CmaCh03G000840 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G000840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cma_Chr03 : 845327 .. 849648 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCATCATCATCATCATCATCATCATCACTCACTTCCACATGCTTCGAAGAAACGCCTGAACCTTTGGATTCCGGGCATGCTGCGCCAATTTGATCAATCCCGAGATGAATGTTTCATTCTCTCTTCTTCCTTCTTACAATCTCGGAATCTGCGCTTCTTTCCGCTGGTGATTCACTGCTGAGTTCACTCCATTTCCTTTCTTCTCTGTTGATTTCTCCTTTTTCTGTTTTTCCTTATCATCTGCTTCTTTTTTCGCCTTTCTCTGTTTGCCTTTTTGACTTTGGACATTGCAGGGCAACTTAGATGCTGTGCTGCTGCGTTCCTCAACAACTGTAGCGGTTCGGCTTTTGTTTTGAAGGTTAATGGCTTGTACGTGCTCGCTAGATTTCAGTAGCTACTTTTGCTTTTCTTTCCCTTTCGCAGCTTTATTCTTGTTTTACTTTTTCTCTGTGTGTATCTTTCACTGCTCTAGATGTGGTTTTTCGATTTGTTTTTAATGAGTTTTGAGTTCGCTTTGGGAGTGTGGATGTTCTTACTCTTTGATGAATCGAGCGTTTCTGTTATGCAATGTGAGATGTTTTTTCGTTAAAATTTTTGGAAATCTCTCTATCTCAATGCTGTTTTGTTGTTTTGTTGTTTTGTTCTTGCCGGCGTGCCAGAGACCAGATTTGGGAGTTCGATCTTTGTATAACTAAGTTTTCCAAGGAGCTTGGGGCTAGAAAGTATGTGATTCCTTCTATAATTGCTGTAACTCTGAATCTATTTGTTCCTTTTGGAATAAATTGAAGTCGATTGCTGGTAAGTCGATGGGGATTGAGTGTTTAATTCCTGTAATCCTGAATTGAAGTCGGCTGCTACCATTTATGACTTTGAGATTAGGATGGATTTAGTACTTTATGTTAGATAAAACCTGAGTTTTACCGTTTTTCTTATTCACACGATTTCAGAAAATCGTGAGTTTGACCATTTGACAAATCACGTCGAATGGATCACCAGAGTTTTAGAAGGGAGTGGCACAGATTTAGTTGGCCACTCTCCAGCCAATTTTAGAATTCCTTTTTACTTTAAATAGGAGAATTGTTCAGAAAACAAAACAACCTCAACGCAGTCAAATTCAGAGTTATTTTTTCTCTCTCCTTTTTGTTACGCATTTTCCCAATTTCCTCTCACCGAAATTCTGTGAAAACCAACAAGTGGTATCAGAGCCAAGTTGAAGATCGGTGTATATCATTGCAGAGGAGCCAACCTATCAACAAACAAGTTGAATAGCTCAAGTGGTTAGAGCTTTGACCTAACATCACTAAGGTCTCAGGTTCGAGTACAAGAAAATGCGAAGTGTAAAAACACACACATCGTGGGGCCCATCTCGGGCAGGCTCACTCACTCCTCCACGCCGTCGTCGTGTGCCGACATCTCCATCACCGCCGCCACGAAGAGGGCGTCAAGTTATCGTTGAGCGAGTGATCAGGGAGACAACGACTGCCGTCGTTCAGTATCCAATATTGACAAAGTCCAATTATAACGAATGGATCTTGTTGATGCGCGTCAACCTACAGGCACAAGGGTTATGGCATGCTACGATCTGTGCCCCCAGAGATGCTGGCATCTCTCTCCACCAAGCGCACCGCGCAATCGGCCTGGGAGGGAATCAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATCGAGCAGTTGCGGAAGGAGCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACAAGGGGGGTCGTCTACTCCTCACTGAGGAGGAATGGCTTGCACGTCTAAAGCTCCGTGACAACACCCGCGAGAGCAACGGGTCCTCCTCCAGCCGCAAAGACGGTAAGAAACCATGGATCTCCCACGGGCGCATGCGCGGGAAAGATGTGAATCAAAAGAAGGAGTCGACCAATGGCAGGCCAATCTGCTCGAACTGTGGGAAGAGAGGACACCTAAGCAGGAATTGCTGGAGCAAGCTTAGGAACAAGGAGAAGGCCGAAAAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCAGCTCTCTTCATGGTAAGTGCATGTGTCCCCACTATCGATTCCAAATCCACGGAAATGGAGGTAATCAACAACGATGTTGAACTCGAGAAAGAGCTCCAGCTGGGCGTAGCAAAGGTTGCACCAGCTAGGGAGCCAATTCAACTGGAGGAGGAGCGAGTGTTCGCTCAGATCAGCGAGCGGGACGAGCAACACAAGGACCGGCGATGGATCCTAGACACAGGGGCAACAAACCATATGACCGGGGCTAGATCTGCATTCTCCGAACTCGACTCGGGGATCCGCGGGACGGTGAAATTCGGCGACGGATCCGTCGTAGAGATCGAAGGACGCGGCACCATCCTGTTCGCCAGCAAGGGAGGCGAGCATCGCAAGCTGACCGACGTCTACTTCATCCCGAGGCTCAAGGCTAACCTTGTGAGCCTGGGTCAACTCGATGAGACAGGCTGTTTCATCTCCATCGAGCGCGGACTACTTAAAATTTGCGATAATCAACGACGGCTGCTCACACAGGCAAGACGCACGACAAACCGTCTTTACATCCTGGAGTTAGAGATAGAGCAACCTGTCAGTCTCTCGGCCAAGATCGAAGAGGTATCTTGGAGGTGGCACGCAAGGTACGGGCATTTAAACTTTCCTGCTCTAGAAAAACTACAGAAGGAGGAGTTAGTGCACGGTTTGCCAGCAATCAAATGCGTGAACAAGCTGTGCGACGGGTGCCTCATCGGCAAACAGAGGCGCACACCCTTTCCGTCTCGAACATCCTATCGAGCCGATGAGCCGTTGGAGCTTGTACATGGCGATATCTGCGGGCCCATCAAGCCGGCGACCCCAGGCGGTAAGAGTCTCTTCCTCCTGTTGGTCGATGACAAAAGCCGCTTCATGTGGCTGACCCTGCTGCAAGCGAAAAGTGAGGCGGCAGAGGCGGTTAAGTGCATTAAAGCGCGAGCGGAGGCCGAATGTGAGAAGAACGAAAAGTGA

