CmaCh02G018110 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G018110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA exonuclease 4
Location	Cma_Chr02 : 10062356 .. 10066034 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTCTATCACCACCAAAGAATGCCTAAGGTTGGCATCTTTTCATTTAACCCTCTGCAATTGTTTCCAATTTTTGTCTTATTGAGTACTTGACGTTGACGATGGAAATTATAGTGTATATTTGTTTACAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAGAGTTTCGTATCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCAAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAATGGTGAGATATTTTGTGTTTTTTTTGTGGTAATATATCATAACACCATCTTATTACAATCCAGTCTTTTAGGTCCACTTTCAAAATCAAATTGTTCAAAAATTTTCTTGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGATCGCACATCTCTCAGTGGGCATCAAGACATTTGCCGCTTAACAGCTCCTGTTCGCCAAGTCAGTCGCCTGTGCTCTATGCATCATATATGAAAATTAATGAAGTTACTGATAGTTCTCTTAAAAAAATAAGGTTACTGGTAGTATATATTTCTAGATCAATCTTGAAATTGAACCATTTATTATTAGTTTTTTTTTCTTAATGCGGAACCTACTTTCATGGAGAGAAATGAAAGAATATATACGTCCATACAAAACAAGAAAAAAAAAAAAAAAGAAGAAGAAGAAAACAGCCCCAAAAAGGAGTCCAACACTAATTAAGAAAAGGACTCCGATCCAAAAGTGCAAGATCTAGTTGATATATATATATATATAAAGAGAAGCAAAGACCGATGCCCACAACGAGATCTTAATGCTCAATATACCAAGCCTCACTTGCAGGTCTCATCAAGCCCCTAAATAGCATTTGAACTTTTATTGAAAACGACCTCGATTAAGATTATTATTTATTAAAGTGCACAATATCAGTAACCCTCTGCAATATCAGGTAAACGATTAAGATTATTATTTATTAAAGTGCTTATGATATCATACATGCATTTCAAAATTTGATTGGGGTTCTGTTGTAGGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATGGATTGTGTAATGGCTGGCGGTGGAAGTGATGGCACACTGGACATTTGTATTGGGATCTGCCTTGTTGATGAAGACGAGAAATTGATTTTCAATACTTTTGTACAACCACAAATACCAATTGCGAATTACAGGTATTTGTCTGTGTCTTTGTCTTGCTCTTGAAGGAAGGTTTTAGCTTTTAGAAACCAGCCTGTTAGATGCTCATATCCTGGTAATGTTGTAGGCATGAAGTAACTGGGCTAACGGAAGAACGTGTAAGGTATGCCATGCCACTGAAAGAAGTCCAAGAAAAAGTATTAAAAATCTTGTTAAATGGAGAAACCATCGAGAGATTGAGAGTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGTGAATTTTCTCTAACTTGGGTTGTAATTATGCGTAGGTTAGTTTCACTTTTATTGAAAATGAGATGCATTTGAACTTTTAAGTGATCTGCATTTGATAACATGATTTTTTCTGGCAATAAATCCTGTCGTTGGGGGATGATAATGTGTTTTTGCTCTGAATTTTACACGACATGCTTCTCTTTTTTTGTGCACATTATTCTTACACATTCACCTTTTGGCTGAAACATTTTCTGCAGGGACACTGCTAGATATACTCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTCGAACATATTTGGGGTAATATTCTTTGGTTCATATTGATTTAAAGAATGATAGGGTAATTTTTCGTTTCTTTCCAACTGAAGCAAGTATTTTATTAATAAACAAACATAAAAACTTCATTATTCTCTACAAAATGGAGGACGAGGGAAGTAAGATATCACCCAGCCAAAAACCTAAACCCCAGGAGTATGTGAAAAGCGACCTCTATCAAAATTATTATTTATTGATACAAAAAGGGAAAAATTATGTAAAACTCTAAACAAATTATTCCAAGTGGGGGTTAGTCCCAGACTGGTCTTTAAAGTTTTTGTTGTTCCTCTCAAGAGTGATATAAAAGCCAACTTAAAGCTCTTGTAAGCTTGTAGGATTTCTCCATGGTATTTTTGCTAGACTATAAACCCGCCATCCAGAGAGGATCTAAGCGAGCAGGAAGGAATTTCACAACACCAACGAAATTATTGCGATTGCACATACATTTTTTTATTAACTCTTTTATGTTTATTCTTAATGCTTATCATTGTGCTCTAATACCTCACGGTCTGTCCATATCTGTTACGCTAGGTATTAGGTTGGGCTTAAAGAATAAATGCGTTCTTTATTAAATCTTAGATTTGTTCTTAATGCTTATCATTGTGCTCTGGTACCTCACGGACTCTCCATATTTGTAACTATAGGTATTAGGCTTGTTCAATGCTTAAAAAGTAACTATACTTTTAAAATGCTTTGGAAAACGTGTTCTAGTGCCGGTAATCAAACCGAGCCTTGGATATCAATAAGAATGAAAAAACTGTATCCAACACATCATCCTAGAATGTTTTTAGTTGAATATGGATTCCTTATTATTTTTTAATAAACTTGTAAGGGTCAAGAAAATGAACTTGAAACCGGCTAAGCTAAGGCTAAGAAGAGCCGCCAAAGGCCAGCTGGCCATTTTCCGCTTCATTGCTAACTCATGAGCAAATCCAATGTTCTGCATCTTCCATATTGAAGAATCAAATTCATTTGGCCTTGTATAGTGTGGTATTTTACACATAAAATTTGATCATGTGGATGGAAAATGAGAGAATGTTGTCTTGGTAGGTGGTAGCATGTTTTTCTCTTTAATCTTGTTTTTAGCTTGTGAAGGATGATCTGTGAGGGCCATGGTTTTGCAGGTATGATATTCGGCAGGGTGTGCACGACCCCTATGAAAATTGTGTATCAGCGATGCGATTGTACAAGAGAATGCGCAGTCTTAATCATCATGGACAAGTTAGGACACCGTTGATTGCTCCTCCCCTTGATCAGTATGTTTCTCACAGTCTTGATTCCTATAGTGCAAAAGATCTTGAGAAGATGACTCCAGATATGCTTTATGAGTTATCGAGATCGAACTTTAAGTGTTGGTGTCTTGACTCGAGATCAGTAATGCAGACTTAGGATCAGATCATTTTCATTTTCTGCTGGGAAGAAAAGGCATAGACAGTACTCATATTGATGGGGAGAGGTGAGGTTGTTGGATGATGAAAAAGGGGGAAATGAGAAGGGAAGGTTGACCTGCTCTTTTGTATCTATCTAGCCTTTCAAGACTTGAAACGATTAAAATGCACCTGTTCTATCGTATATTGGCGTCTTGCCAATTTATGGTTGTGTTTTAGGTCTCTGTTGGTGTTTGTTTCTTGATACAGACGTGTATTGGAATGGAACGGACTTTAGAGGCATCTTTAGAAGTGTTAAATCAAATATGAAAATGATTAAATATTATTTACACTTTTCTTCGAGGGAAAAAATTGATTCTGAGGTTGGCCTACGAACATGGTCTCAG

