CmaCh03G001940 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G001940
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPlant protein of unknown function (DUF247)
LocationCma_Chr03 : 2900882 .. 2901332 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATGAGCTTCAAAAATGGAGTTTTTGAAATCCCACCTATACTTATTGATTATTACTTTGAAACCATGATGCAAAACTTGATAGCGTTTGAGCATTTTTACGTTGGAAATGACAACAAATGTATCCAATGTGTCATTACTGGAACATTTGAGTTTACTTGTGAAAGTCGGAATCATAGTCAACAAAATTGTAGGTAGTAATATAGAAGTTTTAGAACTGTTTAACAATCTCTATAAATTTGTTACCGTCCCAAATTGTTGCCACTTCAACGATATCAACAAAGCTTTACGAGAACATTGCAATAGACGATGGAACAAGGTGATAGCTACACTCAAACATAACTATTTCAATACGCCATGGGCAATTGTCTCCTTCCATGGTGCAATTTTCCTCCTTAGTTTTGACAATGCTTCAAACTATATTTTTTGGTATATTCACATTTCTTAA

mRNA sequence

ATGAATATGAGCTTCAAAAATGGAGTTTTTGAAATCCCACCTATACTTATTGATTATTACTTTGAAACCATGATGCAAAACTTGATAGCGTTTGAGCATTTTTACGTTGGAAATGACAACAAATGTATCCAATGTGTCATTACTGGAACATTTGAGTTTACTTGTGAAAGTCGGAATCATAGTCAACAAAATTGTAGTAATATAGAAGTTTTAGAACTGTTTAACAATCTCTATAAATTTGTTACCGTCCCAAATTGTTGCCACTTCAACGATATCAACAAAGCTTTACGAGAACATTGCAATAGACGATGGAACAAGGTGATAGCTACACTCAAACATAACTATTTCAATACGCCATGGGCAATTGTCTCCTTCCATGGTGCAATTTTCCTCCTTAGTTTTGACAATGCTTCAAACTATATTTTTTGGTATATTCACATTTCTTAA

Coding sequence (CDS)

ATGAATATGAGCTTCAAAAATGGAGTTTTTGAAATCCCACCTATACTTATTGATTATTACTTTGAAACCATGATGCAAAACTTGATAGCGTTTGAGCATTTTTACGTTGGAAATGACAACAAATGTATCCAATGTGTCATTACTGGAACATTTGAGTTTACTTGTGAAAGTCGGAATCATAGTCAACAAAATTGTAGTAATATAGAAGTTTTAGAACTGTTTAACAATCTCTATAAATTTGTTACCGTCCCAAATTGTTGCCACTTCAACGATATCAACAAAGCTTTACGAGAACATTGCAATAGACGATGGAACAAGGTGATAGCTACACTCAAACATAACTATTTCAATACGCCATGGGCAATTGTCTCCTTCCATGGTGCAATTTTCCTCCTTAGTTTTGACAATGCTTCAAACTATATTTTTTGGTATATTCACATTTCTTAA

Protein sequence

MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVITGTFEFTCESRNHSQQNCSNIEVLELFNNLYKFVTVPNCCHFNDINKALREHCNRRWNKVIATLKHNYFNTPWAIVSFHGAIFLLSFDNASNYIFWYIHIS
Homology
[Close]
BLAST of CmaCh03G001940 vs. Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.0e-06
Identity = 33/142 (23.24%), Postives = 64/142 (45.07%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKC------IQCVITGTFEFT 60
           +N+  K    +IP +  D +  +   N +AFE FY  + N+       + C++    + T
Sbjct: 303 LNVRLKKNKLQIPQLRFDGFISSFFLNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVT 362

Query: 61  CESRNH---SQQNCSNIEVLELFNNLYKFVTVP-NCCHFNDINKALREHCNRRWNKVIAT 120
               +         SN EV E F  + K V    +  + N++ K + E+  + +N + A 
Sbjct: 363 FLRNDKLIIENHFGSNNEVSEFFKTISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAG 422

