CmaCh03G000580 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G000580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr03 : 582729 .. 582977 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTATCCAGGGGTCGCGGACCGACCATAG

mRNA sequence

ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTATCCAGGGGTCGCGGACCGACCATAG

Coding sequence (CDS)

ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTATCCAGGGGTCGCGGACCGACCATAG

Protein sequence

MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVADRP

Homology

[Close]

BLAST of CmaCh03G000580 vs. TrEMBL
Match: U5CKY2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02909p00006680 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-40
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGRLRYPGVADRP 83
          HPVGTTRSPQGRLR+PGVADRP
Sbjct: 61 HPVGTTRSPQGRLRHPGVADRP 82

[Close]

BLAST of CmaCh03G000580 vs. TrEMBL
Match: A0A151UE16_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_050059 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.5e-32
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66
          VVGVGGS RV SSGIPGEEDQVGPCEQLDALSPFNPLSEMR+KE +SMDRPHRLHPVGTT
Sbjct: 1  VVGVGGSPRVSSSGIPGEEDQVGPCEQLDALSPFNPLSEMRKKEKESMDRPHRLHPVGTT 60

Query: 67 RSPQGRLRYPGVADRP 83
          RSPQGRLR+PGVADRP
Sbjct: 61 RSPQGRLRHPGVADRP 76

[Close]

BLAST of CmaCh03G000580 vs. TrEMBL
Match: D7MVM4_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_683153 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 21 IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD 80
          IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD
Sbjct: 36 IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD 95

Query: 81 RP 83
          RP
Sbjct: 96 RP 97

[Close]

BLAST of CmaCh03G000580 vs. TrEMBL
Match: U5D9L3_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00061p00179620 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.4e-27
Identity = 62/77 (80.52%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWT+VGV GS RV S+GIPGEEDQVGPCEQLDALSPF PL EM QKE KSM RPHRL
Sbjct: 1  MDRTWTIVGVDGSHRVTSAGIPGEEDQVGPCEQLDALSPFTPLIEMWQKEEKSMGRPHRL 60

Query: 61 HPVGTTRSPQGRLRYPG 78
          HP+GTTRS QGRL   G
Sbjct: 61 HPIGTTRSSQGRLGIQG 77

[Close]

BLAST of CmaCh03G000580 vs. TrEMBL
Match: A0A0K9PBW1_ZOSMR (Uncharacterized protein OS=Zostera marina GN=ZOSMA_313G00200 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-25
Identity = 59/71 (83.10%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MD TW  VGVG S RVPSS IPGEEDQVGPCEQ DAL PFNPLSEM QKE K MDRPHRL
Sbjct: 1  MDHTWMTVGVGSSSRVPSSEIPGEEDQVGPCEQFDALPPFNPLSEMWQKERKFMDRPHRL 60

Query: 61 HPVGTTRSPQG 72
          HPVGTTRS QG
Sbjct: 61 HPVGTTRSSQG 71

[Close]

BLAST of CmaCh03G000580 vs. NCBI nr
Match: gi|548835773|gb|ERM97427.1| (hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda])

HSP 1 Score: 172.2 bits (435), Expect = 3.8e-40
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL
Sbjct: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60

Query: 61 HPVGTTRSPQGRLRYPGVADRP 83
          HPVGTTRSPQGRLR+PGVADRP
Sbjct: 61 HPVGTTRSPQGRLRHPGVADRP 82

[Close]

BLAST of CmaCh03G000580 vs. NCBI nr
Match: gi|1012366342|gb|KYP77523.1| (hypothetical protein KK1_050059, partial [Cajanus cajan])

HSP 1 Score: 145.2 bits (365), Expect = 5.0e-32
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 7  VVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTT 66
          VVGVGGS RV SSGIPGEEDQVGPCEQLDALSPFNPLSEMR+KE +SMDRPHRLHPVGTT
Sbjct: 1  VVGVGGSPRVSSSGIPGEEDQVGPCEQLDALSPFNPLSEMRKKEKESMDRPHRLHPVGTT 60

Query: 67 RSPQGRLRYPGVADRP 83
          RSPQGRLR+PGVADRP
Sbjct: 61 RSPQGRLRHPGVADRP 76

[Close]

BLAST of CmaCh03G000580 vs. NCBI nr
Match: gi|297790838|ref|XP_002863304.1| (predicted protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 132.9 bits (333), Expect = 2.6e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 21 IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD 80
          IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD
Sbjct: 36 IPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRYPGVAD 95