mRNA sequence

ATGGCAGCTTCTATCACCACCAAAGAATGCCTAAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAGAGTTTCGTATCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCAAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAATGGTCCACTTTCAAAATCAAATTGTTCAAAAATTTTCTTGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGATCGCACATCTCTCAGTGGGCATCAAGACATTTGCCGCTTAACAGCTCCTGTTCGCCAAGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATGGATTGTGTAATGGCTGGCGGTGGAAGTGATGGCACACTGGACATTTGTATTGGGATCTGCCTTGTTGATGAAGACGAGAAATTGATTTTCAATACTTTTGTACAACCACAAATACCAATTGCGAATTACAGGCATGAAGTAACTGGGCTAACGGAAGAACGTGTAAGGTATGCCATGCCACTGAAAGAAGTCCAAGAAAAAGTATTAAAAATCTTGTTAAATGGAGAAACCATCGAGAGATTGAGAGTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGGACACTGCTAGATATACTCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTCGAACATATTTGGGGTATGATATTCGGCAGGGTGTGCACGACCCCTATGAAAATTGTGTATCAGCGATGCGATTGTACAAGAGAATGCGCAGTCTTAATCATCATGGACAAGTTAGGACACCGTTGATTGCTCCTCCCCTTGATCAGTATGTTTCTCACAGTCTTGATTCCTATAGTGCAAAAGATCTTGAGAAGATGACTCCAGATATGCTTTATGAGTTATCGAGATCGAACTTTAAGTGTTGGTGTCTTGACTCGAGATCAGTAATGCAGACTTAGGATCAGATCATTTTCATTTTCTGCTGGGAAGAAAAGGCATAGACAGTACTCATATTGATGGGGAGAGGTGAGGTTGTTGGATGATGAAAAAGGGGGAAATGAGAAGGGAAGGTTGACCTGCTCTTTTGTATCTATCTAGCCTTTCAAGACTTGAAACGATTAAAATGCACCTGTTCTATCGTATATTGGCGTCTTGCCAATTTATGGTTGTGTTTTAGGTCTCTGTTGGTGTTTGTTTCTTGATACAGACGTGTATTGGAATGGAACGGACTTTAGAGGCATCTTTAGAAGTGTTAAATCAAATATGAAAATGATTAAATATTATTTACACTTTTCTTCGAGGGAAAAAATTGATTCTGAGGTTGGCCTACGAACATGGTCTCAG

Coding sequence (CDS)

ATGGCAGCTTCTATCACCACCAAAGAATGCCTAAGACATAAATGCTCTGCATGCTACAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAGAGTTTCGTATCACTCTGTTCATCAGCCTAGATGTGGGGTCTGCCAAAAGCACTGCAAATCATTTGAATCATTGAGGGAACATCTAAATGGTCCACTTTCAAAATCAAATTGTTCAAAAATTTTCTTGGAGCAAGGTTGTGGGCTTTGTTTGAGAGTACTTGATGATCGCACATCTCTCAGTGGGCATCAAGACATTTGCCGCTTAACAGCTCCTGTTCGCCAAGGAACAAGTCTATTGCCAACTGATTTATCAGATTGTTATGATGAAGACCGTTCTGATCGAGGCCTTGGAGCAATAGCTATGGATTGTGTAATGGCTGGCGGTGGAAGTGATGGCACACTGGACATTTGTATTGGGATCTGCCTTGTTGATGAAGACGAGAAATTGATTTTCAATACTTTTGTACAACCACAAATACCAATTGCGAATTACAGGCATGAAGTAACTGGGCTAACGGAAGAACGTGTAAGGTATGCCATGCCACTGAAAGAAGTCCAAGAAAAAGTATTAAAAATCTTGTTAAATGGAGAAACCATCGAGAGATTGAGAGTGAATGGTGGTAAAGCTAGGCTTCTTGTCGGCCATGACTTGGAGCATGATTTAGATTGCTTGAGAATGAATTATCCTGATCATATGTTAAGGGACACTGCTAGATATACTCCATTGATGAAAACAAATTTGGTTAGCCATTCTCTCAAGTACCTTACTCGAACATATTTGGGGTATGATATTCGGCAGGGTGTGCACGACCCCTATGAAAATTGTGTATCAGCGATGCGATTGTACAAGAGAATGCGCAGTCTTAATCATCATGGACAAGTTAGGACACCGTTGATTGCTCCTCCCCTTGATCAGTATGTTTCTCACAGTCTTGATTCCTATAGTGCAAAAGATCTTGAGAAGATGACTCCAGATATGCTTTATGAGTTATCGAGATCGAACTTTAAGTGTTGGTGTCTTGACTCGAGATCAGTAATGCAGACTTAG

Protein sequence

MAASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCSKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHGQVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRSVMQT

Homology

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BLAST of CmaCh02G018110 vs. Swiss-Prot
Match: REXO4_GIBZE (RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.4e-19
Identity = 54/170 (31.76%), Postives = 97/170 (57.06%), Query Frame = 1


Query: 132 IAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVRY 191
           IA+DC M G G  G       + +VD     I++++V+P+  + N+R  V+G++++ +R+
Sbjct: 134 IAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMRF 193

Query: 192 AMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 251
           A   +EVQ ++ K+L              + R+LVGHDL+HDL+ L +++P   +RDTA+
Sbjct: 194 ARDFEEVQAEIDKLL--------------RGRILVGHDLKHDLEALILSHPGKDIRDTAK 253

