galactosidase 7[more]
AT1G77410.11.4e-0936.79 beta-galactosidase 16[more]
AT1G31740.14.1e-0932.67 beta-galactosidase 15[more]
AT2G32810.15.3e-0930.33 beta galactosidase 9[more]
AT1G45130.12.6e-0862.86 beta-galactosidase 5[more]
BLAST of CmaCh03G001960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659100539|ref|XP_008451143.1|2.3e-2245.03PREDICTED: beta-galactosidase 15-like [Cucumis melo][more]
gi|659074621|ref|XP_008437703.1|9.7e-2142.11PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase 7-like [Cucumis melo][more]
gi|778665388|ref|XP_004139151.2|3.7e-2040.80PREDICTED: beta-galactosidase 7-like [Cucumis sativus][more]
gi|778665294|ref|XP_004135782.2|6.3e-2042.69PREDICTED: beta-galactosidase 15-like [Cucumis sativus][more]
gi|778665392|ref|XP_011648551.1|6.3e-2041.52PREDICTED: beta-galactosidase 15-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001944Glycoside_Hdrlase_35
IPR008979Galactose-bd-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G001960.1CmaCh03G001960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001944Glycoside hydrolase, family 35PANTHERPTHR23421BETA-GALACTOSIDASE RELATEDcoord: 68..109
score: 2.4E-21coord: 2..38
score: 2.4
IPR008979Galactose-binding domain-likeunknownSSF49785Galactose-binding domain-likecoord: 3..38
score: 3.1
NoneNo IPR availablePANTHERPTHR23421:SF49BETA-GALACTOSIDASE 15-RELATEDcoord: 68..109
score: 2.4E-21coord: 2..38
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G001960Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G001960Cucurbita pepo (Zucchini)cmacpeB672
CmaCh03G001960Bottle gourd (USVL1VR-Ls)cmalsiB601
CmaCh03G001960Silver-seed gourdcarcmaB0812
CmaCh03G001960Silver-seed gourdcarcmaB1427
CmaCh03G001960Watermelon (97103) v2cmawmbB692
CmaCh03G001960Wax gourdcmawgoB0793
CmaCh03G001960Cucurbita maxima (Rimu)cmacmaB524
CmaCh03G001960Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G001960Cucurbita moschata (Rifu)cmacmoB655
CmaCh03G001960Cucurbita moschata (Rifu)cmacmoB668
CmaCh03G001960Watermelon (Charleston Gray)cmawcgB593
CmaCh03G001960Watermelon (97103) v1cmawmB642