Query: 81 RP 83
          RP
Sbjct: 96 RP 97

[Close]

BLAST of CmaCh03G000580 vs. NCBI nr
Match: gi|548861813|gb|ERN19184.1| (hypothetical protein AMTR_s00061p00179620 [Amborella trichopoda])

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-27
Identity = 62/77 (80.52%), Postives = 65/77 (84.42%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MDRTWT+VGV GS RV S+GIPGEEDQVGPCEQLDALSPF PL EM QKE KSM RPHRL
Sbjct: 1  MDRTWTIVGVDGSHRVTSAGIPGEEDQVGPCEQLDALSPFTPLIEMWQKEEKSMGRPHRL 60

Query: 61 HPVGTTRSPQGRLRYPG 78
          HP+GTTRS QGRL   G
Sbjct: 61 HPIGTTRSSQGRLGIQG 77

[Close]

BLAST of CmaCh03G000580 vs. NCBI nr
Match: gi|901808862|gb|KMZ65670.1| (hypothetical protein ZOSMA_313G00200 [Zostera marina])

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-25
Identity = 59/71 (83.10%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MDRTWTVVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRL 60
          MD TW  VGVG S RVPSS IPGEEDQVGPCEQ DAL PFNPLSEM QKE K MDRPHRL
Sbjct: 1  MDHTWMTVGVGSSSRVPSSEIPGEEDQVGPCEQFDALPPFNPLSEMWQKERKFMDRPHRL 60

Query: 61 HPVGTTRSPQG 72
          HPVGTTRS QG
Sbjct: 61 HPVGTTRSSQG 71

The following BLAST results are available for this feature:

BLAST of CmaCh03G000580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G000580 vs. TrEMBL


Match Name	E-value	Identity	Description
U5CKY2_AMBTC	2.7e-40	98.78	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s02909p00006680 PE=4 SV=...	[more]
A0A151UE16_CAJCA	3.5e-32	92.11	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_050059 PE=4 SV=1	[more]
D7MVM4_ARALL	1.8e-28	100.00	Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_683153 PE=4 ...	[more]
U5D9L3_AMBTC	4.4e-27	80.52	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00061p00179620 PE=4 SV=...	[more]
A0A0K9PBW1_ZOSMR	2.4e-25	83.10	Uncharacterized protein OS=Zostera marina GN=ZOSMA_313G00200 PE=4 SV=1	[more]

BLAST of CmaCh03G000580 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh03G000580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|548835773\|gb\|ERM97427.1\|	3.8e-40	98.78	hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda]	[more]
gi\|1012366342\|gb\|KYP77523.1\|	5.0e-32	92.11	hypothetical protein KK1_050059, partial [Cajanus cajan]	[more]
gi\|297790838\|ref\|XP_002863304.1\|	2.6e-28	100.00	predicted protein [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|548861813\|gb\|ERN19184.1\|	6.3e-27	80.52	hypothetical protein AMTR_s00061p00179620 [Amborella trichopoda]	[more]
gi\|901808862\|gb\|KMZ65670.1\|	3.5e-25	83.10	hypothetical protein ZOSMA_313G00200 [Zostera marina]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G000580.1	CmaCh03G000580.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G000580	Silver-seed gourd	carcmaB0397
CmaCh03G000580	Cucumber (Chinese Long) v3	cmacucB0801
CmaCh03G000580	Watermelon (97103) v2	cmawmbB691
CmaCh03G000580	Wax gourd	cmawgoB0795
CmaCh03G000580	Wax gourd	cmawgoB0802
CmaCh03G000580	Cucurbita maxima (Rimu)	cmacmaB530
CmaCh03G000580	Cucurbita moschata (Rifu)	cmacmoB654
CmaCh03G000580	Cucurbita moschata (Rifu)	cmacmoB674
CmaCh03G000580	Wild cucumber (PI 183967)	cmacpiB681
CmaCh03G000580	Cucumber (Chinese Long) v2	cmacuB673
CmaCh03G000580	Melon (DHL92) v3.5.1	cmameB613
CmaCh03G000580	Watermelon (Charleston Gray)	cmawcgB592
CmaCh03G000580	Watermelon (97103) v1	cmawmB635
CmaCh03G000580	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G000580	Cucurbita pepo (Zucchini)	cmacpeB669
CmaCh03G000580	Bottle gourd (USVL1VR-Ls)	cmalsiB598
CmaCh03G000580	Cucumber (Gy14) v2	cgybcmaB538