Query: 252 YTPLMK-TNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 301
           ++   K  N    SL+ L +  LG +I+ G H   E+  + M L+++ +S
Sbjct: 254 FSGFKKYANGRKPSLRVLAQQLLGVEIQGGEHSSIEDARATMLLFRKHKS 289

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BLAST of CmaCh02G018110 vs. Swiss-Prot
Match: REXO4_YEAST (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX4 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-18
Identity = 57/171 (33.33%), Postives = 91/171 (53.22%), Query Frame = 1


Query: 132 IAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVRY 191
           IAMDC   G G +G       I +V+    ++ + FV+P+  +  +R  V+G+  E ++ 
Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKN 181

Query: 192 AMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 251
           A+  KE Q+K   IL              + R+LVGH L+HDL+ L +++P  +LRDT+R
Sbjct: 182 AITFKEAQKKTADIL--------------EGRILVGHALKHDLEALMLSHPKSLLRDTSR 241

Query: 252 YTPLMK--TNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRS 301
           + P  K      + SLK LTR  L   I++G H   E+  + M LYK+ ++
Sbjct: 242 HLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKT 278

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BLAST of CmaCh02G018110 vs. Swiss-Prot
Match: REXO4_HUMAN (RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 8.1e-18
Identity = 57/188 (30.32%), Postives = 100/188 (53.19%), Query Frame = 1


Query: 131 AIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVR 190
           A+A+DC M G G  G   +   + +V++  K +++ +V+P  P+ +YR  V+G+  E ++
Sbjct: 243 ALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLK 302

Query: 191 YAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTA 250
               L+ VQ++V ++L              K R+LVGH L +DL  L +++P   +RDT 
Sbjct: 303 QGEELEVVQKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDTQ 362

Query: 251 RYTPLMKTNLVS--HSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRM-RSLNHHGQV 310
           +Y P  K+ + S   SL+ L+   LG  ++Q  H   ++  +AMRLY  + +      + 
Sbjct: 363 KYKP-FKSQVKSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKEWESMARD 415

Query: 311 RTPLIAPP 316
           R PL+  P
Sbjct: 423 RRPLLTAP 415

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BLAST of CmaCh02G018110 vs. Swiss-Prot
Match: REXO4_KLULA (RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REX4 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-16
Identity = 51/167 (30.54%), Postives = 88/167 (52.69%), Query Frame = 1


Query: 132 IAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVRY 191
           ++MDC   G G DG       + +V+    ++ + FV+P+ P+ ++R  V+G+    +  
Sbjct: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179

Query: 192 AMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 251
           A+  ++ Q++V  +L              K R+LVGH + HDL  L +++P  M+RDT+R
Sbjct: 180 AVTQEDCQKQVSNVL--------------KGRILVGHSVHHDLTALMLSHPRRMIRDTSR 239

Query: 252 YTPLMK--TNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYK 297
           + P  +  +   + SLK LT+  L  DI+ G H   E+  + M LYK
Sbjct: 240 HMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYK 272

[Close]

BLAST of CmaCh02G018110 vs. Swiss-Prot
Match: REXO4_XENLA (RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-16
Identity = 57/176 (32.39%), Postives = 90/176 (51.14%), Query Frame = 1


Query: 122 EDRSDRGLG-AIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHE 181
           ++R+  GL   +AMDC M G G DG   I   + +V+   K +++ +V+P   + +YR  
Sbjct: 224 KERAFEGLTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTA 283

Query: 182 VTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMN 241
           V+G+  E V+   P K VQ++V +IL              + R LVGH + +DL  L ++
Sbjct: 284 VSGIRPEDVKKGEPFKVVQKEVSEIL--------------RGRTLVGHAVHNDLKILFLD 343

Query: 242 YPDHMLRDTARYTPL-MKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLY 296
           +P   +RDT +Y P   K      SLK L    L   ++ G H   ++  +AMRLY
Sbjct: 344 HPKKAIRDTQKYKPFKQKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLY 385

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BLAST of CmaCh02G018110 vs. TrEMBL
Match: I1MCY4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G023300 PE=4 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 2.0e-132
Identity = 230/353 (65.16%), Postives = 278/353 (78.75%), Query Frame = 1


Query: 12  RHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCS 71
           RHKC ACYKQYKKKEHLIEHM+ SYHSVHQPRCGVCQKHCKSFESLREHL GPL +  CS
Sbjct: 14  RHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPRGICS 73

Query: 72  KIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPT-----DLSDCYDEDRSD 131
           KIF +QGC LCL + D   SL  H+ ICR++AP   GTS LP      D  D  DE+ + 
Sbjct: 74  KIFSQQGCQLCLALFDSPGSLIDHRKICRISAPTCPGTSALPYIDSQFDCQDFSDENHAG 133

Query: 132 RGLG-AIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLT 191
            G G A+AMDC M GGGSDG+L++C  +CLVDEDE+LIF+T+VQP+IP+ NYR+++TGLT
Sbjct: 134 EGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPVTNYRYDITGLT 193

Query: 192 EERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHM 251
           EE +R AMPLKEV+EK+L+IL NGE+I ++R++GGKARLLVGHDL HDLDCL+MNYPDHM
Sbjct: 194 EEHLRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNYPDHM 253

Query: 252 LRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNH-- 311
           LRDTA+Y PLMKTNLVSHSLKYLTRTYLGYDI+ G HDPYE+C+S MRLYKR+RS  H  
Sbjct: 254 LRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLYKRIRSQLHPE 313

Query: 312 --HGQVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLD 355
             HG +        L   +    DS+ +++L+ +TPD LY +SRS++KCWCLD
Sbjct: 314 EDHGTM-------TLSNNIVGMPDSWISRELDNLTPDELYAMSRSDYKCWCLD 359

[Close]

BLAST of CmaCh02G018110 vs. TrEMBL
Match: A0A0B2RL39_GLYSO (RNA exonuclease 4 OS=Glycine soja GN=glysoja_022365 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 2.6e-132
Identity = 229/353 (64.87%), Postives = 278/353 (78.75%), Query Frame = 1


Query: 12  RHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCS 71
           RHKC ACYKQYKKKEHLIEHM+ SYHSVHQPRCGVCQKHCKSFESLREHL GPL +  CS
Sbjct: 14  RHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPRGICS 73