Query: 121 LKHNYFNTPWAIVSFHGAIFLL 133
            +H +F +PW  +S    +F++
Sbjct: 423 FRHTHFESPWTFLSSCAVLFVI 444

[Close]
BLAST of CmaCh03G001940 vs. TrEMBL
Match: A0A0A0LPJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380630 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.4e-28
Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNK-CIQCVITGTFEFTCESRN 60
           MN+SF+NGV +IP + ID  FE +++N+IAF+ +  GN N   I  V+        E   
Sbjct: 237 MNISFENGVLKIPCLEIDCTFEIVIRNVIAFDQYPAGNKNAYAIHYVLFLDDLINTEQDA 296

Query: 61  HSQQNC---------SNIEVLELFNNLYKFVTVPNCCHFNDINKALREHCNRRWNKVIAT 120
           H   N          S+ ++ E+FNNL K+VT P C HF+DI+K LR+HCN+RWNK IA+
Sbjct: 297 HLLANVGVIINTLGGSDKDITEMFNNLSKYVTFPVCSHFDDISKDLRKHCNKRWNKAIAS 356

Query: 121 LKHNYFNTPWAIVSFHGAIFLL 133
           LKHNYFNTPWAI+SF  A  L+
Sbjct: 357 LKHNYFNTPWAIISFLAATILI 378

[Close]
BLAST of CmaCh03G001940 vs. TrEMBL
Match: A0A0A0LM96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 68/143 (47.55%), Postives = 90/143 (62.94%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVITGTFEFTCESRN- 60
           MN+ F+NG+ EIPP+ ID YFE MM+NL+AFEHF V  +N  +   +T         ++ 
Sbjct: 287 MNIRFENGILEIPPLHIDDYFEPMMRNLLAFEHFPVEVNNTYVIPYVTFMDYLISTEKDV 346

Query: 61  ---------HSQQNCSNIEVLELFNNLYKFV-TVPNCCHFNDINKALREHCNRRWNKVIA 120
                     +    S+ EV +LFNNL KFV + PN  +FN+I++ LREHC+R WNK  A
Sbjct: 347 NLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSPNDNYFNNISEGLREHCDRWWNKAKA 406

Query: 121 TLKHNYFNTPWAIVSFHGAIFLL 133
           +LKHNYFNTPWA +SF  A  LL
Sbjct: 407 SLKHNYFNTPWAAISFSAATVLL 429

[Close]
BLAST of CmaCh03G001940 vs. TrEMBL
Match: A0A0A0LLX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-25
Identity = 68/144 (47.22%), Postives = 90/144 (62.50%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVITGTFEFTCESRNH 60
           MN+ FKNG+ EIPP+ ID YFE MM++L+AFEHF +   N  +   IT   ++   + N 
Sbjct: 316 MNIKFKNGILEIPPLHIDDYFEPMMRDLLAFEHFPIEVQNTYVIPYIT-FMDYLISTEND 375

Query: 61  -----------SQQNCSNIEVLELFNNLYKFVTVP-NCCHFNDINKALREHCNRRWNKVI 120
                      +    S+ EV +LFNNL KFV+   N  +FNDI++ LR+HC+R WNK  
Sbjct: 376 VNLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSFNNIYFNDISERLRKHCDRWWNKAK 435

Query: 121 ATLKHNYFNTPWAIVSFHGAIFLL 133
           ATLKHNY NTPWA +SF  A+ LL
Sbjct: 436 ATLKHNYCNTPWAFISFLAALILL 458

[Close]
BLAST of CmaCh03G001940 vs. TrEMBL
Match: A0A0A0LQ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.4e-25
Identity = 65/142 (45.77%), Postives = 88/142 (61.97%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVITGTFEFTCESRNH 60
           MN+SFKNGV EIPPI+I+  FE +++N++AFE F  GN  K     +T   +     ++ 
Sbjct: 317 MNISFKNGVLEIPPIVIEGTFEVLIRNVLAFEIFPAGNQKKYAIQYVTFLDDLISTEKDL 376

