CmaCh03G000300 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G000300
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Mitochondrial transcription termination factor family protein, putative
Location	Cma_Chr03 : 291395 .. 291827 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGTTGGCTCAAGGAACAAGGAGCAGCCGACCCTGCATTGGCGTTGAGCACCATCGTTCCGTGTTCGGAAAATACATTTCTAAGACGGTATGTGAATCATCATCCCGGGGCCATGGAAGTTTGGCAGAATTTAAAGAGAGAAATAGGTTTGAATTCTTTTACATCTCGTGCTCGTTAGACTATACTCGTGCTCGTTAGACTATACTCGTGCTGTTATACTACATTTTTTTCAATAATTCATGGATTTGAGGGCTAATCTGCTGTAAAGATCAGTGAAAAAGTTCGATTTTTCGGGAAATGATAGTCGAACTTCGAAATACTGCATCATTTTCACAAAGTAGACATACTAAATAGTTTGTTGCTTGCAGTTCCTGTGAAACTTGTCTTCCTTATTTGCAGGTTTCGATGGTCCTCTTGGGGGAGTGTAA

mRNA sequence

ATGTATAGTTGGCTCAAGGAACAAGGAGCAGCCGACCCTGCATTGGCGTTGAGCACCATCGTTCCGTGTTCGGAAAATACATTTCTAAGACGGTATGTGAATCATCATCCCGGGGCCATGGAAGTTTGGCAGAATTTAAAGAGAGAAATAGGTTTCGATGGTCCTCTTGGGGGAGTGTAA

Coding sequence (CDS)

ATGTATAGTTGGCTCAAGGAACAAGGAGCAGCCGACCCTGCATTGGCGTTGAGCACCATCGTTCCGTGTTCGGAAAATACATTTCTAAGACGGTATGTGAATCATCATCCCGGGGCCATGGAAGTTTGGCAGAATTTAAAGAGAGAAATAGGTTTCGATGGTCCTCTTGGGGGAGTGTAA

Protein sequence

MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKREIGFDGPLGGV

Homology

[Close]

BLAST of CmaCh03G000300 vs. TrEMBL
Match: A0A0A0L2G9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507370 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-14
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKREIGFD 54
           MY+WLKEQG ADP LAL TIV CSE  FLR +VN HP  MEVW+NLKREI  D
Sbjct: 535 MYNWLKEQGTADPMLALKTIVSCSEYEFLRHHVNRHPRGMEVWENLKREIYSD 587

[Close]

BLAST of CmaCh03G000300 vs. TrEMBL
Match: K4BH85_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 9.9e-13
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKREI 51
           MY+WLK+QG  DP L+LSTI+ CSE  F++ YVN HP  +EVWQ+LKREI
Sbjct: 513 MYNWLKDQGKVDPTLSLSTIIACSEKLFMKTYVNPHPKGLEVWQDLKREI 562

[Close]

BLAST of CmaCh03G000300 vs. TrEMBL
Match: A0A061EXQ3_THECC (Mitochondrial transcription termination factor family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_024876 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLK 48
           MYSWLK+QG A+P LALSTIV CS+  FLR+YVNHHP   +VWQ+LK
Sbjct: 532 MYSWLKDQGKAEPDLALSTIVACSDKLFLRQYVNHHPSGPQVWQDLK 578

[Close]

BLAST of CmaCh03G000300 vs. TrEMBL
Match: A0A061F4J6_THECC (Mitochondrial transcription termination factor family protein, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_024876 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLK 48
           MYSWLK+QG A+P LALSTIV CS+  FLR+YVNHHP   +VWQ+LK
Sbjct: 532 MYSWLKDQGKAEPDLALSTIVACSDKLFLRQYVNHHPSGPQVWQDLK 578

[Close]

BLAST of CmaCh03G000300 vs. TrEMBL
Match: A5BGN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g06290 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.4e-12
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKREI 51
           MY+WLK+QG A+P LALSTI+ CS+N F+ RYVN HP   E+W+ LK++I
Sbjct: 537 MYNWLKDQGVAEPNLALSTIIACSDNYFIDRYVNRHPKGAEIWEKLKQKI 586

[Close]