Query: 72  KIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPT-----DLSDCYDEDRSD 131
           KIF +QGC LCL + D   SL  H+ ICR++AP   GTS LP      D  D  DE+ + 
Sbjct: 74  KIFSQQGCQLCLALFDSPGSLIDHRKICRISAPTCPGTSALPYIDSQFDCQDSSDENHAG 133

Query: 132 RGLG-AIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLT 191
            G G A+AMDC M GGGSDG+L++C  +CLVDEDE+LIF+T+VQP+IP+ NYR+++TGLT
Sbjct: 134 EGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPVTNYRYDITGLT 193

Query: 192 EERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHM 251
           EE +R AMPLKEV+EK+L+IL NGE+I ++R++GGKARLLVGHDL HD+DCL+MNYPDHM
Sbjct: 194 EEHLRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAHDMDCLKMNYPDHM 253

Query: 252 LRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNH-- 311
           LRDTA+Y PLMKTNLVSHSLKYLTRTYLGYDI+ G HDPYE+C+S MRLYKR+RS  H  
Sbjct: 254 LRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLYKRIRSQLHPE 313

Query: 312 --HGQVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLD 355
             HG +        L   +    DS+ +++L+ +TPD LY +SRS++KCWCLD
Sbjct: 314 EDHGTM-------TLSNNIVGMPDSWISRELDNLTPDELYAMSRSDYKCWCLD 359

[Close]

BLAST of CmaCh02G018110 vs. TrEMBL
Match: C6THA2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G351300 PE=2 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 1.0e-131
Identity = 227/353 (64.31%), Postives = 279/353 (79.04%), Query Frame = 1


Query: 12  RHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCS 71
           RHKC ACYKQYKKKEHLIEHM+ SYHSVHQPRCGVCQKHCKSFESLREHL GPL +  CS
Sbjct: 14  RHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPRGICS 73

Query: 72  KIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPT-----DLSDCYDEDRSD 131
           KIF +QGC LCL + D   SL GH++ CRL+AP   GTS LP      D  D  DE+ + 
Sbjct: 74  KIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTCPGTSALPYIDSQFDCQDSSDENHAG 133

Query: 132 RGLG-AIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLT 191
            G G A+A+DC M GGGSDG+L++C  +CLVDEDE+LIF+T+VQP+IP+ NYR+++TGLT
Sbjct: 134 EGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPVTNYRYDITGLT 193

Query: 192 EERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHM 251
           EE ++ A+PLK+V+EK+L+IL NGE+I ++R++GGKARLLVGHDL HDLDCL+MNYPDHM
Sbjct: 194 EEHLKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNYPDHM 253

Query: 252 LRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNH-- 311
           LRDTA+Y PLMKTNLVSHSLKYLTRTYLGYDI+ G HDPYE+C+S MRLYKR+RS  H  
Sbjct: 254 LRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLYKRIRSQLHPE 313

Query: 312 --HGQVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLD 355
             HG +        L   +    DS+ +++L+ +TPD LY +SRS++KCWCLD
Sbjct: 314 EDHGTM-------TLSNNIVGMPDSWISRELDNLTPDELYAMSRSDYKCWCLD 359

[Close]

BLAST of CmaCh02G018110 vs. TrEMBL
Match: A0A061DXU4_THECC (Exonuclease family protein isoform 1 OS=Theobroma cacao GN=TCM_004453 PE=4 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 7.9e-129
Identity = 217/349 (62.18%), Postives = 275/349 (78.80%), Query Frame = 1


Query: 12  RHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCS 71
           RHKC ACYKQ+K+K HLIEHM++SYHSVHQPRCGVCQKHCKSFES+REH++GPL+KSNCS
Sbjct: 14  RHKCPACYKQFKRKLHLIEHMKISYHSVHQPRCGVCQKHCKSFESVREHISGPLAKSNCS 73

Query: 72  KIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLS------DCYDEDRS 131
           KIFL QGC LCL+VLD   +L+ H+  C L APV  GT ++P   S         DE  +
Sbjct: 74  KIFLNQGCNLCLKVLDSPAALNEHKQKCCLNAPVPLGTKIMPCIESHVILSGSIMDERHN 133

Query: 132 DRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLT 191
            +G GAIA+DC M GGGSDG++D+C  +CLVDEDE LIF+T+VQPQIP++NYR+EVTG+T
Sbjct: 134 GKGHGAIAIDCEMVGGGSDGSIDLCARVCLVDEDENLIFHTYVQPQIPVSNYRYEVTGVT 193

Query: 192 EERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHM 251
           E+ +R AMPL EVQ+K+LKIL NGE++ R+R++G K RLLVGH ++HDLDCLRM YP  +
Sbjct: 194 EDHLRDAMPLNEVQDKILKILYNGESVGRIRLDGEKVRLLVGHGIQHDLDCLRMKYPGQL 253

Query: 252 LRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHG 311
           LRDTA+Y PLMKTNL+SHSLK+LT+TYLGYDI+ G+HDPYE+C+S MRLYKRMR  +H  
Sbjct: 254 LRDTAKYRPLMKTNLLSHSLKHLTKTYLGYDIQSGIHDPYEDCISVMRLYKRMRGQDHQ- 313

Query: 312 QVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLD 355
                 +    ++  +   DS  + +LEK+TPD LYE+S S++KCWCLD
Sbjct: 314 ------VEGLGNERANSGFDSIRSTELEKLTPDELYEISISDYKCWCLD 355

[Close]

BLAST of CmaCh02G018110 vs. TrEMBL
Match: V7BZQ2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G160600g PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 2.3e-128
Identity = 224/357 (62.75%), Postives = 275/357 (77.03%), Query Frame = 1


Query: 11  LRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNC 70
           +RHKC ACYKQ+KKKEHL EHM+ S HSVHQP CGVCQKHCKSFESLREHL GPL K  C
Sbjct: 13  IRHKCPACYKQFKKKEHLTEHMKTSNHSVHQPACGVCQKHCKSFESLREHLTGPLPKGVC 72

Query: 71  SKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPT-----DLSDCYDEDRS 130
           SKIF ++GC LCL + D   SL  H++ CRL+AP R GT  LP      D  D  DE+ +
Sbjct: 73  SKIFSQRGCQLCLVLFDSPGSLVSHRETCRLSAPTRLGTRELPCIDSQFDCLDSSDENHA 132