Query: 61  ----------SQQNCSNIEVLELFNNLYKFVTVPNCCHFNDINKALREHCNRRWNKVIAT 120
                     +    S+ EV ELFN+L K VT P   +F+D +KALR HC+  WNK  A+
Sbjct: 377 CLLVKAGVIINDTGGSDKEVSELFNSLTKLVTTPLPSYFDDTSKALRVHCDGSWNKAKAS 436

Query: 121 LKHNYFNTPWAIVSFHGAIFLL 133
           LKH+YFNTPWAI+SF  A FL+
Sbjct: 437 LKHSYFNTPWAIISFFAATFLI 458

[Close]
BLAST of CmaCh03G001940 vs. TrEMBL
Match: A0A0A0LSF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.9e-22
Identity = 66/143 (46.15%), Postives = 83/143 (58.04%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVITGTFEFTCESRN- 60
           MN++F NGV EIPP+ I   FE + +NL+AFE F  GN        I          ++ 
Sbjct: 354 MNITFTNGVLEIPPLNICDEFELLFRNLVAFEQFQAGNGKMYATQYIIFMDNLINTKKDV 413

Query: 61  ----HSQQNCSNI-----EVLELFNNLYKFVT-VPNCCHFNDINKALREHCNRRWNKVIA 120
               +S    +NI     EV +LFN L KF++  P    FNDI+K L +HCNRRWNK  A
Sbjct: 414 RLLVNSGVIINNIGGSYKEVSKLFNKLGKFISGSPTSSEFNDISKDLHKHCNRRWNKAKA 473

Query: 121 TLKHNYFNTPWAIVSFHGAIFLL 133
           +LKHNYFNTPWAIVSF  A  L+
Sbjct: 474 SLKHNYFNTPWAIVSFIAASCLI 496

[Close]
BLAST of CmaCh03G001940 vs. TAIR10
Match: AT3G50170.1 (AT3G50170.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14
Identity = 47/140 (33.57%), Postives = 68/140 (48.57%), Query Frame = 1 

Query: 2   NMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVITGTFEFTCESRNHS 61
           ++ FKNG  EIP +LI    +++  NLIAFE  ++ + N     +I              
Sbjct: 381 DIEFKNGYLEIPKLLIHDGTKSLFSNLIAFEQCHIESSNHITSYIIFMDNLINSSEDVSY 440

Query: 62  QQNC--------SNIEVLELFNNLYKFVTV-PNCCHFNDINKALREHCNRRWNKVIATLK 121
              C        S+ EV +LFN L + V   P   H + ++  +  + NR+WN + ATL 
Sbjct: 441 LHYCGIIEHWLGSDSEVADLFNRLCQEVVFDPKDSHLSRLSGDVNRYYNRKWNVLKATLT 500

Query: 122 HNYFNTPWAIVSFHGAIFLL 133
           H YFN PWA  SF  A+ LL
Sbjct: 501 HKYFNNPWAYFSFSAAVILL 520

[Close]
BLAST of CmaCh03G001940 vs. TAIR10
Match: AT4G31980.1 (AT4G31980.1 unknown protein)

HSP 1 Score: 74.3 bits (181), Expect = 6.9e-14
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVITGTF-------EF 60
           +++SF +GV +IP I++D   E++ +N+I FE     N N     ++ G F       + 
Sbjct: 528 LDISFADGVLKIPTIVVDDLTESLYKNIIGFEQCRCSNKNFLDYIMLLGCFIKSPTDADL 587

Query: 61  TCESRNHSQQNCSNIEVLELFNNLYKFVTVPNCCHFNDINKALREHCNRRWNKVIATLKH 120
              S        ++++V  LFN++ K V      +F+ +++ L+ +CN  WN+  A L+ 
Sbjct: 588 LIHSGIIVNYLGNSVDVSNLFNSISKEVIYDRRFYFSMLSENLQAYCNTPWNRWKAILRR 647