mRNA sequence

CATCATCATCATCATCATCATCATCATCACTCACTTCCACATGCTTCGAAGAAACGCCTGAACCTTTGGATTCCGGGCATGCTGCGCCAATTTGATCAATCCCGAGATGAATGTTTCATTCTCTCTTCTTCCTTCTTACAATCTCGGAATCTGCGCTTCTTTCCGCTGGGCAACTTAGATGCTGTGCTGCTGCGTTCCTCAACAACTGTAGCGGTTCGGCTTTTGTTTTGAAGGTTAATGGCTTAGACCAGATTTGGGAGTTCGATCTTTGTATAACTAAGTTTTCCAAGGAGCTTGGGGCTAGAAAGTTCGAGTACAAGAAAATGCGAAGTGTAAAAACACACACATCGTGGGGCCCATCTCGGGCAGGCTCACTCACTCCTCCACGCCGTCGTCGTGTGCCGACATCTCCATCACCGCCGCCACGAAGAGGGCGTCAAGTTATCGTTGAGCGAGTGATCAGGGAGACAACGACTGCCGTCGTTCAGTATCCAATATTGACAAAGTCCAATTATAACGAATGGATCTTGTTGATGCGCGTCAACCTACAGGCACAAGGGTTATGGCATGCTACGATCTGTGCCCCCAGAGATGCTGGCATCTCTCTCCACCAAGCGCACCGCGCAATCGGCCTGGGAGGGAATCAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATCGAGCAGGGGGTCGTCTACTCCTCACTGAGGAGGAATGGCTTGCACGTCTAAAGCTCCGTGACAACACCCGCGAGAGCAACGGGTCCTCCTCCAGCCGCAAAGACGGTAAGAAACCATGGATCTCCCACGGGCGCATGCGCGGGAAAGATGTGAATCAAAAGAAGGAGTCGACCAATGGCAGGCCAATCTGCTCGAACTGTGGGAAGAGAGGACACCTAAGCAGGAATTGCTGGAGCAAGCTTAGGAACAAGGAGAAGGCCGAAAAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCAGCTCTCTTCATGGTAAGTGCATGTGTCCCCACTATCGATTCCAAATCCACGGAAATGGAGGTAATCAACAACGATGTTGAACTCGAGAAAGAGCTCCAGCTGGGCGTAGCAAAGGTTGCACCAGCTAGGGAGCCAATTCAACTGGAGGAGGAGCGAGTGTTCGCTCAGATCAGCGAGCGGGACGAGCAACACAAGGACCGGCGATGGATCCTAGACACAGGGGCAACAAACCATATGACCGGGGCTAGATCTGCATTCTCCGAACTCGACTCGGGGATCCGCGGGACGGTGAAATTCGGCGACGGATCCGTCGTAGAGATCGAAGGACGCGGCACCATCCTGTTCGCCAGCAAGGGAGGCGAGCATCGCAAGCTGACCGACGTCTACTTCATCCCGAGGCTCAAGGCTAACCTTGTGAGCCTGGGTCAACTCGATGAGACAGGCTGTTTCATCTCCATCGAGCGCGGACTACTTAAAATTTGCGATAATCAACGACGGCTGCTCACACAGGCAAGACGCACGACAAACCGTCTTTACATCCTGGAGTTAGAGATAGAGCAACCTGTCAGTCTCTCGGCCAAGATCGAAGAGGTATCTTGGAGGTGGCACGCAAGGTACGGGCATTTAAACTTTCCTGCTCTAGAAAAACTACAGAAGGAGGAGTTAGTGCACGGTTTGCCAGCAATCAAATGCGTGAACAAGCTGTGCGACGGGTGCCTCATCGGCAAACAGAGGCGCACACCCTTTCCGTCTCGAACATCCTATCGAGCCGATGAGCCGTTGGAGCTTGTACATGGCGATATCTGCGGGCCCATCAAGCCGGCGACCCCAGGCGGTAAGAGTCTCTTCCTCCTGTTGGTCGATGACAAAAGCCGCTTCATGTGGCTGACCCTGCTGCAAGCGAAAAGTGAGGCGGCAGAGGCGGTTAAGTGCATTAAAGCGCGAGCGGAGGCCGAATGTGAGAAGAACGAAAAGTGA

Coding sequence (CDS)

ATGTTTCATTCTCTCTTCTTCCTTCTTACAATCTCGGAATCTGCGCTTCTTTCCGCTGGGCAACTTAGATGCTGTGCTGCTGCGTTCCTCAACAACTGTAGCGGTTCGGCTTTTGTTTTGAAGGTTAATGGCTTAGACCAGATTTGGGAGTTCGATCTTTGTATAACTAAGTTTTCCAAGGAGCTTGGGGCTAGAAAGTTCGAGTACAAGAAAATGCGAAGTGTAAAAACACACACATCGTGGGGCCCATCTCGGGCAGGCTCACTCACTCCTCCACGCCGTCGTCGTGTGCCGACATCTCCATCACCGCCGCCACGAAGAGGGCGTCAAGTTATCGTTGAGCGAGTGATCAGGGAGACAACGACTGCCGTCGTTCAGTATCCAATATTGACAAAGTCCAATTATAACGAATGGATCTTGTTGATGCGCGTCAACCTACAGGCACAAGGGTTATGGCATGCTACGATCTGTGCCCCCAGAGATGCTGGCATCTCTCTCCACCAAGCGCACCGCGCAATCGGCCTGGGAGGGAATCAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATCGAGCAGGGGGTCGTCTACTCCTCACTGAGGAGGAATGGCTTGCACGTCTAAAGCTCCGTGACAACACCCGCGAGAGCAACGGGTCCTCCTCCAGCCGCAAAGACGGTAAGAAACCATGGATCTCCCACGGGCGCATGCGCGGGAAAGATGTGAATCAAAAGAAGGAGTCGACCAATGGCAGGCCAATCTGCTCGAACTGTGGGAAGAGAGGACACCTAAGCAGGAATTGCTGGAGCAAGCTTAGGAACAAGGAGAAGGCCGAAAAGGCCCATGTGGCTCAATCCGAGGAGGACGAGCCAGCTCTCTTCATGGTAAGTGCATGTGTCCCCACTATCGATTCCAAATCCACGGAAATGGAGGTAATCAACAACGATGTTGAACTCGAGAAAGAGCTCCAGCTGGGCGTAGCAAAGGTTGCACCAGCTAGGGAGCCAATTCAACTGGAGGAGGAGCGAGTGTTCGCTCAGATCAGCGAGCGGGACGAGCAACACAAGGACCGGCGATGGATCCTAGACACAGGGGCAACAAACCATATGACCGGGGCTAGATCTGCATTCTCCGAACTCGACTCGGGGATCCGCGGGACGGTGAAATTCGGCGACGGATCCGTCGTAGAGATCGAAGGACGCGGCACCATCCTGTTCGCCAGCAAGGGAGGCGAGCATCGCAAGCTGACCGACGTCTACTTCATCCCGAGGCTCAAGGCTAACCTTGTGAGCCTGGGTCAACTCGATGAGACAGGCTGTTTCATCTCCATCGAGCGCGGACTACTTAAAATTTGCGATAATCAACGACGGCTGCTCACACAGGCAAGACGCACGACAAACCGTCTTTACATCCTGGAGTTAGAGATAGAGCAACCTGTCAGTCTCTCGGCCAAGATCGAAGAGGTATCTTGGAGGTGGCACGCAAGGTACGGGCATTTAAACTTTCCTGCTCTAGAAAAACTACAGAAGGAGGAGTTAGTGCACGGTTTGCCAGCAATCAAATGCGTGAACAAGCTGTGCGACGGGTGCCTCATCGGCAAACAGAGGCGCACACCCTTTCCGTCTCGAACATCCTATCGAGCCGATGAGCCGTTGGAGCTTGTACATGGCGATATCTGCGGGCCCATCAAGCCGGCGACCCCAGGCGGTAAGAGTCTCTTCCTCCTGTTGGTCGATGACAAAAGCCGCTTCATGTGGCTGACCCTGCTGCAAGCGAAAAGTGAGGCGGCAGAGGCGGTTAAGTGCATTAAAGCGCGAGCGGAGGCCGAATGTGAGAAGAACGAAAAGTGA

