CmaCh02G017450 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh02G017450
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionProtein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
LocationCma_Chr02 : 9781765 .. 9782322 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCCATCACTGAATTTGAAGGCCTCAACGCCCAACAATTTGGAGGCTCCAGTGTTCCAAATTTAGGTGGTGGGTCGTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCAAACAGCCGCTATGAGAACCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTGAAAAATCACCGACCCCCACTTACCCTTTCAAGGTGTAGCGGAGCTCATGTTCTTGAATTCCTTCGGTATTTGGACCAATTTGGTAAGACCAAAGTCCACACTCCGATCTGCCCTTTCTACGGCCATCCCAACCCTCCAGCCCCATGTCCCTGCCCTCTCCGCCAAGCATGGGGCAGCCTGGATTCCCTTATTGGCCGCCTTCGTGCAGCCTTTGAAGAGAACGGTGGGATGCCGGAAGCTAACCCCTTTGGTGCCCGTGCTATTAGGCTTTATCTTCGAGAGGTTCGTGATGTGCAGTCTAAGGCAAGAGGAATTAGCTATGAGAAGAAGAAACGAAAGCGCCCTCAACAACAAATCCTTCCACCTCCCACAGGAGCTTAA

mRNA sequence

ATGGACTCCATCACTGAATTTGAAGGCCTCAACGCCCAACAATTTGGAGGCTCCAGTGTTCCAAATTTAGGTGGTGGGTCGTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCAAACAGCCGCTATGAGAACCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTGAAAAATCACCGACCCCCACTTACCCTTTCAAGGTGTAGCGGAGCTCATGTTCTTGAATTCCTTCGGTATTTGGACCAATTTGGTAAGACCAAAGTCCACACTCCGATCTGCCCTTTCTACGGCCATCCCAACCCTCCAGCCCCATGTCCCTGCCCTCTCCGCCAAGCATGGGGCAGCCTGGATTCCCTTATTGGCCGCCTTCGTGCAGCCTTTGAAGAGAACGGTGGGATGCCGGAAGCTAACCCCTTTGGTGCCCGTGCTATTAGGCTTTATCTTCGAGAGGTTCGTGATGTGCAGTCTAAGGCAAGAGGAATTAGCTATGAGAAGAAGAAACGAAAGCGCCCTCAACAACAAATCCTTCCACCTCCCACAGGAGCTTAA

Coding sequence (CDS)

ATGGACTCCATCACTGAATTTGAAGGCCTCAACGCCCAACAATTTGGAGGCTCCAGTGTTCCAAATTTAGGTGGTGGGTCGTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCAAACAGCCGCTATGAGAACCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTGAAAAATCACCGACCCCCACTTACCCTTTCAAGGTGTAGCGGAGCTCATGTTCTTGAATTCCTTCGGTATTTGGACCAATTTGGTAAGACCAAAGTCCACACTCCGATCTGCCCTTTCTACGGCCATCCCAACCCTCCAGCCCCATGTCCCTGCCCTCTCCGCCAAGCATGGGGCAGCCTGGATTCCCTTATTGGCCGCCTTCGTGCAGCCTTTGAAGAGAACGGTGGGATGCCGGAAGCTAACCCCTTTGGTGCCCGTGCTATTAGGCTTTATCTTCGAGAGGTTCGTGATGTGCAGTCTAAGGCAAGAGGAATTAGCTATGAGAAGAAGAAACGAAAGCGCCCTCAACAACAAATCCTTCCACCTCCCACAGGAGCTTAA

Protein sequence

MDSITEFEGLNAQQFGGSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDSLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQQILPPPTGA
Homology
[Close]
BLAST of CmaCh02G017450 vs. Swiss-Prot
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 5.6e-71
Identity = 136/166 (81.93%), Postives = 145/166 (87.35%), Query Frame = 1 

Query: 10  LNAQQFGGSSVPNLGGGSSSSSSSSSSSSSSNS-RYENQKRRDWNTFCQYLKNHRPPLTL 69
           LN      SSV    GG ++   SSSSS S+NS RYENQKRRDWNTF QYL+NHRPPL+L
Sbjct: 20  LNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSL 79

Query: 70  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDSLIGRLRA 129
           SRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHPNPPAPCPCPLRQAWGSLD+LIGRLRA
Sbjct: 80  SRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 139