Query: 131 DRGLG-AIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGL 190
             G G A+ MDC M GGGSDG+L++C  +CLVDEDE LIF+++VQPQIP+ NYR+++TGL
Sbjct: 133 GWGPGGAVGMDCEMVGGGSDGSLELCARVCLVDEDENLIFHSYVQPQIPVTNYRYDITGL 192

Query: 191 TEERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDH 250
           TEE +R AMPL EV+EK+L++L NGE+I ++R+NGGKARLLVGHDL HDLDCL+MNYPDH
Sbjct: 193 TEEHLRNAMPLYEVREKILQMLYNGESIGKVRLNGGKARLLVGHDLAHDLDCLKMNYPDH 252

Query: 251 MLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHH 310
           MLRDTA+Y PLMKTN VSHSLKYLTRTYLGYDI+ G HDPYE+C+S MRLYKR+R+  H 
Sbjct: 253 MLRDTAKYRPLMKTNFVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLYKRIRAQIHP 312

Query: 311 GQV-RTPLIAPPLDQYVSHSL----DSYSAKDLEKMTPDMLYELSRSNFKCWCLDSR 357
            +   TP          SH++    DS+ +++LE +TPD LY +S+S++KCWCLD R
Sbjct: 313 EEAHETP----------SHNIVCVPDSWRSRELENLTPDQLYAMSKSDYKCWCLDLR 359

[Close]

BLAST of CmaCh02G018110 vs. TAIR10
Match: AT2G48100.1 (AT2G48100.1 Exonuclease family protein)

HSP 1 Score: 371.7 bits (953), Expect = 5.1e-103
Identity = 180/352 (51.14%), Postives = 239/352 (67.90%), Query Frame = 1


Query: 8   KECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGP--L 67
           K  +RH+C ACYK + ++EHL+EHM++SYHS+HQPRCGVC KHCKSFES+REHLN P  L
Sbjct: 12  KISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFESVREHLNVPDHL 71

Query: 68  SKSNCSKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRS 127
           SK NC  IF ++GC LCL++ ++  +L+ H++ C L+ P   GTS      S       +
Sbjct: 72  SKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPLGTSTQRNPSSSL-----A 131

Query: 128 DRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLT 187
              L A+A+DC M GGG+DGT+D C  +CLVD+DE +IF+T VQP +P+ +YRHE+TGLT
Sbjct: 132 GSRLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLT 191

Query: 188 EERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHM 247
           +E ++  MPL+ V+E+V   L  G+       +G    LLVGHDL HD+ CL++ YP H+
Sbjct: 192 KEDLKDGMPLEHVRERVFSFLCGGQN------DGAGRLLLVGHDLRHDMSCLKLEYPSHL 251

Query: 248 LRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHG 307
           LRDTA+Y PLMKTNLVS SLKYLT++YLGY I+ G H+ YE+CVSAMRLYKRMR   H  
Sbjct: 252 LRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEHVC 311

Query: 308 QVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRS 358
             +             + L+S    DLEKM  + LY+ S S ++CWCLD  S
Sbjct: 312 SGKAE----------GNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLDRLS 342

[Close]

BLAST of CmaCh02G018110 vs. TAIR10
Match: AT3G27970.1 (AT3G27970.1 Exonuclease family protein)

HSP 1 Score: 362.1 bits (928), Expect = 4.1e-100
Identity = 175/359 (48.75%), Postives = 245/359 (68.25%), Query Frame = 1


Query: 3   ASITTKECLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLN 62
           +S+ + E LR+KC+ACY+Q+ K EHL+EHM++SYHS H+P CGVC+KHC+SFESLREHL 
Sbjct: 5   SSMESSETLRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLREHLI 64

Query: 63  GPLSKSNCSKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQG--TSLLPTDLSDC- 122
           GPL K  C  IF  +GC  C+ +L+   S   HQ+ C+ ++ V  G  T +    L D  
Sbjct: 65  GPLPKQECKNIFSLRGCRFCMTILESPNSRRIHQERCQFSS-VNSGLTTRMAALGLRDKA 124

Query: 123 ---YDEDRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIAN 182
              Y   RS R    +A+ C M GGGSDG+LD+C  +C+ DE + +IF+T+V+P + + +
Sbjct: 125 MIDYTSSRSPR---VVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTS 184

Query: 183 YRHEVTGLTEERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDC 242
           YR+E TG+  E +R AMPLK+VQ K+ + L NGE + ++R  GGKAR+LVGH L+HDLD 
Sbjct: 185 YRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDR 244

Query: 243 LRMNYPDHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYK 302
           L++ YP  M+RDTA+Y PLMKT+ +S+SLKYLT+ YLGYD+  G+ DPYE+CV+ MRLY 
Sbjct: 245 LQLEYPSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYT 304

Query: 303 RMRSLNHHGQVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDS 356
           RMR   H  +   PL A   D     +  ++   + E+M+PD +  +SRS++ CWCLDS
Sbjct: 305 RMRYQKHKIEA-YPLAA---DAQNRSNQVAWRQSEAERMSPDEMLSISRSDYYCWCLDS 355

[Close]

BLAST of CmaCh02G018110 vs. TAIR10
Match: AT5G40310.1 (AT5G40310.1 Exonuclease family protein)

HSP 1 Score: 355.9 bits (912), Expect = 2.9e-98
Identity = 169/349 (48.42%), Postives = 235/349 (67.34%), Query Frame = 1


Query: 12  RHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNCS 71
           R+KC  CY+Q+ KKEHL+EHMR+SYHSVH+P CG+C KHC+SF+SLREHL GPL K  C 
Sbjct: 5   RNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHLIGPLPKQECK 64

Query: 72  KIFLEQGCGLCLRVLDDRTSLSGHQDICRLT-----APVRQGTSLLPTDLSDCYDEDRSD 131
            IF  +GC  CL +L+   +   HQ+ C+L+       +R     L  + +  Y   RS 
Sbjct: 65  NIFSIRGCRFCLTILESPNARRIHQERCQLSNVTSGLMIRMAALGLRNNSTIDYTSSRSP 124

Query: 132 RGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTE 191
           R    +A+ C M GGGSDG+LD+C  +C+ DE E ++F+T+V+P IP+ NYR+E+TG+  
Sbjct: 125 R---VVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRP 184