Query: 121 NYFNTPWAIVSFHGAIFLL 133
           +YF+ PWA+ S   A+ LL
Sbjct: 648 DYFHNPWAVASVFAALLLL 666

[Close]
BLAST of CmaCh03G001940 vs. TAIR10
Match: AT3G50150.1 (AT3G50150.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13
Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 1 

Query: 2   NMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVITGTFEFTCESRNHS 61
           ++ FKNG  +IP +LI    +++  NLIAFE  +  + N      IT    F     N S
Sbjct: 351 DIEFKNGYLKIPKLLIHDGTKSLFSNLIAFEQCHTQSSNN-----ITSYIIFMDNLINSS 410

Query: 62  QQNC-------------SNIEVLELFNNLYKFVTV-PNCCHFNDINKALREHCNRRWNKV 121
           Q                S+ EV +LFN L K V   P   + + +++ +  + +R+WN +
Sbjct: 411 QDVSYLHHDGIIEHWLGSDSEVADLFNRLCKEVIFDPKDGYLSQLSREVNRYYSRKWNSL 470

Query: 122 IATLKHNYFNTPWAIVSFHGAIFLL 133
            ATL+  YFN PWA  SF  A+ LL
Sbjct: 471 KATLRQKYFNNPWAYFSFSAAVILL 490

[Close]
BLAST of CmaCh03G001940 vs. TAIR10
Match: AT3G50130.1 (AT3G50130.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-13
Identity = 46/142 (32.39%), Postives = 70/142 (49.30%), Query Frame = 1 

Query: 2   NMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVI----------TGTF 61
           ++ FKNG  EIP +LI    +++  NLIAFE  ++ + N     +I             +
Sbjct: 406 DIRFKNGYLEIPKLLIHDGTKSLFSNLIAFEQCHIDSSNDITSYIIFMDNLIDSSEDVRY 465

Query: 62  EFTCESRNHSQQNCSNIEVLELFNNLYKFVTV-PNCCHFNDINKALREHCNRRWNKVIAT 121
              C    H   N  + EV +LFN L + V   P   + + ++  +  + +R+WN + A 
Sbjct: 466 LHYCGIIEHWLGN--DYEVADLFNRLCQEVAFDPQNSYLSQLSNKVDRNYSRKWNVLKAI 525

Query: 122 LKHNYFNTPWAIVSFHGAIFLL 133
           LKH YFN PWA  SF  A+ LL
Sbjct: 526 LKHKYFNNPWAYFSFFAALVLL 545

[Close]
BLAST of CmaCh03G001940 vs. TAIR10
Match: AT3G50160.1 (AT3G50160.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-13
Identity = 50/147 (34.01%), Postives = 72/147 (48.98%), Query Frame = 1 

Query: 2   NMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVITGTFEFTCESRNHS 61
           ++ FKNG  +IP +LI    +++  NLIAFE  ++ +  K     IT    F     N S
Sbjct: 343 DIEFKNGYLKIPKLLIHDGTKSLFLNLIAFEQCHIKSSKK-----ITSYIIFMDNLINSS 402

Query: 62  QQNC-------------SNIEVLELFNNLYKFVTV-PNCCHFNDINKALREHCNRRWNKV 121
           +                S+ EV +LFN L K V   PN  + + +   +  +  R+WN +
Sbjct: 403 EDVSYLHHYGIIENWLGSDSEVSDLFNGLGKEVIFDPNDGYLSALTGEVNIYYRRKWNYL 462

Query: 122 IATLKHNYFNTPWAIVSFHGAIFLLSF 135
            ATL+H YFN PWA  SF  A+ LL F
Sbjct: 463 KATLRHKYFNNPWAYFSFIAAVTLLIF 484

[Close]
BLAST of CmaCh03G001940 vs. NCBI nr
Match: gi|778674385|ref|XP_011650198.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNK-CIQCVITGTFEFTCESRN 60
           MN+SF+NGV +IP + ID  FE +++N+IAF+ +  GN N   I  V+        E   
Sbjct: 250 MNISFENGVLKIPCLEIDCTFEIVIRNVIAFDQYPAGNKNAYAIHYVLFLDDLINTEQDA 309