Query: 130 AFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRP 175
           AFEENGG PE NPFGARA+RLYLREVRD+QSKARG+SYEKKKRKRP
Sbjct: 140 AFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]
BLAST of CmaCh02G017450 vs. Swiss-Prot
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.1e-70
Identity = 131/156 (83.97%), Postives = 140/156 (89.74%), Query Frame = 1 

Query: 27  SSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLTLSRCSGAHVLEFLRYLDQF 86
           SSSSSSS  S ++  SRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQF
Sbjct: 32  SSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQF 91

Query: 87  GKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDSLIGRLRAAFEENGGMPEANPFGARA 146
           GKTKVHT +CPF+GHPNPPAPC CPLRQAWGSLD+LIGRLRAAFEENGG PE NPFGARA
Sbjct: 92  GKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARA 151

Query: 147 IRLYLREVRDVQSKARGISYEKKKRKRPQQQILPPP 183
           +RLYLREVRD Q+KARGISYEKKKRKRP     PPP
Sbjct: 152 VRLYLREVRDSQAKARGISYEKKKRKRP-----PPP 182

[Close]
BLAST of CmaCh02G017450 vs. Swiss-Prot
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.0e-69
Identity = 132/186 (70.97%), Postives = 150/186 (80.65%), Query Frame = 1 

Query: 12  AQQFGGSSVPNLGGGSSSSSS----SSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLT 71
           A  F G+   + G G+S+       S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+
Sbjct: 45  AAMFSGAGSSSSGAGTSAGGGGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLS 104

Query: 72  LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDSLIGRLR 131
           LSRCSGAHVLEFL+Y+DQFGKTKVHTP+CPFYGHPNPPAPCPCPLRQAWGSLD+LIGRLR
Sbjct: 105 LSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLR 164

Query: 132 AAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKR---------PQQQI 185
           AA+EENGG PE NPFGARA+RLYLREVR+ Q++ARGISYEKKKRK+         P  + 
Sbjct: 165 AAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYEKKKRKKPSSAGAGAGPSSEG 224

[Close]
BLAST of CmaCh02G017450 vs. Swiss-Prot
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.0e-69
Identity = 132/186 (70.97%), Postives = 150/186 (80.65%), Query Frame = 1 

Query: 12  AQQFGGSSVPNLGGGSSSSSS----SSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLT 71
           A  F G+   + G G+S+       S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+
Sbjct: 45  AAMFSGAGSSSSGAGTSAGGGGGGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLS 104

Query: 72  LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDSLIGRLR 131
           LSRCSGAHVLEFL+Y+DQFGKTKVHTP+CPFYGHPNPPAPCPCPLRQAWGSLD+LIGRLR
Sbjct: 105 LSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLR 164

Query: 132 AAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKR---------PQQQI 185
           AA+EENGG PE NPFGARA+RLYLREVR+ Q++ARGISYEKKKRK+         P  + 
Sbjct: 165 AAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYEKKKRKKPSSAGAGAGPSSEG 224

[Close]
BLAST of CmaCh02G017450 vs. Swiss-Prot
Match: G1L4_ORYSJ (Protein G1-like4 OS=Oryza sativa subsp. japonica GN=G1L4 PE=1 SV=2)

HSP 1 Score: 258.5 bits (659), Expect = 5.7e-68
Identity = 132/185 (71.35%), Postives = 149/185 (80.54%), Query Frame = 1 

Query: 22  NLGGGSSSSSSSSSSSSS----SNSRYENQKRRDWNTFCQYLKNHRPPLTLSRCSGAHVL 81
           N GGG SSSS+SS S  +    S SRYE QKRRDWNTF QYL+NHRPPL+L++CSGAHVL
Sbjct: 16  NGGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVL 75

Query: 82  EFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDSLIGRLRAAFEENGGMP 141
           EFLRYLDQFGKTKVHT  CPF+GHP+PPAPCPCPLRQAWGSLD+L+GRLRAAFEENGG P
Sbjct: 76  EFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRP 135

Query: 142 EANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQQIL-----------------P 186
           E+NPF ARA+RLYLREVR+ Q++ARG+SYEKKKRK+PQQQ L                 P
Sbjct: 136 ESNPFAARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQLQGGDSSGLHGHQHHPPPP 195

[Close]
BLAST of CmaCh02G017450 vs. TrEMBL
Match: A0A0A0LB62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383780 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.5e-78
Identity = 158/185 (85.41%), Postives = 165/185 (89.19%), Query Frame = 1 