Query: 192 ERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHML 251
           E +R AM LK  Q KV + L NGE + ++R   GKAR+LVGH L++ LD L++ Y   M+
Sbjct: 185 ENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMI 244

Query: 252 RDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHGQ 311
           RDTA Y PLMK++ +S+SLKYLT+ YLGYDI  G+ DPYE+CV+ MRLY RMR   H  +
Sbjct: 245 RDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRMRYQKHRAE 304

Query: 312 VRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDS 356
              PL +   D    ++  ++   +LE+M+P+ L +LSRS++ CWCLDS
Sbjct: 305 A-YPLAS---DTQNHNNFAAWRQNELERMSPEELLDLSRSDYYCWCLDS 346

[Close]

BLAST of CmaCh02G018110 vs. TAIR10
Match: AT3G15080.1 (AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-17
Identity = 53/168 (31.55%), Postives = 87/168 (51.79%), Query Frame = 1


Query: 132 IAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVRY 191
           +AMDC M G  S GT      + LV++   ++++ FV+P   + ++R  ++G+    +R 
Sbjct: 84  VAMDCEMVGV-SQGTKSALGRVTLVNKWGNVLYDEFVRPVEHVVDFRTSISGIRPRDLRK 143

Query: 192 AMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTAR 251
           A   +  Q KV +++              K ++LVGH L +DL  L + +P   +RDT  
Sbjct: 144 AKDFRVAQTKVAELI--------------KGKILVGHALHNDLKALLLTHPKKDIRDTGE 203

Query: 252 YTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMR 300
           Y P +K      SLK+L    LG DI+ G H P ++  +AM LY++ R
Sbjct: 204 YQPFLKGK-TRKSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNR 235

[Close]

BLAST of CmaCh02G018110 vs. TAIR10
Match: AT3G50100.1 (AT3G50100.1 small RNA degrading nuclease 1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-12
Identity = 54/169 (31.95%), Postives = 91/169 (53.85%), Query Frame = 1


Query: 132 IAMDC--VMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERV 191
           +A+DC  V+   G++G + + +    VD D K+I + FV+P  P+ +YR ++TG+T E +
Sbjct: 141 VAVDCEMVLCEDGTEGLVRVGV----VDRDLKVILDEFVKPNKPVVDYRTDITGITAEDI 200

Query: 192 RYA-MPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRD 251
             A + + ++QE +   L  G              +LVGH L  DL+ L++++P   + D
Sbjct: 201 ENASLSVVDIQETLQPFLSTG-------------TILVGHSLNRDLEVLKIDHP--KVID 260

Query: 252 TARYTPLMKT-NLVSHSLKYLTRTYLGYDIRQ-GV-HDPYENCVSAMRL 295
           TA       T  L   SL  L ++ LGY++R+ GV HD   +  +AM+L
Sbjct: 261 TALVFKYPNTRKLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKL 290

[Close]

BLAST of CmaCh02G018110 vs. NCBI nr
Match: gi|778694140|ref|XP_011653750.1| (PREDICTED: apoptosis-enhancing nuclease isoform X1 [Cucumis sativus])

HSP 1 Score: 626.7 bits (1615), Expect = 2.5e-176
Identity = 302/351 (86.04%), Postives = 317/351 (90.31%), Query Frame = 1


Query: 11  LRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNC 70
           LRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVC KHCKSFESLREHL GPLSKSNC
Sbjct: 13  LRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREHLMGPLSKSNC 72

Query: 71  SKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRSDRGLG 130
           SKIF EQGCGLCLRVLD   SLS HQDIC +TAPV QGTSL PTDLSDCY+EDRSDRGLG
Sbjct: 73  SKIFSEQGCGLCLRVLDGPESLSDHQDICCITAPVHQGTSLPPTDLSDCYEEDRSDRGLG 132

Query: 131 AIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVR 190
           AIA+DCVMAGGGSDG LDIC+ ICLVDEDEKLIFNTFVQPQIPI NYRHEVTGL EE +R
Sbjct: 133 AIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFNTFVQPQIPITNYRHEVTGLKEEHMR 192

Query: 191 YAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTA 250
           YAMPLK VQEKVLK+LLNGE+I RLR+NGGKA+LLVGHDLEHDLDCLR+NYPDHMLRDTA
Sbjct: 193 YAMPLKNVQEKVLKLLLNGESIGRLRLNGGKAKLLVGHDLEHDLDCLRLNYPDHMLRDTA 252

Query: 251 RYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHGQVRTP 310
           RY PLMKTNLVSHSLKYLTR YLGYDIRQ  HDPYENCVS MRLYKRMRSL+HH QV T 
Sbjct: 253 RYHPLMKTNLVSHSLKYLTRAYLGYDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTL 312

Query: 311 LIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRSVMQT 362
            I P   QYV+ +LDS+SAKDLEKMTPD LYE+SRSNFKCWC DSR VMQT
Sbjct: 313 SITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT 363

[Close]

BLAST of CmaCh02G018110 vs. NCBI nr
Match: gi|659111761|ref|XP_008455895.1| (PREDICTED: uncharacterized protein LOC103495972 isoform X1 [Cucumis melo])

HSP 1 Score: 612.1 bits (1577), Expect = 6.4e-172
Identity = 296/351 (84.33%), Postives = 313/351 (89.17%), Query Frame = 1


Query: 11  LRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNC 70
           LRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVC KHCKSFESLRE+L GPLSKS+C
Sbjct: 13  LRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREYLMGPLSKSSC 72

Query: 71  SKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRSDRGLG 130
           SKIF EQGCGLCLRVLD   +LS H +IC +TAPV QGTSLLPTDLSDCY+EDRSDRGLG
Sbjct: 73  SKIFSEQGCGLCLRVLDSPKTLSEHLNICCITAPVHQGTSLLPTDLSDCYEEDRSDRGLG 132

Query: 131 AIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVR 190
           AIAMDCVMAGGGSDG LDIC+ ICLVDE EKLIFNTFVQPQIPI NYRHEVTGL EE +R
Sbjct: 133 AIAMDCVMAGGGSDGALDICVWICLVDEHEKLIFNTFVQPQIPITNYRHEVTGLKEEHLR 192

Query: 191 YAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTA 250
           YAMPL+ VQEKVLK+LLNGE+I RLR NGGKA+LLVGHDLEHDLD LRMNYPDHMLRDTA
Sbjct: 193 YAMPLRNVQEKVLKLLLNGESIGRLRSNGGKAKLLVGHDLEHDLDYLRMNYPDHMLRDTA 252