BLAST of CmaCh03G000300 vs. TAIR10
Match: AT5G06810.1 (AT5G06810.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-08
Identity = 22/48 (45.83%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 1    MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKR 49
            M+SWL+++G ADP L +STI+ CS+  F  R+VN HP   +  ++LK+
Sbjct: 1090 MFSWLQDRGKADPKLQVSTILVCSDKFFATRFVNRHPDGPKHLEDLKK 1137

[Close]

BLAST of CmaCh03G000300 vs. TAIR10
Match: AT4G19650.1 (AT4G19650.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.5e-07
Identity = 19/48 (39.58%), Postives = 32/48 (66.67%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKR 49
           MY WL+E+ AA P L+ STI+ C +  F++ +VN HP    +W+++ +
Sbjct: 525 MYLWLRERDAAKPMLSPSTILTCGDARFVKYFVNVHPEGPAIWESINQ 572

[Close]

BLAST of CmaCh03G000300 vs. TAIR10
Match: AT5G45113.1 (AT5G45113.1 mitochondrial transcription termination factor-related / mTERF-related)

HSP 1 Score: 48.1 bits (113), Expect = 2.1e-06
Identity = 19/48 (39.58%), Postives = 27/48 (56.25%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKR 49
           MY WL+E+ A  P L L T+V  S    +  +VN HP     W+N+K+
Sbjct: 364 MYIWLRERDAVIPRLTLGTVVGISNTLIVPYFVNTHPEGPATWENIKK 411

[Close]

BLAST of CmaCh03G000300 vs. NCBI nr
Match: gi|449457339|ref|XP_004146406.1| (PREDICTED: uncharacterized protein LOC101221161 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-14
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKREIGFD 54
           MY+WLKEQG ADP LAL TIV CSE  FLR +VN HP  MEVW+NLKREI  D
Sbjct: 535 MYNWLKEQGTADPMLALKTIVSCSEYEFLRHHVNRHPRGMEVWENLKREIYSD 587

[Close]

BLAST of CmaCh03G000300 vs. NCBI nr
Match: gi|659082918|ref|XP_008442100.1| (PREDICTED: uncharacterized protein LOC103486062 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 9.9e-14
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKREIGFD 54
           MY+WLKEQG     L +STIV C+EN FL+RYVNHHP  MEVW+NLKREI  D
Sbjct: 471 MYNWLKEQGTIKRILQMSTIVSCTENEFLKRYVNHHPRGMEVWENLKREIYSD 523

[Close]

BLAST of CmaCh03G000300 vs. NCBI nr
Match: gi|659082933|ref|XP_008442104.1| (PREDICTED: uncharacterized protein LOC103486064 isoform X1 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 8.4e-13
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKREIGFD 54
           MY+WLKEQG A+P  AL TI+ CSE  FLR +VN HP  MEVW+NLKREI  D
Sbjct: 538 MYNWLKEQGTANPMSALKTIISCSEYEFLRHHVNRHPRGMEVWENLKREIYSD 590

[Close]

BLAST of CmaCh03G000300 vs. NCBI nr
Match: gi|970020075|ref|XP_015071253.1| (PREDICTED: uncharacterized protein LOC107015484 [Solanum pennellii])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-12
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKREI 51
           MY+WLK+QG  DP L+LSTI+ CSE  F++ YVN HP  +EVWQ+LKREI
Sbjct: 514 MYNWLKDQGKVDPTLSLSTIIACSEKLFMKTYVNPHPKGLEVWQDLKREI 563

[Close]

BLAST of CmaCh03G000300 vs. NCBI nr
Match: gi|723681631|ref|XP_010317912.1| (PREDICTED: uncharacterized protein LOC101244846 [Solanum lycopersicum])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-12
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 1   MYSWLKEQGAADPALALSTIVPCSENTFLRRYVNHHPGAMEVWQNLKREI 51
           MY+WLK+QG  DP L+LSTI+ CSE  F++ YVN HP  +EVWQ+LKREI
Sbjct: 513 MYNWLKDQGKVDPTLSLSTIIACSEKLFMKTYVNPHPKGLEVWQDLKREI 562

The following BLAST results are available for this feature:

