CmaCh03G001920 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G001920
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPlant protein of unknown function (DUF247)
LocationCma_Chr03 : 2860757 .. 2861447 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTCAAAAATGGGGTTTTTGAAATCCCACCTATACTTATTCATGATTACTTTGAAACCATGATGCAAAACCTGATAGCCTTTGAGCATTTTTACGTTGGAAATGACAACAAATGTGTTCAATATGTGTCATTACTAGATCATTTGATATGTACAGAGAAAGATGTGTGTTTACTTGTGAAAGCTAATCATAATCAACGAAATTGGAGGTAGTAATACAGAAGTTTCAGAATTGTTTAATAATCTCTGTAAATTTGTTACAGTCCCATATTGTTACCACTCCAACGATATCAATAAAGCTTTACAAGAACACTGCAATAGACAATGGAACAAGGCGATAGCTACACTCGAACATAACTATTTCAATACGCCATGGGCTATTCTCTCCTTCCTTGGTGCAATCTTCCTCCTTGTTTTGATATTTTCTAATATATCCGTATTTCCTAGCAAGTTAAACCTATCCAAATAATATATGTATGTTTCTTTTTAAGTTTATTTCCTCACTCATCTTACCTGGTTAAATGTTATGTTATATTTGTATTTGTTATCGTACCTATAATTCTTTAATGAACCGTAATCTTATTATTCATTATTTGTCATAGAAAAGCATTTAAGATTGGCACCGGCCAATGAAAATCATAAGGTTATGGTTAAACTTAGTACAACAATCCAATGTCCAAATATTTAA

mRNA sequence

ATGAGATTCAAAAATGGGGTTTTTGAAATCCCACCTATACTTATTCATGATTACTTTGAAACCATGATGCAAAACCTGATAGCCTTTGAGCATTTTTACGTTGGAAATGACAACAAATGTGTTCAATATGTGTCATTACTAGATCATTTGATATGTACAGAGAAAGATCTAATCATAATCAACGAAATTGGAGGTAGTAATACAGAAGTTTCAGAATTGTTTAATAATCTCTGTAAATTTGTTACAGTCCCATATTGTTACCACTCCAACGATATCAATAAAGCTTTACAAGAACACTGCAATAGACAATGGAACAAGGCGATAGCTACACTCGAACATAACTATTTCAATACGCCATGGGCTATTCTCTCCTTCCTTGAAAAGCATTTAAGATTGGCACCGGCCAATGAAAATCATAAGGTTATGGTTAAACTTAGTACAACAATCCAATGTCCAAATATTTAA

Coding sequence (CDS)

ATGAGATTCAAAAATGGGGTTTTTGAAATCCCACCTATACTTATTCATGATTACTTTGAAACCATGATGCAAAACCTGATAGCCTTTGAGCATTTTTACGTTGGAAATGACAACAAATGTGTTCAATATGTGTCATTACTAGATCATTTGATATGTACAGAGAAAGATCTAATCATAATCAACGAAATTGGAGGTAGTAATACAGAAGTTTCAGAATTGTTTAATAATCTCTGTAAATTTGTTACAGTCCCATATTGTTACCACTCCAACGATATCAATAAAGCTTTACAAGAACACTGCAATAGACAATGGAACAAGGCGATAGCTACACTCGAACATAACTATTTCAATACGCCATGGGCTATTCTCTCCTTCCTTGAAAAGCATTTAAGATTGGCACCGGCCAATGAAAATCATAAGGTTATGGTTAAACTTAGTACAACAATCCAATGTCCAAATATTTAA

Protein sequence

MRFKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNKCVQYVSLLDHLICTEKDLIIINEIGGSNTEVSELFNNLCKFVTVPYCYHSNDINKALQEHCNRQWNKAIATLEHNYFNTPWAILSFLEKHLRLAPANENHKVMVKLSTTIQCPNI
Homology
[Close]
BLAST of CmaCh03G001920 vs. TrEMBL
Match: A0A0A0LM96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.8e-36
Identity = 78/134 (58.21%), Postives = 103/134 (76.87%), Query Frame = 1 