Protein sequence

MFHSLFFLLTISESALLSAGQLRCCAAAFLNNCSGSAFVLKVNGLDQIWEFDLCITKFSKELGARKFEYKKMRSVKTHTSWGPSRAGSLTPPRRRRVPTSPSPPPRRGRQVIVERVIRETTTAVVQYPILTKSNYNEWILLMRVNLQAQGLWHATICAPRDAGISLHQAHRAIGLGGNQIPSGRCTASAGIQHRAGGRLLLTEEEWLARLKLRDNTRESNGSSSSRKDGKKPWISHGRMRGKDVNQKKESTNGRPICSNCGKRGHLSRNCWSKLRNKEKAEKAHVAQSEEDEPALFMVSACVPTIDSKSTEMEVINNDVELEKELQLGVAKVAPAREPIQLEEERVFAQISERDEQHKDRRWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEHRKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEIEQPVSLSAKIEEVSWRWHARYGHLNFPALEKLQKEELVHGLPAIKCVNKLCDGCLIGKQRRTPFPSRTSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKCIKARAEAECEKNEK

Homology

[Close]

BLAST of CmaCh03G000840 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 8.2e-26
Identity = 84/261 (32.18%), Postives = 125/261 (47.89%), Query Frame = 1


Query: 359 DRRWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEHRKL 418
           +  W++DT A++H T  R  F    +G  GTVK G+ S  +I G G I   +  G    L
Sbjct: 291 ESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVL 350

Query: 419 TDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEI 478
            DV  +P L+ NL+S   LD  G          ++      +     R T  LY    EI
Sbjct: 351 KDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGT--LYRTNAEI 410

Query: 479 EQPVSLSAKIEEVSWR-WHARYGHLNFPALEKLQKEELVHGLPAIKCVNKLCDGCLIGKQ 538
            Q   L+A  +E+S   WH R GH++   L+ L K+ L+          K CD CL GKQ
Sbjct: 411 CQG-ELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTV--KPCDYCLFGKQ 470

Query: 539 RRTPFPSRTSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSE 598
            R  F + +S R    L+LV+ D+CGP++  + GG   F+  +DD SR +W+ +L+ K +
Sbjct: 471 HRVSFQT-SSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQ 530

Query: 599 AAEAVKCIKARAEAECEKNEK 619
             +  +   A  E E  +  K
Sbjct: 531 VFQVFQKFHALVERETGRKLK 545

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BLAST of CmaCh03G000840 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-19
Identity = 67/261 (25.67%), Postives = 127/261 (48.66%), Query Frame = 1


Query: 362 WILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEHR----- 421
           ++LD+GA++H+    S +++       +V+      + +  +G  ++A+K G  R     
Sbjct: 289 FVLDSGASDHLINDESLYTD-------SVEVVPPLKIAVAKQGEFIYATKRGIVRLRNDH 348

Query: 422 --KLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYIL 481
              L DV F      NL+S+ +L E G  I  ++  + I  N   ++  +    N + ++
Sbjct: 349 EITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKNSGMLNN-VPVI 408

Query: 482 ELEIEQPVSLSAKIEEVSWRWHARYGHLNFPALEKLQKEELVHG---LPAIKCVNKLCDG 541
                Q  S++AK +     WH R+GH++   L +++++ +      L  ++   ++C+ 
Sbjct: 409 NF---QAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEP 468

Query: 542 CLIGKQRRTPFPS-RTSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLT 601
           CL GKQ R PF   +       PL +VH D+CGPI P T   K+ F++ VD  + +    
Sbjct: 469 CLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTY 528

Query: 602 LLQAKSEAAEAVKCIKARAEA 612
           L++ KS+     +   A++EA
Sbjct: 529 LIKYKSDVFSMFQDFVAKSEA 538

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BLAST of CmaCh03G000840 vs. TrEMBL
Match: Q7XPB1_ORYSJ (OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=4 SV=2)

HSP 1 Score: 396.7 bits (1018), Expect = 5.0e-107
Identity = 214/437 (48.97%), Postives = 291/437 (66.59%), Query Frame = 1


Query: 186 TASAGIQHRAGGRLLLTEEEWLARLKLRDNTRESNGSSSSRKDGKKPWISHGRMRGKDVN 245
           TA+A  +  A GRLL TEEEWLA+ +   + +++  SSS   D +      GR RGK  +
Sbjct: 229 TAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSSGNGDRR------GRGRGKKDD 288

Query: 246 QKKESTNGRPI---------CSNCGKRGHLSRNCWSKLRNKEKAEKAHVAQSEEDEPALF 305
              +    +P          C NCGKRGH +++C    R+K KA++A+VAQ E++EPAL 
Sbjct: 289 GAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDEEPALL 348

Query: 306 MVSACVPTIDSKSTEMEVINNDVELEKELQLGVAKVAPAR-EPIQLEEERVFAQISERDE 365
           +       +D     +    N V          A  AP+    + + E +VFAQ+ +  E
Sbjct: 349 LAKV---QLDPPRPRVAAPTNVVSPPS------APRAPSPIGELAVVEAKVFAQLDDGGE 408

Query: 366 QHKDRRWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEH 425
            H    WILDTGATNHMTG+RSAF+ELD+ + GTV+FGDGSVV IEGR T+LF+ + GEH
Sbjct: 409 -HDPAMWILDTGATNHMTGSRSAFAELDTAVTGTVRFGDGSVVRIEGRVTVLFSCRFGEH 468

Query: 426 RKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILE 485
           R +  VY+IPRL AN+VSLGQLD +G  + I  G+L + D +  LL + RR+ + LY ++
Sbjct: 469 RGIAGVYYIPRLTANIVSLGQLDRSGSKVLIHHGILHVWDPRGHLLVRVRRSDDCLYTIK 528