BLAST of CmaCh03G000300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G000300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2G9_CUCSA	2.4e-14	71.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G507370 PE=4 SV=1	[more]
K4BH85_SOLLC	9.9e-13	64.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A061EXQ3_THECC	1.7e-12	70.21	Mitochondrial transcription termination factor family protein, putative isoform ...	[more]
A0A061F4J6_THECC	1.7e-12	70.21	Mitochondrial transcription termination factor family protein, putative isoform ...	[more]
A5BGN8_VITVI	8.4e-12	60.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g06290 PE=4 SV=...	[more]

BLAST of CmaCh03G000300 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06810.1	1.0e-08	45.83	Mitochondrial transcription termination factor family protein	[more]
AT4G19650.1	1.5e-07	39.58	Mitochondrial transcription termination factor family protein	[more]
AT5G45113.1	2.1e-06	39.58	mitochondrial transcription termination factor-related / mTERF-relat...	[more]

BLAST of CmaCh03G000300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457339\|ref\|XP_004146406.1\|	3.4e-14	71.70	PREDICTED: uncharacterized protein LOC101221161 [Cucumis sativus]	[more]
gi\|659082918\|ref\|XP_008442100.1\|	9.9e-14	67.92	PREDICTED: uncharacterized protein LOC103486062 [Cucumis melo]	[more]
gi\|659082933\|ref\|XP_008442104.1\|	8.4e-13	66.04	PREDICTED: uncharacterized protein LOC103486064 isoform X1 [Cucumis melo]	[more]
gi\|970020075\|ref\|XP_015071253.1\|	1.4e-12	64.00	PREDICTED: uncharacterized protein LOC107015484 [Solanum pennellii]	[more]
gi\|723681631\|ref\|XP_010317912.1\|	1.4e-12	64.00	PREDICTED: uncharacterized protein LOC101244846 [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009536	plastid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G000300.1	CmaCh03G000300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..50 score: 9.0
None	No IPR available	PANTHER	PTHR13068:SF38	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 1..50 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G000300	Cucsa.263970	Cucumber (Gy14) v1	cgycmaB0741
CmaCh03G000300	Csa4G507370	Cucumber (Chinese Long) v2	cmacuB672
CmaCh03G000300	MELO3C008910	Melon (DHL92) v3.5.1	cmameB620
CmaCh03G000300	CSPI04G20290	Wild cucumber (PI 183967)	cmacpiB673
CmaCh03G000300	CmoCh03G000300	Cucurbita moschata (Rifu)	cmacmoB654
CmaCh03G000300	MELO3C008910.2	Melon (DHL92) v3.6.1	cmamedB706
CmaCh03G000300	CsaV3_4G030480	Cucumber (Chinese Long) v3	cmacucB0793
CmaCh03G000300	Bhi03G002334	Wax gourd	cmawgoB0796
CmaCh03G000300	CsGy4G018900	Cucumber (Gy14) v2	cgybcmaB530
CmaCh03G000300	Carg25008	Silver-seed gourd	carcmaB0735

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G000300	Melon (DHL92) v3.6.1	cmamedB700
CmaCh03G000300	Silver-seed gourd	carcmaB0661
CmaCh03G000300	Watermelon (97103) v2	cmawmbB688
CmaCh03G000300	Watermelon (97103) v2	cmawmbB693
CmaCh03G000300	Cucurbita maxima (Rimu)	cmacmaB530
CmaCh03G000300	Cucurbita moschata (Rifu)	cmacmoB674
CmaCh03G000300	Wild cucumber (PI 183967)	cmacpiB676
CmaCh03G000300	Cucumber (Chinese Long) v2	cmacuB665
CmaCh03G000300	Melon (DHL92) v3.5.1	cmameB614
CmaCh03G000300	Watermelon (Charleston Gray)	cmawcgB589
CmaCh03G000300	Watermelon (Charleston Gray)	cmawcgB594
CmaCh03G000300	Watermelon (97103) v1	cmawmB637
CmaCh03G000300	Watermelon (97103) v1	cmawmB643
CmaCh03G000300	Cucurbita pepo (Zucchini)	cmacpeB654
CmaCh03G000300	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G000300	Cucurbita pepo (Zucchini)	cmacpeB669
CmaCh03G000300	Bottle gourd (USVL1VR-Ls)	cmalsiB599