Query: 1   MRFKNGVFEIPPILIHDYFETMMQNLIAFEHFYVG-NDNKCVQYVSLLDHLICTEKDL-- 60
           +RF+NG+ EIPP+ I DYFE MM+NL+AFEHF V  N+   + YV+ +D+LI TEKD+  
Sbjct: 289 IRFENGILEIPPLHIDDYFEPMMRNLLAFEHFPVEVNNTYVIPYVTFMDYLISTEKDVNL 348

Query: 61  -----IIINEIGGSNTEVSELFNNLCKFVTV-PYCYHSNDINKALQEHCNRQWNKAIATL 120
                IIIN+IGGS+ EVS+LFNNLCKFV+  P   + N+I++ L+EHC+R WNKA A+L
Sbjct: 349 LVKEKIIINDIGGSDREVSQLFNNLCKFVSSSPNDNYFNNISEGLREHCDRWWNKAKASL 408

Query: 121 EHNYFNTPWAILSF 126
           +HNYFNTPWA +SF
Sbjct: 409 KHNYFNTPWAAISF 422

[Close]
BLAST of CmaCh03G001920 vs. TrEMBL
Match: A0A0A0LLX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.0e-34
Identity = 75/135 (55.56%), Postives = 101/135 (74.81%), Query Frame = 1 

Query: 1   MRFKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNKCV-QYVSLLDHLICTEKDL-- 60
           ++FKNG+ EIPP+ I DYFE MM++L+AFEHF +   N  V  Y++ +D+LI TE D+  
Sbjct: 318 IKFKNGILEIPPLHIDDYFEPMMRDLLAFEHFPIEVQNTYVIPYITFMDYLISTENDVNL 377

Query: 61  -----IIINEIGGSNTEVSELFNNLCKFVTVPYC-YHSNDINKALQEHCNRQWNKAIATL 120
                IIIN+IGGS+ EVS+LFNNLCKFV+  +   + NDI++ L++HC+R WNKA ATL
Sbjct: 378 LVKEKIIINDIGGSDREVSQLFNNLCKFVSSSFNNIYFNDISERLRKHCDRWWNKAKATL 437

Query: 121 EHNYFNTPWAILSFL 127
           +HNY NTPWA +SFL
Sbjct: 438 KHNYCNTPWAFISFL 452

[Close]
BLAST of CmaCh03G001920 vs. TrEMBL
Match: A0A0A0LQ57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32
Identity = 74/131 (56.49%), Postives = 95/131 (72.52%), Query Frame = 1 

Query: 3   FKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNK-CVQYVSLLDHLICTEKDL---- 62
           FKNGV EIPPI+I   FE +++N++AFE F  GN  K  +QYV+ LD LI TEKDL    
Sbjct: 321 FKNGVLEIPPIVIEGTFEVLIRNVLAFEIFPAGNQKKYAIQYVTFLDDLISTEKDLCLLV 380

Query: 63  ---IIINEIGGSNTEVSELFNNLCKFVTVPYCYHSNDINKALQEHCNRQWNKAIATLEHN 122
              +IIN+ GGS+ EVSELFN+L K VT P   + +D +KAL+ HC+  WNKA A+L+H+
Sbjct: 381 KAGVIINDTGGSDKEVSELFNSLTKLVTTPLPSYFDDTSKALRVHCDGSWNKAKASLKHS 440

Query: 123 YFNTPWAILSF 126
           YFNTPWAI+SF
Sbjct: 441 YFNTPWAIISF 451

[Close]
BLAST of CmaCh03G001920 vs. TrEMBL
Match: A0A0A0LPJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380630 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.0e-32
Identity = 69/132 (52.27%), Postives = 97/132 (73.48%), Query Frame = 1 

Query: 3   FKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNK-CVQYVSLLDHLICTEKDL---- 62
           F+NGV +IP + I   FE +++N+IAF+ +  GN N   + YV  LD LI TE+D     
Sbjct: 241 FENGVLKIPCLEIDCTFEIVIRNVIAFDQYPAGNKNAYAIHYVLFLDDLINTEQDAHLLA 300

