CmaCh03G001950 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G001950
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description30S ribosomal protein S2, chloroplastic
LocationCma_Chr03 : 2942652 .. 2943211 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGTTAATAANAGGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAATGTAAAGGTATTCATATTATGAATCTTACTAGAACTGCTCGTTTTTTATCATAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTGTTAATTGTTGGTACCAAAAATAAAGCAGCAGATTCAGTAGCCCGGGCTGCAACAAGAGCTCGGTGTCATTAT

mRNA sequence

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAATGTAAAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTGTTAATTGTTGGTACCAAAAATAAAGCAGCAGATTCAGTAGCCCGGGCTGCAACAAGAGCTCGGTGTCATTAT

Coding sequence (CDS)

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCCGGGCTGCAACAAGGGCTCGGTGTCATTATGAAGTGGGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAATGTAAAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTGTTAATTGTTGGTACCAAAAATAAAGCAGCAGATTCAGTAGCCCGGGCTGCAACAAGAGCTCGGTGTCATTAT

Protein sequence

MMEAGVHFGHGTRKWNPRMAPYISAKRKASRGKQFLIVGTKNKAADSVARAATRARCHYEVGGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCKVFDAASRGKQLLIVGTKNKAADSVARAATRARCHY
Homology
[Close]
BLAST of CmaCh03G001950 vs. Swiss-Prot
Match: RR2_SPIOL (30S ribosomal protein S2, chloroplastic OS=Spinacia oleracea GN=rps2 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-32
Identity = 70/95 (73.68%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRM+PYISAKCK                    
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDA+SRGKQ LIVGTKNKAADSVARAA RARCHY
Sbjct: 61  VFDASSRGKQFLIVGTKNKAADSVARAAIRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. Swiss-Prot
Match: RR2_CUCSA (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus GN=rps2 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-32
Identity = 71/95 (74.74%), Postives = 72/95 (75.79%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAA+RGKQ LIVGTKNKAADSVARAATR RCHY
Sbjct: 61  VFDAATRGKQFLIVGTKNKAADSVARAATRTRCHY 95

[Close]
BLAST of CmaCh03G001950 vs. Swiss-Prot
Match: RR2_EUCGG (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps2 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-31
Identity = 71/95 (74.74%), Postives = 72/95 (75.79%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAA RARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. Swiss-Prot
Match: RR2_VITVI (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera GN=rps2 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.5e-31
Identity = 70/95 (73.68%), Postives = 72/95 (75.79%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAA +ARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAAIKARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. Swiss-Prot
Match: RR2_CITSI (30S ribosomal protein S2, chloroplastic OS=Citrus sinensis GN=rps2 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.2e-31
Identity = 69/95 (72.63%), Postives = 70/95 (73.68%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           M RRYWNIHLEEMMEAG+HFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MARRYWNIHLEEMMEAGIHFGHGTRKWNPRMAPYISAKHKGIHITNLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAAD VARAA RARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADLVARAAIRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. TrEMBL
Match: X2F5D2_LAGSI (30S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria GN=rps2 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-31
Identity = 73/95 (76.84%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAATRARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. TrEMBL
Match: A0A0S2IFI8_9ROSI (Ribosomal protein S2 OS=Cucurbita lundelliana GN=rps2 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-31
Identity = 73/95 (76.84%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAATRARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. TrEMBL
Match: A0A0S2IFA9_9ROSI (Ribosomal protein S2 OS=Cucurbita ficifolia GN=rps2 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-31
Identity = 73/95 (76.84%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAATRARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. TrEMBL
Match: A0A0S2IFG5_9ROSI (Ribosomal protein S2 OS=Cucurbita ecuadorensis GN=rps2 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-31
Identity = 73/95 (76.84%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAATRARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. TrEMBL
Match: A0A0S2IE31_9ROSI (Ribosomal protein S2 OS=Cucurbita argyrosperma subsp. sororia GN=rps2 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-31
Identity = 73/95 (76.84%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAATRARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. TAIR10
Match: ATCG00160.1 (ATCG00160.1 ribosomal protein S2)

HSP 1 Score: 130.2 bits (326), Expect = 1.0e-30
Identity = 67/95 (70.53%), Postives = 69/95 (72.63%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MT+RYWNI LEEMM AGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAAD V+RAA RARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. NCBI nr
Match: gi|1002166186|ref|YP_009236269.1| (ribosomal protein S2 (chloroplast) [Gynostemma pentaphyllum])

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-31
Identity = 73/95 (76.84%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAATRARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. NCBI nr
Match: gi|952954376|gb|ALO21740.1| (ribosomal protein S2 (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-31
Identity = 73/95 (76.84%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAATRARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. NCBI nr
Match: gi|595645475|gb|AHM88934.1| (ribosomal protein S2, partial (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-31
Identity = 73/95 (76.84%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAATRARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. NCBI nr
Match: gi|952954554|gb|ALO21915.1| (ribosomal protein S2 (plastid) [Cucurbita cordata])

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-31
Identity = 73/95 (76.84%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAATRARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHY 95