Query: 251 RYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHGQVRTP 310
           RY PL+KTNLVSHSLKYLTR YLGYDIRQ  HDPYENCVS MRLYKRMRSL+H  QV TP
Sbjct: 253 RYHPLIKTNLVSHSLKYLTRAYLGYDIRQDGHDPYENCVSVMRLYKRMRSLDHRRQVMTP 312

Query: 311 LIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRSVMQT 362
               P  QYV+ +LDSYSAKDLEKMTPD LYE+SRSNFKCWC DSR VMQT
Sbjct: 313 SATSPYIQYVAPNLDSYSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT 363

[Close]

BLAST of CmaCh02G018110 vs. NCBI nr
Match: gi|449449811|ref|XP_004142658.1| (PREDICTED: apoptosis-enhancing nuclease isoform X2 [Cucumis sativus])

HSP 1 Score: 594.7 bits (1532), Expect = 1.1e-166
Identity = 290/351 (82.62%), Postives = 306/351 (87.18%), Query Frame = 1


Query: 11  LRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCQKHCKSFESLREHLNGPLSKSNC 70
           LRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVC KHCKSFESLREHL         
Sbjct: 13  LRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLREHL--------- 72

Query: 71  SKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCYDEDRSDRGLG 130
               +EQGCGLCLRVLD   SLS HQDIC +TAPV QGTSL PTDLSDCY+EDRSDRGLG
Sbjct: 73  ----MEQGCGLCLRVLDGPESLSDHQDICCITAPVHQGTSLPPTDLSDCYEEDRSDRGLG 132

Query: 131 AIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVTGLTEERVR 190
           AIA+DCVMAGGGSDG LDIC+ ICLVDEDEKLIFNTFVQPQIPI NYRHEVTGL EE +R
Sbjct: 133 AIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFNTFVQPQIPITNYRHEVTGLKEEHMR 192

Query: 191 YAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYPDHMLRDTA 250
           YAMPLK VQEKVLK+LLNGE+I RLR+NGGKA+LLVGHDLEHDLDCLR+NYPDHMLRDTA
Sbjct: 193 YAMPLKNVQEKVLKLLLNGESIGRLRLNGGKAKLLVGHDLEHDLDCLRLNYPDHMLRDTA 252

Query: 251 RYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLNHHGQVRTP 310
           RY PLMKTNLVSHSLKYLTR YLGYDIRQ  HDPYENCVS MRLYKRMRSL+HH QV T 
Sbjct: 253 RYHPLMKTNLVSHSLKYLTRAYLGYDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTL 312

Query: 311 LIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRSVMQT 362
            I P   QYV+ +LDS+SAKDLEKMTPD LYE+SRSNFKCWC DSR VMQT
Sbjct: 313 SITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT 350

[Close]

BLAST of CmaCh02G018110 vs. NCBI nr
Match: gi|659069342|ref|XP_008449328.1| (PREDICTED: RNA exonuclease 4-like [Cucumis melo])

HSP 1 Score: 514.6 bits (1324), Expect = 1.4e-142
Identity = 249/299 (83.28%), Postives = 265/299 (88.63%), Query Frame = 1


Query: 63  GPLSKSNCSKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCYDE 122
           GPLSKSNCSKIF EQGCGLCLRVLD   +LS HQDIC +TAPV QGTSL PTDLSDCY+E
Sbjct: 2   GPLSKSNCSKIFSEQGCGLCLRVLDGPETLSEHQDICCITAPVHQGTSLPPTDLSDCYEE 61

Query: 123 DRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVT 182
           DRSDRGLGAIAMDCVMAGGGSDG LDIC+ ICLVDEDEKLIFNTFVQPQIPI NYRHEVT
Sbjct: 62  DRSDRGLGAIAMDCVMAGGGSDGALDICVWICLVDEDEKLIFNTFVQPQIPITNYRHEVT 121

Query: 183 GLTEERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYP 242
           GL EE +RYAMPLK VQEKVLK+LLNGE+I +LR NGGKA+LLVGHDLEHDLDCLRMNYP
Sbjct: 122 GLKEEHMRYAMPLKNVQEKVLKLLLNGESIGKLRSNGGKAKLLVGHDLEHDLDCLRMNYP 181

Query: 243 DHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLN 302
           DHMLRDTARY PLMKTNLVSHSLKYLTR YLGYDIRQ  HDPYENCVS MRLYKRMRSL+
Sbjct: 182 DHMLRDTARYHPLMKTNLVSHSLKYLTRAYLGYDIRQDGHDPYENCVSVMRLYKRMRSLD 241

Query: 303 HHGQVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRSVMQT 362
           H  QV T  + P   QYV+ +LDS+SAKDLEKMTPD LYE+SR+NFKCWC DSR VMQT
Sbjct: 242 HRRQVMTLSVTPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRTNFKCWCHDSRRVMQT 300

[Close]

BLAST of CmaCh02G018110 vs. NCBI nr
Match: gi|659131022|ref|XP_008465475.1| (PREDICTED: RNA exonuclease 4-like [Cucumis melo])

HSP 1 Score: 511.5 bits (1316), Expect = 1.2e-141
Identity = 249/299 (83.28%), Postives = 264/299 (88.29%), Query Frame = 1


Query: 63  GPLSKSNCSKIFLEQGCGLCLRVLDDRTSLSGHQDICRLTAPVRQGTSLLPTDLSDCYDE 122
           GPLSKSNCSKIF EQGCGLCLRVLD   +LS HQDIC +TAPV QGTSL PTDLSD Y+E
Sbjct: 2   GPLSKSNCSKIFSEQGCGLCLRVLDGPETLSEHQDICCITAPVHQGTSLPPTDLSDGYEE 61

Query: 123 DRSDRGLGAIAMDCVMAGGGSDGTLDICIGICLVDEDEKLIFNTFVQPQIPIANYRHEVT 182
           DRSDRGLGAIAMDCVMAGGGSDG LDIC+ ICLVDEDEKLIFNTFVQPQIPI NYRHEVT
Sbjct: 62  DRSDRGLGAIAMDCVMAGGGSDGALDICVWICLVDEDEKLIFNTFVQPQIPITNYRHEVT 121