Query: 63  ---IIINEIGGSNTEVSELFNNLCKFVTVPYCYHSNDINKALQEHCNRQWNKAIATLEHN 122
              +IIN +GGS+ +++E+FNNL K+VT P C H +DI+K L++HCN++WNKAIA+L+HN
Sbjct: 301 NVGVIINTLGGSDKDITEMFNNLSKYVTFPVCSHFDDISKDLRKHCNKRWNKAIASLKHN 360

Query: 123 YFNTPWAILSFL 127
           YFNTPWAI+SFL
Sbjct: 361 YFNTPWAIISFL 372

[Close]
BLAST of CmaCh03G001920 vs. TrEMBL
Match: A0A0A0LSF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.1e-30
Identity = 72/133 (54.14%), Postives = 92/133 (69.17%), Query Frame = 1 

Query: 3   FKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNK-CVQYVSLLDHLICTEKDL---- 62
           F NGV EIPP+ I D FE + +NL+AFE F  GN      QY+  +D+LI T+KD+    
Sbjct: 358 FTNGVLEIPPLNICDEFELLFRNLVAFEQFQAGNGKMYATQYIIFMDNLINTKKDVRLLV 417

Query: 63  ---IIINEIGGSNTEVSELFNNLCKFVT-VPYCYHSNDINKALQEHCNRQWNKAIATLEH 122
              +IIN IGGS  EVS+LFN L KF++  P     NDI+K L +HCNR+WNKA A+L+H
Sbjct: 418 NSGVIINNIGGSYKEVSKLFNKLGKFISGSPTSSEFNDISKDLHKHCNRRWNKAKASLKH 477

Query: 123 NYFNTPWAILSFL 127
           NYFNTPWAI+SF+
Sbjct: 478 NYFNTPWAIVSFI 490

[Close]
BLAST of CmaCh03G001920 vs. TAIR10
Match: AT3G50170.1 (AT3G50170.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-22
Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = 1 

Query: 1   MRFKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNKCVQYVSLLDHLICTEKDLIII 60
           + FKNG  EIP +LIHD  +++  NLIAFE  ++ + N    Y+  +D+LI + +D+  +
Sbjct: 382 IEFKNGYLEIPKLLIHDGTKSLFSNLIAFEQCHIESSNHITSYIIFMDNLINSSEDVSYL 441

Query: 61  NEIG------GSNTEVSELFNNLCKFVTV-PYCYHSNDINKALQEHCNRQWNKAIATLEH 120
           +  G      GS++EV++LFN LC+ V   P   H + ++  +  + NR+WN   ATL H
Sbjct: 442 HYCGIIEHWLGSDSEVADLFNRLCQEVVFDPKDSHLSRLSGDVNRYYNRKWNVLKATLTH 501

Query: 121 NYFNTPWAILSF 126
            YFN PWA  SF
Sbjct: 502 KYFNNPWAYFSF 513

[Close]
BLAST of CmaCh03G001920 vs. TAIR10
Match: AT3G50130.1 (AT3G50130.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-21
Identity = 49/132 (37.12%), Postives = 79/132 (59.85%), Query Frame = 1 

Query: 1   MRFKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNKCVQYVSLLDHLICTEKDLIII 60
           +RFKNG  EIP +LIHD  +++  NLIAFE  ++ + N    Y+  +D+LI + +D+  +
Sbjct: 407 IRFKNGYLEIPKLLIHDGTKSLFSNLIAFEQCHIDSSNDITSYIIFMDNLIDSSEDVRYL 466

Query: 61  NEIG------GSNTEVSELFNNLCKFVTV-PYCYHSNDINKALQEHCNRQWNKAIATLEH 120
           +  G      G++ EV++LFN LC+ V   P   + + ++  +  + +R+WN   A L+H
Sbjct: 467 HYCGIIEHWLGNDYEVADLFNRLCQEVAFDPQNSYLSQLSNKVDRNYSRKWNVLKAILKH 526

Query: 121 NYFNTPWAILSF 126
            YFN PWA  SF
Sbjct: 527 KYFNNPWAYFSF 538

[Close]
BLAST of CmaCh03G001920 vs. TAIR10
Match: AT3G50150.1 (AT3G50150.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-21
Identity = 49/132 (37.12%), Postives = 78/132 (59.09%), Query Frame = 1 