[Close]
BLAST of CmaCh03G001950 vs. NCBI nr
Match: gi|595647815|gb|AHM91235.1| (ribosomal protein S2 (chloroplast) [Lagenaria siceraria])

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-31
Identity = 73/95 (76.84%), Postives = 73/95 (76.84%), Query Frame = 1 

Query: 65  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKCK-------------------- 124
           MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAK K                    
Sbjct: 1   MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDL 60

Query: 125 VFDAASRGKQLLIVGTKNKAADSVARAATRARCHY 140
           VFDAASRGKQ LIVGTKNKAADSVARAATRARCHY
Sbjct: 61  VFDAASRGKQFLIVGTKNKAADSVARAATRARCHY 95

The following BLAST results are available for this feature:
BLAST of CmaCh03G001950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR2_SPIOL2.2e-3273.6830S ribosomal protein S2, chloroplastic OS=Spinacia oleracea GN=rps2 PE=1 SV=1[more]
RR2_CUCSA2.2e-3274.7430S ribosomal protein S2, chloroplastic OS=Cucumis sativus GN=rps2 PE=3 SV=1[more]
RR2_EUCGG1.1e-3174.7430S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus G... [more]
RR2_VITVI2.5e-3173.6830S ribosomal protein S2, chloroplastic OS=Vitis vinifera GN=rps2 PE=3 SV=1[more]
RR2_CITSI4.2e-3172.6330S ribosomal protein S2, chloroplastic OS=Citrus sinensis GN=rps2 PE=3 SV=1[more]
BLAST of CmaCh03G001950 vs. TrEMBL
Match NameE-valueIdentityDescription
X2F5D2_LAGSI3.8e-3176.8430S ribosomal protein S2, chloroplastic OS=Lagenaria siceraria GN=rps2 PE=3 SV=1[more]
A0A0S2IFI8_9ROSI3.8e-3176.84Ribosomal protein S2 OS=Cucurbita lundelliana GN=rps2 PE=3 SV=1[more]
A0A0S2IFA9_9ROSI3.8e-3176.84Ribosomal protein S2 OS=Cucurbita ficifolia GN=rps2 PE=3 SV=1[more]
A0A0S2IFG5_9ROSI3.8e-3176.84Ribosomal protein S2 OS=Cucurbita ecuadorensis GN=rps2 PE=3 SV=1[more]
A0A0S2IE31_9ROSI3.8e-3176.84Ribosomal protein S2 OS=Cucurbita argyrosperma subsp. sororia GN=rps2 PE=3 SV=1[more]
BLAST of CmaCh03G001950 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00160.11.0e-3070.53ATCG00160.1 ribosomal protein S2[more]
BLAST of CmaCh03G001950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1002166186|ref|YP_009236269.1|5.5e-3176.84ribosomal protein S2 (chloroplast) [Gynostemma pentaphyllum][more]
gi|952954376|gb|ALO21740.1|5.5e-3176.84ribosomal protein S2 (plastid) [Cucurbita argyrosperma][more]
gi|595645475|gb|AHM88934.1|5.5e-3176.84ribosomal protein S2, partial (chloroplast) [Lagenaria siceraria][more]
gi|952954554|gb|ALO21915.1|5.5e-3176.84ribosomal protein S2 (plastid) [Cucurbita cordata][more]
gi|595647815|gb|AHM91235.1|5.5e-3176.84ribosomal protein S2 (chloroplast) [Lagenaria siceraria][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001865Ribosomal_S2
IPR005706Ribosomal_S2_bac/mit/plastid
IPR018130Ribosomal_S2_CS
IPR023591Ribosomal_S2_flav_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0034654 nucleobase-containing compound biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009536 plastid
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G001950.1CmaCh03G001950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 1..28
score: 2.5E-8coord: 77..102
score: 1.
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidPANTHERPTHR1253430S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLARcoord: 68..139
score: 4.3
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00962RIBOSOMAL_S2_1coord: 74..85
scor
IPR023591Ribosomal protein S2, flavodoxin-like domainunknownSSF52313Ribosomal protein S2coord: 1..67
score: 2.88E-16coord: 74..139
score: 7.59
NoneNo IPR availableGENE3DG3DSA:3.40.50.10490coord: 28..59
score: 1.0E-5coord: 105..139
score: 2.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G001950Watermelon (97103) v2cmawmbB692
CmaCh03G001950Wax gourdcmawgoB0793
CmaCh03G001950Cucurbita maxima (Rimu)cmacmaB524
CmaCh03G001950Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G001950Cucurbita moschata (Rifu)cmacmoB655
CmaCh03G001950Cucurbita moschata (Rifu)cmacmoB668
CmaCh03G001950Watermelon (Charleston Gray)cmawcgB593
CmaCh03G001950Watermelon (97103) v1cmawmB642
CmaCh03G001950Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G001950Cucurbita pepo (Zucchini)cmacpeB672
CmaCh03G001950Bottle gourd (USVL1VR-Ls)cmalsiB601
CmaCh03G001950Silver-seed gourdcarcmaB0812
CmaCh03G001950Silver-seed gourdcarcmaB1427