Query: 486 LEIEQPVSLSAKIEEVSWRWHARYGHLNFPALEKLQKEELVHGLPAIKCVNKLCDGCLIG 545
           L+I++PV L+A+  E +WRWHARYGHLNFPAL KL ++E+V GLP ++ V ++CDGCL+G
Sbjct: 529 LDIDRPVCLAARSAEPAWRWHARYGHLNFPALRKLAQQEMVRGLPLLQQVTQVCDGCLLG 588

Query: 546 KQRRTPFPSRTSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAK 605
           KQRR  FP+++ YRADE LELVHGD+CGPI+PATP G   FLLLVDD SR+MWLT++++K
Sbjct: 589 KQRRAAFPTQSKYRADEHLELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWLTMIRSK 645

Query: 606 SEAAEAVKCIKARAEAE 613
            EAA A+K  +ARAE E
Sbjct: 649 DEAANAIKHFQARAEVE 645

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BLAST of CmaCh03G000840 vs. TrEMBL
Match: A0B9X7_ORYSA (OSIGBa0135C09.3 protein OS=Oryza sativa GN=OSIGBa0135C09.3 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 4.3e-106
Identity = 211/437 (48.28%), Postives = 290/437 (66.36%), Query Frame = 1


Query: 186 TASAGIQHRAGGRLLLTEEEWLARLKLRDNTRESNGSSSSRKDGKKPWISHGRMRGKDVN 245
           TA+A  +  A GRLL TEEEWLA+ +   + +++  SS    D +      GR RGK  +
Sbjct: 162 TAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGGNGDRQ------GRGRGKKDD 221

Query: 246 QKKESTNGRPI---------CSNCGKRGHLSRNCWSKLRNKEKAEKAHVAQSEEDEPALF 305
              +    +P          C NCGKRGH +++C    R+K KA++A+VAQ E++EPAL 
Sbjct: 222 GAPKEAQSKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDEEPALL 281

Query: 306 MVSACVPTIDSKSTEMEVINNDVELEKELQLGVAKVAPA-REPIQLEEERVFAQISERDE 365
           +       +D     +    N V          A  AP+    + + E +VFAQ+ +  E
Sbjct: 282 LAKV---QLDPPRPRVAAPTNVVSPPS------APRAPSPMGELAVVEAKVFAQLDDGGE 341

Query: 366 QHKDRRWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEH 425
            H    WILDTGATNHMTG+RSAF++LD+ + GTV+FGDGSVV IEGRGT+LF+ + GEH
Sbjct: 342 -HDPAMWILDTGATNHMTGSRSAFAKLDTAVTGTVRFGDGSVVRIEGRGTVLFSCRFGEH 401

Query: 426 RKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILE 485
           R +  VY+IPRL AN+VSLGQLD +G  + I  G+L++ D +  LL + RR+ + LY ++
Sbjct: 402 RGIAGVYYIPRLTANIVSLGQLDRSGSKVLIHHGVLRVWDPRGHLLVRVRRSDDCLYTIK 461

Query: 486 LEIEQPVSLSAKIEEVSWRWHARYGHLNFPALEKLQKEELVHGLPAIKCVNKLCDGCLIG 545
           L I++PV L+A+  + +WRWHARYGHLNFP+L KL ++E+V GLP ++ V ++CDGCL+G
Sbjct: 462 LNIDRPVYLAARSAKPAWRWHARYGHLNFPSLRKLAQQEMVRGLPLLQQVTQVCDGCLLG 521

Query: 546 KQRRTPFPSRTSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAK 605
           KQRR  FP+++ YRADE LELVHGD+CGPI+PATP G   FLLLVDD SR+MWLTL+++K
Sbjct: 522 KQRRAAFPTQSKYRADEHLELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWLTLIRSK 578

Query: 606 SEAAEAVKCIKARAEAE 613
            EAA A+K  +A AE E
Sbjct: 582 DEAANAIKHFQAHAEVE 578

[Close]

BLAST of CmaCh03G000840 vs. TrEMBL
Match: Q0J5Y3_ORYSJ (Os08g0389500 protein OS=Oryza sativa subsp. japonica GN=Os08g0389500 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 5.8e-103
Identity = 222/449 (49.44%), Postives = 282/449 (62.81%), Query Frame = 1


Query: 182 SGRCTASAGIQHRAG------GRLLLTEEEWLARLKLRDNTRESNGSSSSRKDG-KKPWI 241
           +GR  A    +HR+       GRLLLT+EEW+A+LK    + E    S S   G K+   
Sbjct: 217 TGRLRAVEQRRHRSAPVVNNQGRLLLTQEEWMAKLKNPGASGEKGTPSGSGGGGNKRTGG 276

Query: 242 SHGRMRGKD-----------VNQKKESTNGRPICSNCGKRGHLSRNCWSKLRNKEKAEKA 301
           S    RGK             NQ K++      C  CGK+GH ++ C S+LR     ++A
Sbjct: 277 SRRHDRGKGGSRQAAGPGDGSNQPKKTDK----CRYCGKKGHWAKECRSRLR-----DEA 336

Query: 302 HVAQSEEDEPALFMVSACVPTIDSKSTEMEVINNDVELEKELQLGVAKVAPAREPIQLEE 361
           H+AQ EE+E  + MV+       S S+     +                 PA E I L+E
Sbjct: 337 HLAQGEEEEEPMLMVATAQVNAISSSSPPRFTS----------------LPALEQIHLDE 396

Query: 362 ERVFAQISERDEQHKDRRWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGR 421
            ++F Q+   +   +  RWILDTGATNHMTG RSAFSEL++GIRGTVKFGDGSVV IEGR
Sbjct: 397 SKLFVQLGG-EHGGEATRWILDTGATNHMTGTRSAFSELNTGIRGTVKFGDGSVVGIEGR 456

Query: 422 GTILFASKGGEHRKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQ 481
           GT+LF  K GEH+ L  VY IPRL  N+VSLGQLDE     S E G+LKI + QRRLL +
Sbjct: 457 GTVLFKCKDGEHQALEGVYHIPRLTTNIVSLGQLDEEKFKWSCEDGVLKIWNKQRRLLAK 516

Query: 482 ARRTTNRLYILELEIEQPVSLSAKIEEVSWRWHARYGHLNFPALEKLQKEELVHGLPAIK 541
             R+ NRLY+++L I +PV L+A+  +++WRWHAR+GHLNF ALEKL +  +V GLP I 
Sbjct: 517 VVRSPNRLYVVKLNIGRPVCLAAQGGDIAWRWHARFGHLNFRALEKLGRAVMVRGLPLIN 576

Query: 542 CVNKLCDGCLIGKQRRTPFPSRTSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDK 601
            V+++CD CL+GKQRR PFPS+  YRA E LELVHGDICGP+ PATP G  LFLLLVDD 
Sbjct: 577 HVDQVCDSCLVGKQRRLPFPSKAKYRAKEKLELVHGDICGPVTPATPSGNKLFLLLVDDL 636

Query: 602 SRFMWLTLLQAKSEAAEAVKCIKARAEAE 613
           SR+MWL LL +K +A+ A+K   A AEAE
Sbjct: 637 SRYMWLILLSSKDQASVAIKRFLACAEAE 639