Query: 1   MRFKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNKCVQYVSLLDHLICTEKDLIII 60
           + FKNG  +IP +LIHD  +++  NLIAFE  +  + N    Y+  +D+LI + +D+  +
Sbjct: 352 IEFKNGYLKIPKLLIHDGTKSLFSNLIAFEQCHTQSSNNITSYIIFMDNLINSSQDVSYL 411

Query: 61  NEIG------GSNTEVSELFNNLCKFVTV-PYCYHSNDINKALQEHCNRQWNKAIATLEH 120
           +  G      GS++EV++LFN LCK V   P   + + +++ +  + +R+WN   ATL  
Sbjct: 412 HHDGIIEHWLGSDSEVADLFNRLCKEVIFDPKDGYLSQLSREVNRYYSRKWNSLKATLRQ 471

Query: 121 NYFNTPWAILSF 126
            YFN PWA  SF
Sbjct: 472 KYFNNPWAYFSF 483

[Close]
BLAST of CmaCh03G001920 vs. TAIR10
Match: AT3G50120.1 (AT3G50120.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 98.2 bits (243), Expect = 4.7e-21
Identity = 50/132 (37.88%), Postives = 81/132 (61.36%), Query Frame = 1 

Query: 1   MRFKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNKCVQYVSLLDHLICTEKDLIII 60
           M+FKNG  EIP +LIHD  +++  NLIAFE  ++ + N    Y+  +D+LI + +D+  +
Sbjct: 374 MQFKNGYLEIPRLLIHDGTKSLFLNLIAFEQCHIDSSNDITSYIIFMDNLIDSHEDVSYL 433

Query: 61  NEIG------GSNTEVSELFNNLCKFVTV-PYCYHSNDINKALQEHCNRQWNKAIATLEH 120
           +  G      GS++EV++LFN LC+ V       + + ++  +  + + +WN   ATL+H
Sbjct: 434 HYCGIIEHWLGSDSEVADLFNRLCQEVVFDTEDSYLSRLSIEVNRYYDHKWNAWRATLKH 493

Query: 121 NYFNTPWAILSF 126
            YFN PWAI+SF
Sbjct: 494 KYFNNPWAIVSF 505

[Close]
BLAST of CmaCh03G001920 vs. TAIR10
Match: AT3G50140.1 (AT3G50140.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 95.1 bits (235), Expect = 3.9e-20
Identity = 47/132 (35.61%), Postives = 80/132 (60.61%), Query Frame = 1 

Query: 1   MRFKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNKCVQYVSLLDHLICTEKDL--- 60
           ++FKNG  EIP +LIHD  +++  NLIA+E  ++ + N    Y+  +D+LI + +D+   
Sbjct: 382 IQFKNGCLEIPKLLIHDGTKSLFSNLIAYEQCHIDSTNDITSYIIFMDNLIDSAEDIRYL 441

Query: 61  ---IIINEIGGSNTEVSELFNNLCKFVTVPY-CYHSNDINKALQEHCNRQWNKAIATLEH 120
               II    G+++EV+++FN LC+ V       + ++++  +  + NR+WN   ATL+H
Sbjct: 442 HYYDIIEHWLGNDSEVADVFNRLCQEVAFDLENTYLSELSNKVDRYYNRKWNVLKATLKH 501

Query: 121 NYFNTPWAILSF 126
            YF+ PWA  SF
Sbjct: 502 KYFSNPWAYFSF 513

[Close]
BLAST of CmaCh03G001920 vs. NCBI nr
Match: gi|700207809|gb|KGN62928.1| (hypothetical protein Csa_2G380080 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 78/134 (58.21%), Postives = 103/134 (76.87%), Query Frame = 1 

Query: 1   MRFKNGVFEIPPILIHDYFETMMQNLIAFEHFYVG-NDNKCVQYVSLLDHLICTEKDL-- 60
           +RF+NG+ EIPP+ I DYFE MM+NL+AFEHF V  N+   + YV+ +D+LI TEKD+  
Sbjct: 289 IRFENGILEIPPLHIDDYFEPMMRNLLAFEHFPVEVNNTYVIPYVTFMDYLISTEKDVNL 348