Query: 61  HSQQNC---------SNIEVLELFNNLYKFVTVPNCCHFNDINKALREHCNRRWNKVIAT 120
           H   N          S+ ++ E+FNNL K+VT P C HF+DI+K LR+HCN+RWNK IA+
Sbjct: 310 HLLANVGVIINTLGGSDKDITEMFNNLSKYVTFPVCSHFDDISKDLRKHCNKRWNKAIAS 369

Query: 121 LKHNYFNTPWAIVSFHGAIFLL 133
           LKHNYFNTPWAI+SF  A  L+
Sbjct: 370 LKHNYFNTPWAIISFLAATILI 391

[Close]
BLAST of CmaCh03G001940 vs. NCBI nr
Match: gi|700207815|gb|KGN62934.1| (hypothetical protein Csa_2G380630 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNK-CIQCVITGTFEFTCESRN 60
           MN+SF+NGV +IP + ID  FE +++N+IAF+ +  GN N   I  V+        E   
Sbjct: 237 MNISFENGVLKIPCLEIDCTFEIVIRNVIAFDQYPAGNKNAYAIHYVLFLDDLINTEQDA 296

Query: 61  HSQQNC---------SNIEVLELFNNLYKFVTVPNCCHFNDINKALREHCNRRWNKVIAT 120
           H   N          S+ ++ E+FNNL K+VT P C HF+DI+K LR+HCN+RWNK IA+
Sbjct: 297 HLLANVGVIINTLGGSDKDITEMFNNLSKYVTFPVCSHFDDISKDLRKHCNKRWNKAIAS 356

Query: 121 LKHNYFNTPWAIVSFHGAIFLL 133
           LKHNYFNTPWAI+SF  A  L+
Sbjct: 357 LKHNYFNTPWAIISFLAATILI 378

[Close]
BLAST of CmaCh03G001940 vs. NCBI nr
Match: gi|659088828|ref|XP_008445182.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 68/142 (47.89%), Postives = 85/142 (59.86%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNK-CIQCVITGTFEFTCESRN 60
           MN+ FKNGV EIP I ID  FE +++N+IAF+ +  GN+    I  V+        E   
Sbjct: 368 MNIGFKNGVLEIPCIDIDCTFEVVIRNVIAFDQYPAGNEKMYAIHYVLFLDDLINTEQDA 427

Query: 61  HSQQNC---------SNIEVLELFNNLYKFVTVPNCCHFNDINKALREHCNRRWNKVIAT 120
           H              S+ ++ E+FN   KFVT P C HF+DINKALR HCN RWN   A+
Sbjct: 428 HLLTKAGIIINTFGGSDKDITEMFNRFSKFVTFPICSHFDDINKALRMHCNGRWNMAKAS 487

Query: 121 LKHNYFNTPWAIVSFHGAIFLL 133
           LKHNYFNTPWAI+SF  A FL+
Sbjct: 488 LKHNYFNTPWAIISFGAATFLI 509

[Close]
BLAST of CmaCh03G001940 vs. NCBI nr
Match: gi|659088838|ref|XP_008445188.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-26
Identity = 69/143 (48.25%), Postives = 90/143 (62.94%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVITGTFEFTCESRN- 60
           +N+ F+NG+ EIPP+ ID YFE MM+NL+AFEHF V   N  +   +T         ++ 
Sbjct: 323 LNIRFENGILEIPPLHIDDYFEPMMRNLLAFEHFPVEVKNTYVIPYLTFMDYLIITEKDV 382

Query: 61  ---------HSQQNCSNIEVLELFNNLYKFV-TVPNCCHFNDINKALREHCNRRWNKVIA 120
                     +    S+ EV +LFNNL KFV + PN  +FND +KALR+HC+RRWNK  A
Sbjct: 383 NLLVKEKIIINDIGGSDREVSQLFNNLCKFVSSSPNDNYFNDTSKALRDHCDRRWNKAKA 442