[Close]

BLAST of CmaCh03G000840 vs. TrEMBL
Match: Q0IXJ3_ORYSJ (Os10g0429700 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os10g0429700 PE=4 SV=2)

HSP 1 Score: 375.2 bits (962), Expect = 1.6e-100
Identity = 202/425 (47.53%), Postives = 272/425 (64.00%), Query Frame = 1


Query: 193 HRAGGRLLLTEEEWLARLKLRDNTRESNGSSSSRKDGKKPWISHGRMR-GKDVNQKKEST 252
           H A G+L LTEEEW  R K +D   +   S SS   GK+     GR R G       EST
Sbjct: 226 HTADGKLYLTEEEWAERQKKKDQEAKRGDSGSSGGRGKR---RGGRGRTGGGGTASPEST 285

Query: 253 NGRPI-----CSNCGKRGHLSRNCWSKLRNKEKAEKAHVAQSEEDEPALFMVSA-CVPTI 312
           N         C NCGK GH +++C SK    ++ E+AHVAQ +E+E  L +++  CV T+
Sbjct: 286 NSGSARKGDKCRNCGKLGHWAKDCRSK---SKREEQAHVAQEDEEEHTLMLLTGGCVDTV 345

Query: 313 DSKSTEMEVINNDVELEKELQLGVAKVAPAREPIQLEEERVFAQISERDEQHKDRRWILD 372
           D+ + E                G     P +  ++L E +VFA + +  + H   RWI+D
Sbjct: 346 DAAAPE----------------GDTPTPPHQAVVELVEMKVFAALDDAAD-HDPGRWIMD 405

Query: 373 TGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEHRKLTDVYFIP 432
           +GA+NHMTG+R AF++LD+ I G V+ GDGSVV I GRGTILFA K GEHR L++ Y++P
Sbjct: 406 SGASNHMTGSRMAFADLDTNITGNVRLGDGSVVRIAGRGTILFACKNGEHRTLSNTYYLP 465

Query: 433 RLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEIEQPVSLS 492
           RL AN++S+GQLDETG  +  E G++++ D QRRLL +  RT  RLY+L++ + +PV L+
Sbjct: 466 RLTANIISIGQLDETGFKVLAEDGIMRVWDEQRRLLARIPRTPGRLYMLDINLARPVCLA 525

Query: 493 AKIEEVSWRWHARYGHLNFPALEKLQKEELVHGLPAIKCVNKLCDGCLIGKQRRTPFPSR 552
           A  +E +WRWHAR GH+NF AL K+ KEELV GLP +  V+++C+ CL GK RR+PFP +
Sbjct: 526 AHADEDAWRWHARLGHINFRALCKMGKEELVRGLPCLSQVDQVCEACLAGKHRRSPFPRQ 585

Query: 553 TSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKCI 611
              R+DEPL L+HGD+CGPI PATP G   FLLLVDD SR+MW+ LL  K  A  A+K I
Sbjct: 586 ALCRSDEPLALLHGDLCGPITPATPSGNRYFLLLVDDYSRYMWVALLSTKDAAPAAIKRI 627

[Close]

BLAST of CmaCh03G000840 vs. TrEMBL
Match: Q7XEA3_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g29420 PE=4 SV=2)

HSP 1 Score: 375.2 bits (962), Expect = 1.6e-100
Identity = 202/425 (47.53%), Postives = 272/425 (64.00%), Query Frame = 1


Query: 193 HRAGGRLLLTEEEWLARLKLRDNTRESNGSSSSRKDGKKPWISHGRMR-GKDVNQKKEST 252
           H A G+L LTEEEW  R K +D   +   S SS   GK+     GR R G       EST
Sbjct: 422 HTADGKLYLTEEEWAERQKKKDQEAKRGDSGSSGGRGKR---RGGRGRTGGGGTASPEST 481

Query: 253 NGRPI-----CSNCGKRGHLSRNCWSKLRNKEKAEKAHVAQSEEDEPALFMVSA-CVPTI 312
           N         C NCGK GH +++C SK    ++ E+AHVAQ +E+E  L +++  CV T+
Sbjct: 482 NSGSARKGDKCRNCGKLGHWAKDCRSK---SKREEQAHVAQEDEEEHTLMLLTGGCVDTV 541

Query: 313 DSKSTEMEVINNDVELEKELQLGVAKVAPAREPIQLEEERVFAQISERDEQHKDRRWILD 372
           D+ + E                G     P +  ++L E +VFA + +  + H   RWI+D
Sbjct: 542 DAAAPE----------------GDTPTPPHQAVVELVEMKVFAALDDAAD-HDPGRWIMD 601

Query: 373 TGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEHRKLTDVYFIP 432
           +GA+NHMTG+R AF++LD+ I G V+ GDGSVV I GRGTILFA K GEHR L++ Y++P
Sbjct: 602 SGASNHMTGSRMAFADLDTNITGNVRLGDGSVVRIAGRGTILFACKNGEHRTLSNTYYLP 661

Query: 433 RLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEIEQPVSLS 492
           RL AN++S+GQLDETG  +  E G++++ D QRRLL +  RT  RLY+L++ + +PV L+
Sbjct: 662 RLTANIISIGQLDETGFKVLAEDGIMRVWDEQRRLLARIPRTPGRLYMLDINLARPVCLA 721

Query: 493 AKIEEVSWRWHARYGHLNFPALEKLQKEELVHGLPAIKCVNKLCDGCLIGKQRRTPFPSR 552
           A  +E +WRWHAR GH+NF AL K+ KEELV GLP +  V+++C+ CL GK RR+PFP +
Sbjct: 722 AHADEDAWRWHARLGHINFRALCKMGKEELVRGLPCLSQVDQVCEACLAGKHRRSPFPRQ 781

Query: 553 TSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKCI 611
              R+DEPL L+HGD+CGPI PATP G   FLLLVDD SR+MW+ LL  K  A  A+K I
Sbjct: 782 ALCRSDEPLALLHGDLCGPITPATPSGNRYFLLLVDDYSRYMWVALLSTKDAAPAAIKRI 823

[Close]

BLAST of CmaCh03G000840 vs. TAIR10
Match: AT3G21000.1 (AT3G21000.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-07
Identity = 34/114 (29.82%), Postives = 56/114 (49.12%), Query Frame = 1


Query: 357 HKDRRWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEHR 416
           + D  WI+   A  +MT     F+ LD   + TV   DG+V+ +EG+G +    K G+ +
Sbjct: 275 YDDDIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKK 334

Query: 417 KLTDVYFIPRLKANLVSLGQLDETGCFISI-ERGLLKICDNQRRLLTQARRTTN 470
            + +V F+P L  N++S G++      IS   +G   +CD     L  A   T+
Sbjct: 335 TIRNVIFVPGLNRNVLSFGKMVSKRYSISTGMQGECIVCDRGENKLGDAMWMTD 388