Query: 61  -----IIINEIGGSNTEVSELFNNLCKFVTV-PYCYHSNDINKALQEHCNRQWNKAIATL 120
                IIIN+IGGS+ EVS+LFNNLCKFV+  P   + N+I++ L+EHC+R WNKA A+L
Sbjct: 349 LVKEKIIINDIGGSDREVSQLFNNLCKFVSSSPNDNYFNNISEGLREHCDRWWNKAKASL 408

Query: 121 EHNYFNTPWAILSF 126
           +HNYFNTPWA +SF
Sbjct: 409 KHNYFNTPWAAISF 422

[Close]
BLAST of CmaCh03G001920 vs. NCBI nr
Match: gi|659088838|ref|XP_008445188.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 5.3e-35
Identity = 78/133 (58.65%), Postives = 102/133 (76.69%), Query Frame = 1 

Query: 1   MRFKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNKCV-QYVSLLDHLICTEKDL-- 60
           +RF+NG+ EIPP+ I DYFE MM+NL+AFEHF V   N  V  Y++ +D+LI TEKD+  
Sbjct: 325 IRFENGILEIPPLHIDDYFEPMMRNLLAFEHFPVEVKNTYVIPYLTFMDYLIITEKDVNL 384

Query: 61  -----IIINEIGGSNTEVSELFNNLCKFVTV-PYCYHSNDINKALQEHCNRQWNKAIATL 120
                IIIN+IGGS+ EVS+LFNNLCKFV+  P   + ND +KAL++HC+R+WNKA A+L
Sbjct: 385 LVKEKIIINDIGGSDREVSQLFNNLCKFVSSSPNDNYFNDTSKALRDHCDRRWNKAKASL 444

Query: 121 EHNYFNTPWAILS 125
           +HNYFNTPWA +S
Sbjct: 445 KHNYFNTPWAAIS 457

[Close]
BLAST of CmaCh03G001920 vs. NCBI nr
Match: gi|778674379|ref|XP_011650197.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33
Identity = 75/135 (55.56%), Postives = 101/135 (74.81%), Query Frame = 1 

Query: 1   MRFKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNKCV-QYVSLLDHLICTEKDL-- 60
           ++FKNG+ EIPP+ I DYFE MM++L+AFEHF +   N  V  Y++ +D+LI TE D+  
Sbjct: 318 IKFKNGILEIPPLHIDDYFEPMMRDLLAFEHFPIEVQNTYVIPYITFMDYLISTENDVNL 377

Query: 61  -----IIINEIGGSNTEVSELFNNLCKFVTVPYC-YHSNDINKALQEHCNRQWNKAIATL 120
                IIIN+IGGS+ EVS+LFNNLCKFV+  +   + NDI++ L++HC+R WNKA ATL
Sbjct: 378 LVKEKIIINDIGGSDREVSQLFNNLCKFVSSSFNNIYFNDISERLRKHCDRWWNKAKATL 437

Query: 121 EHNYFNTPWAILSFL 127
           +HNY NTPWA +SFL
Sbjct: 438 KHNYCNTPWAFISFL 452

[Close]
BLAST of CmaCh03G001920 vs. NCBI nr
Match: gi|700207813|gb|KGN62932.1| (hypothetical protein Csa_2G380610 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-32
Identity = 74/131 (56.49%), Postives = 95/131 (72.52%), Query Frame = 1 

Query: 3   FKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNK-CVQYVSLLDHLICTEKDL---- 62
           FKNGV EIPPI+I   FE +++N++AFE F  GN  K  +QYV+ LD LI TEKDL    
Sbjct: 321 FKNGVLEIPPIVIEGTFEVLIRNVLAFEIFPAGNQKKYAIQYVTFLDDLISTEKDLCLLV 380

Query: 63  ---IIINEIGGSNTEVSELFNNLCKFVTVPYCYHSNDINKALQEHCNRQWNKAIATLEHN 122
              +IIN+ GGS+ EVSELFN+L K VT P   + +D +KAL+ HC+  WNKA A+L+H+
Sbjct: 381 KAGVIINDTGGSDKEVSELFNSLTKLVTTPLPSYFDDTSKALRVHCDGSWNKAKASLKHS 440