Query: 121 TLKHNYFNTPWAIVSFHGAIFLL 133
           +LKHNYFNTPWA +S   A FLL
Sbjct: 443 SLKHNYFNTPWAAISVSAATFLL 465

[Close]
BLAST of CmaCh03G001940 vs. NCBI nr
Match: gi|659088842|ref|XP_008445190.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 7.4e-26
Identity = 66/142 (46.48%), Postives = 88/142 (61.97%), Query Frame = 1 

Query: 1   MNMSFKNGVFEIPPILIDYYFETMMQNLIAFEHFYVGNDNKCIQCVITGTFEFTCESRN- 60
           MN+SFKNGV EIPPI+I+  FE +++N++AFE F  GN  K     +T   +     ++ 
Sbjct: 297 MNISFKNGVLEIPPIVIEGTFEVVIRNVLAFEIFPAGNQKKYAIQYVTFLDDLISTEKDL 356

Query: 61  ---------HSQQNCSNIEVLELFNNLYKFVTVPNCCHFNDINKALREHCNRRWNKVIAT 120
                     +    S+ E  ELFN+L K VT P   +F+D +KALR HC+  WNK  A+
Sbjct: 357 CLLVKAGVITNDTGGSDKEASELFNSLTKLVTTPLSSYFDDTSKALRVHCDGSWNKAKAS 416

Query: 121 LKHNYFNTPWAIVSFHGAIFLL 133
           LKHNYFNTPWAI+SF  AIFL+
Sbjct: 417 LKHNYFNTPWAIISFFAAIFLI 438

The following BLAST results are available for this feature:
BLAST of CmaCh03G001940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y3720_ARATH1.0e-0623.24UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1[more]
BLAST of CmaCh03G001940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPJ5_CUCSA9.4e-2847.89Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380630 PE=4 SV=1[more]
A0A0A0LM96_CUCSA1.5e-2547.55Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1[more]
A0A0A0LLX1_CUCSA2.6e-2547.22Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1[more]
A0A0A0LQ57_CUCSA4.4e-2545.77Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1[more]
A0A0A0LSF4_CUCSA5.9e-2246.15Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1[more]
BLAST of CmaCh03G001940 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50170.11.4e-1433.57 Plant protein of unknown function (DUF247)[more]
AT4G31980.16.9e-1429.50 unknown protein[more]
AT3G50150.11.5e-1333.10 Plant protein of unknown function (DUF247)[more]
AT3G50130.13.4e-1332.39 Plant protein of unknown function (DUF247)[more]
AT3G50160.14.5e-1334.01 Plant protein of unknown function (DUF247)[more]
BLAST of CmaCh03G001940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674385|ref|XP_011650198.1|1.4e-2747.89PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus][more]
gi|700207815|gb|KGN62934.1|1.4e-2747.89hypothetical protein Csa_2G380630 [Cucumis sativus][more]
gi|659088828|ref|XP_008445182.1|2.6e-2647.89PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo][more]
gi|659088838|ref|XP_008445188.1|3.3e-2648.25PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo][more]
gi|659088842|ref|XP_008445190.1|7.4e-2646.48PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004158DUF247_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G001940.1CmaCh03G001940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 66..132
score: 4.5E-12coord: 2..39
score: 2.
NoneNo IPR availablePANTHERPTHR31549FAMILY NOT NAMEDcoord: 1..132
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G001940Silver-seed gourdcarcmaB0812
CmaCh03G001940Silver-seed gourdcarcmaB1427
CmaCh03G001940Watermelon (97103) v2cmawmbB692
CmaCh03G001940Wax gourdcmawgoB0793
CmaCh03G001940Cucurbita maxima (Rimu)cmacmaB524
CmaCh03G001940Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G001940Cucurbita moschata (Rifu)cmacmoB655
CmaCh03G001940Cucurbita moschata (Rifu)cmacmoB668
CmaCh03G001940Watermelon (Charleston Gray)cmawcgB593
CmaCh03G001940Watermelon (97103) v1cmawmB642
CmaCh03G001940Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G001940Cucurbita pepo (Zucchini)cmacpeB672
CmaCh03G001940Bottle gourd (USVL1VR-Ls)cmalsiB601