[Close]

BLAST of CmaCh03G000840 vs. TAIR10
Match: AT3G20980.1 (AT3G20980.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 51.6 bits (122), Expect = 2.0e-06
Identity = 28/92 (30.43%), Postives = 50/92 (54.35%), Query Frame = 1


Query: 362 WILDTGATNHMTGARSAFSELDSGIRGTVKFGDG-----SVVEIEGRGTILFASKGGEHR 421
           W++ +  +NHMT     F+ LD   +  VKF  G     +V  +EG G + F +  G ++
Sbjct: 269 WLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEG-NK 328

Query: 422 KLTDVYFIPRLKANLVSLGQLDETGCFISIER 449
            + +V ++P ++ N +S+ QL   G  +S+ER
Sbjct: 329 TIKNVLYVPGIEGNALSVSQLKRNGFEVSMER 359

[Close]

BLAST of CmaCh03G000840 vs. NCBI nr
Match: gi|38344222|emb|CAE03692.2| (OSJNBb0026E15.10 [Oryza sativa Japonica Group])

HSP 1 Score: 396.7 bits (1018), Expect = 7.2e-107
Identity = 214/437 (48.97%), Postives = 291/437 (66.59%), Query Frame = 1


Query: 186 TASAGIQHRAGGRLLLTEEEWLARLKLRDNTRESNGSSSSRKDGKKPWISHGRMRGKDVN 245
           TA+A  +  A GRLL TEEEWLA+ +   + +++  SSS   D +      GR RGK  +
Sbjct: 229 TAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSSGNGDRR------GRGRGKKDD 288

Query: 246 QKKESTNGRPI---------CSNCGKRGHLSRNCWSKLRNKEKAEKAHVAQSEEDEPALF 305
              +    +P          C NCGKRGH +++C    R+K KA++A+VAQ E++EPAL 
Sbjct: 289 GAPKEAQPKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDEEPALL 348

Query: 306 MVSACVPTIDSKSTEMEVINNDVELEKELQLGVAKVAPAR-EPIQLEEERVFAQISERDE 365
           +       +D     +    N V          A  AP+    + + E +VFAQ+ +  E
Sbjct: 349 LAKV---QLDPPRPRVAAPTNVVSPPS------APRAPSPIGELAVVEAKVFAQLDDGGE 408

Query: 366 QHKDRRWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEH 425
            H    WILDTGATNHMTG+RSAF+ELD+ + GTV+FGDGSVV IEGR T+LF+ + GEH
Sbjct: 409 -HDPAMWILDTGATNHMTGSRSAFAELDTAVTGTVRFGDGSVVRIEGRVTVLFSCRFGEH 468

Query: 426 RKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILE 485
           R +  VY+IPRL AN+VSLGQLD +G  + I  G+L + D +  LL + RR+ + LY ++
Sbjct: 469 RGIAGVYYIPRLTANIVSLGQLDRSGSKVLIHHGILHVWDPRGHLLVRVRRSDDCLYTIK 528

Query: 486 LEIEQPVSLSAKIEEVSWRWHARYGHLNFPALEKLQKEELVHGLPAIKCVNKLCDGCLIG 545
           L+I++PV L+A+  E +WRWHARYGHLNFPAL KL ++E+V GLP ++ V ++CDGCL+G
Sbjct: 529 LDIDRPVCLAARSAEPAWRWHARYGHLNFPALRKLAQQEMVRGLPLLQQVTQVCDGCLLG 588

Query: 546 KQRRTPFPSRTSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAK 605
           KQRR  FP+++ YRADE LELVHGD+CGPI+PATP G   FLLLVDD SR+MWLT++++K
Sbjct: 589 KQRRAAFPTQSKYRADEHLELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWLTMIRSK 645

Query: 606 SEAAEAVKCIKARAEAE 613
            EAA A+K  +ARAE E
Sbjct: 649 DEAANAIKHFQARAEVE 645

[Close]

BLAST of CmaCh03G000840 vs. NCBI nr
Match: gi|116634828|emb|CAH66352.1| (OSIGBa0135C09.3 [Oryza sativa Indica Group])

HSP 1 Score: 393.7 bits (1010), Expect = 6.1e-106
Identity = 211/437 (48.28%), Postives = 290/437 (66.36%), Query Frame = 1


Query: 186 TASAGIQHRAGGRLLLTEEEWLARLKLRDNTRESNGSSSSRKDGKKPWISHGRMRGKDVN 245
           TA+A  +  A GRLL TEEEWLA+ +   + +++  SS    D +      GR RGK  +
Sbjct: 162 TAAASSRVDANGRLLFTEEEWLAKFRKAASLQDAAHSSGGNGDRQ------GRGRGKKDD 221

Query: 246 QKKESTNGRPI---------CSNCGKRGHLSRNCWSKLRNKEKAEKAHVAQSEEDEPALF 305
              +    +P          C NCGKRGH +++C    R+K KA++A+VAQ E++EPAL 
Sbjct: 222 GAPKEAQSKPANPGGRNPGNCKNCGKRGHWAKDC----RSKPKAQQAYVAQEEDEEPALL 281

Query: 306 MVSACVPTIDSKSTEMEVINNDVELEKELQLGVAKVAPA-REPIQLEEERVFAQISERDE 365
           +       +D     +    N V          A  AP+    + + E +VFAQ+ +  E
Sbjct: 282 LAKV---QLDPPRPRVAAPTNVVSPPS------APRAPSPMGELAVVEAKVFAQLDDGGE 341

Query: 366 QHKDRRWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEH 425
            H    WILDTGATNHMTG+RSAF++LD+ + GTV+FGDGSVV IEGRGT+LF+ + GEH
Sbjct: 342 -HDPAMWILDTGATNHMTGSRSAFAKLDTAVTGTVRFGDGSVVRIEGRGTVLFSCRFGEH 401

Query: 426 RKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILE 485
           R +  VY+IPRL AN+VSLGQLD +G  + I  G+L++ D +  LL + RR+ + LY ++
Sbjct: 402 RGIAGVYYIPRLTANIVSLGQLDRSGSKVLIHHGVLRVWDPRGHLLVRVRRSDDCLYTIK 461

Query: 486 LEIEQPVSLSAKIEEVSWRWHARYGHLNFPALEKLQKEELVHGLPAIKCVNKLCDGCLIG 545
           L I++PV L+A+  + +WRWHARYGHLNFP+L KL ++E+V GLP ++ V ++CDGCL+G
Sbjct: 462 LNIDRPVYLAARSAKPAWRWHARYGHLNFPSLRKLAQQEMVRGLPLLQQVTQVCDGCLLG 521

Query: 546 KQRRTPFPSRTSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAK 605
           KQRR  FP+++ YRADE LELVHGD+CGPI+PATP G   FLLLVDD SR+MWLTL+++K
Sbjct: 522 KQRRAAFPTQSKYRADEHLELVHGDLCGPIEPATPAGNRYFLLLVDDMSRYMWLTLIRSK 578