Query: 123 YFNTPWAILSF 126
           YFNTPWAI+SF
Sbjct: 441 YFNTPWAIISF 451

[Close]
BLAST of CmaCh03G001920 vs. NCBI nr
Match: gi|778674382|ref|XP_004138863.2| (PREDICTED: UPF0481 protein At3g47200, partial [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-32
Identity = 74/131 (56.49%), Postives = 95/131 (72.52%), Query Frame = 1 

Query: 3   FKNGVFEIPPILIHDYFETMMQNLIAFEHFYVGNDNK-CVQYVSLLDHLICTEKDL---- 62
           FKNGV EIPPI+I   FE +++N++AFE F  GN  K  +QYV+ LD LI TEKDL    
Sbjct: 369 FKNGVLEIPPIVIEGTFEVLIRNVLAFEIFPAGNQKKYAIQYVTFLDDLISTEKDLCLLV 428

Query: 63  ---IIINEIGGSNTEVSELFNNLCKFVTVPYCYHSNDINKALQEHCNRQWNKAIATLEHN 122
              +IIN+ GGS+ EVSELFN+L K VT P   + +D +KAL+ HC+  WNKA A+L+H+
Sbjct: 429 KAGVIINDTGGSDKEVSELFNSLTKLVTTPLPSYFDDTSKALRVHCDGSWNKAKASLKHS 488

Query: 123 YFNTPWAILSF 126
           YFNTPWAI+SF
Sbjct: 489 YFNTPWAIISF 499

The following BLAST results are available for this feature:
BLAST of CmaCh03G001920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh03G001920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM96_CUCSA9.8e-3658.21Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1[more]
A0A0A0LLX1_CUCSA7.0e-3455.56Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1[more]
A0A0A0LQ57_CUCSA1.0e-3256.49Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380610 PE=4 SV=1[more]
A0A0A0LPJ5_CUCSA5.0e-3252.27Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380630 PE=4 SV=1[more]
A0A0A0LSF4_CUCSA2.1e-3054.14Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1[more]
BLAST of CmaCh03G001920 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50170.11.1e-2239.39 Plant protein of unknown function (DUF247)[more]
AT3G50130.12.1e-2137.12 Plant protein of unknown function (DUF247)[more]
AT3G50150.13.6e-2137.12 Plant protein of unknown function (DUF247)[more]
AT3G50120.14.7e-2137.88 Plant protein of unknown function (DUF247)[more]
AT3G50140.13.9e-2035.61 Plant protein of unknown function (DUF247)[more]
BLAST of CmaCh03G001920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207809|gb|KGN62928.1|1.4e-3558.21hypothetical protein Csa_2G380080 [Cucumis sativus][more]
gi|659088838|ref|XP_008445188.1|5.3e-3558.65PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo][more]
gi|778674379|ref|XP_011650197.1|1.0e-3355.56PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus][more]
gi|700207813|gb|KGN62932.1|1.5e-3256.49hypothetical protein Csa_2G380610 [Cucumis sativus][more]
gi|778674382|ref|XP_004138863.2|1.5e-3256.49PREDICTED: UPF0481 protein At3g47200, partial [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004158DUF247_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G001920.1CmaCh03G001920.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 1..126
score: 2.3
NoneNo IPR availablePANTHERPTHR31549FAMILY NOT NAMEDcoord: 1..126
score: 6.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh03G001920CmoCh03G001750Cucurbita moschata (Rifu)cmacmoB655
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G001920Watermelon (Charleston Gray)cmawcgB593
CmaCh03G001920Watermelon (97103) v1cmawmB642
CmaCh03G001920Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G001920Cucurbita pepo (Zucchini)cmacpeB672
CmaCh03G001920Bottle gourd (USVL1VR-Ls)cmalsiB601
CmaCh03G001920Silver-seed gourdcarcmaB0812
CmaCh03G001920Silver-seed gourdcarcmaB1427
CmaCh03G001920Watermelon (97103) v2cmawmbB692
CmaCh03G001920Wax gourdcmawgoB0793
CmaCh03G001920Cucurbita maxima (Rimu)cmacmaB524
CmaCh03G001920Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G001920Cucurbita moschata (Rifu)cmacmoB668