Query: 183 GLTEERVRYAMPLKEVQEKVLKILLNGETIERLRVNGGKARLLVGHDLEHDLDCLRMNYP 242
           GL EE +RYAMPLK VQEKVLK+LLNGE+I RLR NGGKA+LLVGHDLEHDLDCLRMNYP
Sbjct: 122 GLKEEHLRYAMPLKNVQEKVLKLLLNGESIGRLRSNGGKAKLLVGHDLEHDLDCLRMNYP 181

Query: 243 DHMLRDTARYTPLMKTNLVSHSLKYLTRTYLGYDIRQGVHDPYENCVSAMRLYKRMRSLN 302
           DHMLRDTARY PLMKTNLVSHSLKYLTR YLGYDIRQ  HDPYENCVS MRLYKRMRSL+
Sbjct: 182 DHMLRDTARYHPLMKTNLVSHSLKYLTRAYLGYDIRQDGHDPYENCVSVMRLYKRMRSLD 241

Query: 303 HHGQVRTPLIAPPLDQYVSHSLDSYSAKDLEKMTPDMLYELSRSNFKCWCLDSRSVMQT 362
           H  QV T  + P   QYV+ +LDS+SAKDLEKMTPD LYE+SR+NFKCWC DSR VMQT
Sbjct: 242 HRRQVMTRSVTPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRTNFKCWCHDSRRVMQT 300

The following BLAST results are available for this feature:

BLAST of CmaCh02G018110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
REXO4_GIBZE	7.4e-19	31.76	RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / ...	[more]
REXO4_YEAST	1.6e-18	33.33	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RE...	[more]
REXO4_HUMAN	8.1e-18	30.32	RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2	[more]
REXO4_KLULA	1.2e-16	30.54	RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707...	[more]
REXO4_XENLA	1.2e-16	32.39	RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2	[more]

BLAST of CmaCh02G018110 vs. TrEMBL


Match Name	E-value	Identity	Description
I1MCY4_SOYBN	2.0e-132	65.16	Uncharacterized protein OS=Glycine max GN=GLYMA_15G023300 PE=4 SV=1	[more]
A0A0B2RL39_GLYSO	2.6e-132	64.87	RNA exonuclease 4 OS=Glycine soja GN=glysoja_022365 PE=4 SV=1	[more]
C6THA2_SOYBN	1.0e-131	64.31	Uncharacterized protein OS=Glycine max GN=GLYMA_13G351300 PE=2 SV=1	[more]
A0A061DXU4_THECC	7.9e-129	62.18	Exonuclease family protein isoform 1 OS=Theobroma cacao GN=TCM_004453 PE=4 SV=1	[more]
V7BZQ2_PHAVU	2.3e-128	62.75	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G160600g PE=4 SV=1	[more]

BLAST of CmaCh02G018110 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G48100.1	5.1e-103	51.14	Exonuclease family protein	[more]
AT3G27970.1	4.1e-100	48.75	Exonuclease family protein	[more]
AT5G40310.1	2.9e-98	48.42	Exonuclease family protein	[more]
AT3G15080.1	2.5e-17	31.55	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G50100.1	1.4e-12	31.95	small RNA degrading nuclease 1	[more]

BLAST of CmaCh02G018110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694140\|ref\|XP_011653750.1\|	2.5e-176	86.04	PREDICTED: apoptosis-enhancing nuclease isoform X1 [Cucumis sativus]	[more]
gi\|659111761\|ref\|XP_008455895.1\|	6.4e-172	84.33	PREDICTED: uncharacterized protein LOC103495972 isoform X1 [Cucumis melo]	[more]
gi\|449449811\|ref\|XP_004142658.1\|	1.1e-166	82.62	PREDICTED: apoptosis-enhancing nuclease isoform X2 [Cucumis sativus]	[more]
gi\|659069342\|ref\|XP_008449328.1\|	1.4e-142	83.28	PREDICTED: RNA exonuclease 4-like [Cucumis melo]	[more]
gi\|659131022\|ref\|XP_008465475.1\|	1.2e-141	83.28	PREDICTED: RNA exonuclease 4-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2
IPR012337	RNaseH-like_sf
IPR013520	Exonuclease_RNaseT/DNA_pol3

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G018110.1	CmaCh02G018110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 15..37 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 13..42 score: 11
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 131..304 score: 2.0
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 132..301 score: 8.76
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 148..284 score: 9.
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 130..304 score: 8.2
None	No IPR available	PANTHER	PTHR12801	EXONUCLEASE	coord: 11..355 score: 1.3E
None	No IPR available	PANTHER	PTHR12801:SF66	EXONUCLEASE-LIKE PROTEIN	coord: 11..355 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G018110	CmoCh02G018570	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G018110	Cp4.1LG05g01760	Cucurbita pepo (Zucchini)	cmacpeB647
CmaCh02G018110	Carg26560	Silver-seed gourd	carcmaB1290

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G018110	Cucumber (Gy14) v2	cgybcmaB818
CmaCh02G018110	Melon (DHL92) v3.6.1	cmamedB659
CmaCh02G018110	Silver-seed gourd	carcmaB1051
CmaCh02G018110	Cucumber (Chinese Long) v3	cmacucB0750
CmaCh02G018110	Watermelon (97103) v2	cmawmbB655
CmaCh02G018110	Watermelon (97103) v2	cmawmbB657
CmaCh02G018110	Wax gourd	cmawgoB0730
CmaCh02G018110	Wax gourd	cmawgoB0741
CmaCh02G018110	Cucurbita maxima (Rimu)	cmacmaB450
CmaCh02G018110	Cucurbita moschata (Rifu)	cmacmoB598
CmaCh02G018110	Wild cucumber (PI 183967)	cmacpiB632
CmaCh02G018110	Cucumber (Chinese Long) v2	cmacuB628
CmaCh02G018110	Melon (DHL92) v3.5.1	cmameB577
CmaCh02G018110	Watermelon (Charleston Gray)	cmawcgB567
CmaCh02G018110	Watermelon (Charleston Gray)	cmawcgB568
CmaCh02G018110	Watermelon (97103) v1	cmawmB558
CmaCh02G018110	Watermelon (97103) v1	cmawmB563
CmaCh02G018110	Cucurbita pepo (Zucchini)	cmacpeB615
CmaCh02G018110	Bottle gourd (USVL1VR-Ls)	cmalsiB582