Query: 606 SEAAEAVKCIKARAEAE 613
            EAA A+K  +A AE E
Sbjct: 582 DEAANAIKHFQAHAEVE 578

[Close]

BLAST of CmaCh03G000840 vs. NCBI nr
Match: gi|113623687|dbj|BAF23632.1| (Os08g0389500 [Oryza sativa Japonica Group])

HSP 1 Score: 383.3 bits (983), Expect = 8.3e-103
Identity = 222/449 (49.44%), Postives = 282/449 (62.81%), Query Frame = 1


Query: 182 SGRCTASAGIQHRAG------GRLLLTEEEWLARLKLRDNTRESNGSSSSRKDG-KKPWI 241
           +GR  A    +HR+       GRLLLT+EEW+A+LK    + E    S S   G K+   
Sbjct: 217 TGRLRAVEQRRHRSAPVVNNQGRLLLTQEEWMAKLKNPGASGEKGTPSGSGGGGNKRTGG 276

Query: 242 SHGRMRGKD-----------VNQKKESTNGRPICSNCGKRGHLSRNCWSKLRNKEKAEKA 301
           S    RGK             NQ K++      C  CGK+GH ++ C S+LR     ++A
Sbjct: 277 SRRHDRGKGGSRQAAGPGDGSNQPKKTDK----CRYCGKKGHWAKECRSRLR-----DEA 336

Query: 302 HVAQSEEDEPALFMVSACVPTIDSKSTEMEVINNDVELEKELQLGVAKVAPAREPIQLEE 361
           H+AQ EE+E  + MV+       S S+     +                 PA E I L+E
Sbjct: 337 HLAQGEEEEEPMLMVATAQVNAISSSSPPRFTS----------------LPALEQIHLDE 396

Query: 362 ERVFAQISERDEQHKDRRWILDTGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGR 421
            ++F Q+   +   +  RWILDTGATNHMTG RSAFSEL++GIRGTVKFGDGSVV IEGR
Sbjct: 397 SKLFVQLGG-EHGGEATRWILDTGATNHMTGTRSAFSELNTGIRGTVKFGDGSVVGIEGR 456

Query: 422 GTILFASKGGEHRKLTDVYFIPRLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQ 481
           GT+LF  K GEH+ L  VY IPRL  N+VSLGQLDE     S E G+LKI + QRRLL +
Sbjct: 457 GTVLFKCKDGEHQALEGVYHIPRLTTNIVSLGQLDEEKFKWSCEDGVLKIWNKQRRLLAK 516

Query: 482 ARRTTNRLYILELEIEQPVSLSAKIEEVSWRWHARYGHLNFPALEKLQKEELVHGLPAIK 541
             R+ NRLY+++L I +PV L+A+  +++WRWHAR+GHLNF ALEKL +  +V GLP I 
Sbjct: 517 VVRSPNRLYVVKLNIGRPVCLAAQGGDIAWRWHARFGHLNFRALEKLGRAVMVRGLPLIN 576

Query: 542 CVNKLCDGCLIGKQRRTPFPSRTSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDK 601
            V+++CD CL+GKQRR PFPS+  YRA E LELVHGDICGP+ PATP G  LFLLLVDD 
Sbjct: 577 HVDQVCDSCLVGKQRRLPFPSKAKYRAKEKLELVHGDICGPVTPATPSGNKLFLLLVDDL 636

Query: 602 SRFMWLTLLQAKSEAAEAVKCIKARAEAE 613
           SR+MWL LL +K +A+ A+K   A AEAE
Sbjct: 637 SRYMWLILLSSKDQASVAIKRFLACAEAE 639

[Close]

BLAST of CmaCh03G000840 vs. NCBI nr
Match: gi|255679425|dbj|BAF26572.2| (Os10g0429700, partial [Oryza sativa Japonica Group])

HSP 1 Score: 375.2 bits (962), Expect = 2.2e-100
Identity = 202/425 (47.53%), Postives = 272/425 (64.00%), Query Frame = 1


Query: 193 HRAGGRLLLTEEEWLARLKLRDNTRESNGSSSSRKDGKKPWISHGRMR-GKDVNQKKEST 252
           H A G+L LTEEEW  R K +D   +   S SS   GK+     GR R G       EST
Sbjct: 226 HTADGKLYLTEEEWAERQKKKDQEAKRGDSGSSGGRGKR---RGGRGRTGGGGTASPEST 285

Query: 253 NGRPI-----CSNCGKRGHLSRNCWSKLRNKEKAEKAHVAQSEEDEPALFMVSA-CVPTI 312
           N         C NCGK GH +++C SK    ++ E+AHVAQ +E+E  L +++  CV T+
Sbjct: 286 NSGSARKGDKCRNCGKLGHWAKDCRSK---SKREEQAHVAQEDEEEHTLMLLTGGCVDTV 345

Query: 313 DSKSTEMEVINNDVELEKELQLGVAKVAPAREPIQLEEERVFAQISERDEQHKDRRWILD 372
           D+ + E                G     P +  ++L E +VFA + +  + H   RWI+D
Sbjct: 346 DAAAPE----------------GDTPTPPHQAVVELVEMKVFAALDDAAD-HDPGRWIMD 405

Query: 373 TGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEHRKLTDVYFIP 432
           +GA+NHMTG+R AF++LD+ I G V+ GDGSVV I GRGTILFA K GEHR L++ Y++P
Sbjct: 406 SGASNHMTGSRMAFADLDTNITGNVRLGDGSVVRIAGRGTILFACKNGEHRTLSNTYYLP 465

Query: 433 RLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEIEQPVSLS 492
           RL AN++S+GQLDETG  +  E G++++ D QRRLL +  RT  RLY+L++ + +PV L+
Sbjct: 466 RLTANIISIGQLDETGFKVLAEDGIMRVWDEQRRLLARIPRTPGRLYMLDINLARPVCLA 525

Query: 493 AKIEEVSWRWHARYGHLNFPALEKLQKEELVHGLPAIKCVNKLCDGCLIGKQRRTPFPSR 552
           A  +E +WRWHAR GH+NF AL K+ KEELV GLP +  V+++C+ CL GK RR+PFP +
Sbjct: 526 AHADEDAWRWHARLGHINFRALCKMGKEELVRGLPCLSQVDQVCEACLAGKHRRSPFPRQ 585

Query: 553 TSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKCI 611
              R+DEPL L+HGD+CGPI PATP G   FLLLVDD SR+MW+ LL  K  A  A+K I
Sbjct: 586 ALCRSDEPLALLHGDLCGPITPATPSGNRYFLLLVDDYSRYMWVALLSTKDAAPAAIKRI 627

[Close]

BLAST of CmaCh03G000840 vs. NCBI nr
Match: gi|110289120|gb|AAP53887.2| (retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group])

HSP 1 Score: 375.2 bits (962), Expect = 2.2e-100
Identity = 202/425 (47.53%), Postives = 272/425 (64.00%), Query Frame = 1


Query: 193 HRAGGRLLLTEEEWLARLKLRDNTRESNGSSSSRKDGKKPWISHGRMR-GKDVNQKKEST 252
           H A G+L LTEEEW  R K +D   +   S SS   GK+     GR R G       EST
Sbjct: 422 HTADGKLYLTEEEWAERQKKKDQEAKRGDSGSSGGRGKR---RGGRGRTGGGGTASPEST 481

Query: 253 NGRPI-----CSNCGKRGHLSRNCWSKLRNKEKAEKAHVAQSEEDEPALFMVSA-CVPTI 312
           N         C NCGK GH +++C SK    ++ E+AHVAQ +E+E  L +++  CV T+
Sbjct: 482 NSGSARKGDKCRNCGKLGHWAKDCRSK---SKREEQAHVAQEDEEEHTLMLLTGGCVDTV 541

Query: 313 DSKSTEMEVINNDVELEKELQLGVAKVAPAREPIQLEEERVFAQISERDEQHKDRRWILD 372
           D+ + E                G     P +  ++L E +VFA + +  + H   RWI+D
Sbjct: 542 DAAAPE----------------GDTPTPPHQAVVELVEMKVFAALDDAAD-HDPGRWIMD 601

Query: 373 TGATNHMTGARSAFSELDSGIRGTVKFGDGSVVEIEGRGTILFASKGGEHRKLTDVYFIP 432
           +GA+NHMTG+R AF++LD+ I G V+ GDGSVV I GRGTILFA K GEHR L++ Y++P
Sbjct: 602 SGASNHMTGSRMAFADLDTNITGNVRLGDGSVVRIAGRGTILFACKNGEHRTLSNTYYLP 661

Query: 433 RLKANLVSLGQLDETGCFISIERGLLKICDNQRRLLTQARRTTNRLYILELEIEQPVSLS 492
           RL AN++S+GQLDETG  +  E G++++ D QRRLL +  RT  RLY+L++ + +PV L+
Sbjct: 662 RLTANIISIGQLDETGFKVLAEDGIMRVWDEQRRLLARIPRTPGRLYMLDINLARPVCLA 721

Query: 493 AKIEEVSWRWHARYGHLNFPALEKLQKEELVHGLPAIKCVNKLCDGCLIGKQRRTPFPSR 552
           A  +E +WRWHAR GH+NF AL K+ KEELV GLP +  V+++C+ CL GK RR+PFP +
Sbjct: 722 AHADEDAWRWHARLGHINFRALCKMGKEELVRGLPCLSQVDQVCEACLAGKHRRSPFPRQ 781

Query: 553 TSYRADEPLELVHGDICGPIKPATPGGKSLFLLLVDDKSRFMWLTLLQAKSEAAEAVKCI 611
              R+DEPL L+HGD+CGPI PATP G   FLLLVDD SR+MW+ LL  K  A  A+K I
Sbjct: 782 ALCRSDEPLALLHGDLCGPITPATPSGNRYFLLLVDDYSRYMWVALLSTKDAAPAAIKRI 823

The following BLAST results are available for this feature:

BLAST of CmaCh03G000840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	8.2e-26	32.18	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	1.1e-19	25.67	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]

BLAST of CmaCh03G000840 vs. TrEMBL


Match Name	E-value	Identity	Description
Q7XPB1_ORYSJ	5.0e-107	48.97	OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=...	[more]
A0B9X7_ORYSA	4.3e-106	48.28	OSIGBa0135C09.3 protein OS=Oryza sativa GN=OSIGBa0135C09.3 PE=4 SV=1	[more]
Q0J5Y3_ORYSJ	5.8e-103	49.44	Os08g0389500 protein OS=Oryza sativa subsp. japonica GN=Os08g0389500 PE=4 SV=1	[more]
Q0IXJ3_ORYSJ	1.6e-100	47.53	Os10g0429700 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os10g0429700 ...	[more]
Q7XEA3_ORYSJ	1.6e-100	47.53	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. jap...	[more]

BLAST of CmaCh03G000840 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21000.1	5.3e-07	29.82	Gag-Pol-related retrotransposon family protein	[more]
AT3G20980.1	2.0e-06	30.43	Gag-Pol-related retrotransposon family protein	[more]

BLAST of CmaCh03G000840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|38344222\|emb\|CAE03692.2\|	7.2e-107	48.97	OSJNBb0026E15.10 [Oryza sativa Japonica Group]	[more]
gi\|116634828\|emb\|CAH66352.1\|	6.1e-106	48.28	OSIGBa0135C09.3 [Oryza sativa Indica Group]	[more]
gi\|113623687\|dbj\|BAF23632.1\|	8.3e-103	49.44	Os08g0389500 [Oryza sativa Japonica Group]	[more]
gi\|255679425\|dbj\|BAF26572.2\|	2.2e-100	47.53	Os10g0429700, partial [Oryza sativa Japonica Group]	[more]
gi\|110289120\|gb\|AAP53887.2\|	2.2e-100	47.53	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Gro...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR012337	RNaseH-like_sf
IPR025314	DUF4219
IPR025724	GAG-pre-integrase_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009536	plastid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G000840.1	CmaCh03G000840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 257..272 score: 2.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 256..270 score: 4.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 256..272 score: 6.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 257..270 score: 9
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 241..279 score: 2.6
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 547..613 score: 2.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 548..611 score: 5.
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 130..154 score: 1.
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 470..537 score: 1.4
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 341..610 score: 1.1E-166coord: 80..293 score: 1.1E
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 341..610 score: 1.1E-166coord: 80..293 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G000840	Carg22473	Silver-seed gourd	carcmaB0266

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G000840	Wax gourd	cmawgoB0795
CmaCh03G000840	Cucurbita maxima (Rimu)	cmacmaB530
CmaCh03G000840	Cucurbita moschata (Rifu)	cmacmoB654
CmaCh03G000840	Cucurbita moschata (Rifu)	cmacmoB674
CmaCh03G000840	Wild cucumber (PI 183967)	cmacpiB679
CmaCh03G000840	Cucumber (Chinese Long) v2	cmacuB670
CmaCh03G000840	Melon (DHL92) v3.5.1	cmameB613
CmaCh03G000840	Watermelon (Charleston Gray)	cmawcgB586
CmaCh03G000840	Watermelon (97103) v1	cmawmB636
CmaCh03G000840	Watermelon (97103) v1	cmawmB641
CmaCh03G000840	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G000840	Cucurbita pepo (Zucchini)	cmacpeB669
CmaCh03G000840	Bottle gourd (USVL1VR-Ls)	cmalsiB598
CmaCh03G000840	Cucumber (Gy14) v2	cgybcmaB535
CmaCh03G000840	Silver-seed gourd	carcmaB0397
CmaCh03G000840	Cucumber (Chinese Long) v3	cmacucB0799
CmaCh03G000840	Watermelon (97103) v2	cmawmbB685