Query: 1   MDSI-TEFEGLNA---QQFG----GSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDW 60
           MDSI +EFE LN    Q FG     +++ NL  GSSSSSSSSSSSS    RYENQKRRDW
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSS----RYENQKRRDW 60

Query: 61  NTFCQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL 120
           NTFCQYLKNHRPPL LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL
Sbjct: 61  NTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL 120

Query: 121 RQAWGSLDSLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRK 178
           RQAWGSLD+LIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRK
Sbjct: 121 RQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRK 180

[Close]
BLAST of CmaCh02G017450 vs. TrEMBL
Match: B9GS06_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03860g PE=4 SV=2)

HSP 1 Score: 293.5 bits (750), Expect = 1.8e-76
Identity = 151/194 (77.84%), Postives = 165/194 (85.05%), Query Frame = 1 

Query: 1   MDSITEFEGLNAQQFGGSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60
           M+SI E E  N++    +++ N     S S+SSS SSS++ SRYENQKRRDWNTF QYLK
Sbjct: 1   MNSIPEMENSNSENISFNNIGNSPTAMSVSNSSSPSSSTAPSRYENQKRRDWNTFGQYLK 60

Query: 61  NHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 SLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKR-PQQQI- 180
           +LIGRLRAAFEENGG PEANPFGARA+RLYLREVRD+QSKARG+SYEKKKRKR PQQQI 
Sbjct: 121 ALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGVSYEKKKRKRPPQQQIQ 180

Query: 181 -------LPPPTGA 186
                  LPPP GA
Sbjct: 181 SLPLPLPLPPPPGA 194

[Close]
BLAST of CmaCh02G017450 vs. TrEMBL
Match: A0A061DNN8_THECC (IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.3e-76
Identity = 153/188 (81.38%), Postives = 163/188 (86.70%), Query Frame = 1 

Query: 1   MDSITEFEGLNAQQFGGSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60
           MDSI E +  N++     +V N G  S +SSSS SSSS+S SRYENQKRRDWNTF QYLK
Sbjct: 1   MDSIREMDSSNSEN-ASLNVSNNGTASLASSSSPSSSSTS-SRYENQKRRDWNTFGQYLK 60

Query: 61  NHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 SLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQQ--- 180
           +LIGRLRAAFEENGG PEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRP  Q   
Sbjct: 121 ALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPAQQIP 180

Query: 181 ILPPPTGA 186
            LPPP GA
Sbjct: 181 TLPPPPGA 186

[Close]
BLAST of CmaCh02G017450 vs. TrEMBL
Match: A0A0D2QFS1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G178100 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 5.8e-75
Identity = 149/192 (77.60%), Postives = 159/192 (82.81%), Query Frame = 1 

Query: 1   MDSITEFEGLNAQQFGGSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60
           MDSI E +  N++     +V N GG S  SSSSS +SS    RYENQKRRDWNTF QYLK
Sbjct: 1   MDSIRETDSSNSENVSLINVSNNGGTSLPSSSSSPTSS----RYENQKRRDWNTFGQYLK 60

Query: 61  NHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPP PCPCPLRQAWGSLD
Sbjct: 61  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPVPCPCPLRQAWGSLD 120

Query: 121 SLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQQIL- 180
           +LIGRLRAAFEENGG PE NPFGARA+RLYLREVRD+QSKARGISYEKKKRKRP  Q + 
Sbjct: 121 ALIGRLRAAFEENGGKPEVNPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPAQQIP 180

Query: 181 ------PPPTGA 186
                 PPPTGA
Sbjct: 181 TLPLPPPPPTGA 188

[Close]
BLAST of CmaCh02G017450 vs. TrEMBL
Match: F6HZL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03530 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 7.5e-75
Identity = 147/187 (78.61%), Postives = 163/187 (87.17%), Query Frame = 1 

Query: 1   MDSITEFEGLNAQQFGGSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60
           MDSI E +  N++    ++  N     SS+++SSSS+S++ SRYENQKRRDWNTF QYLK
Sbjct: 1   MDSIPEMDSSNSENTSINTSSN-----SSAATSSSSASTTPSRYENQKRRDWNTFGQYLK 60

Query: 61  NHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 SLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRPQQQILP 180
           +LIGRLRAAFEENGG PEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKR  QQ+ P
Sbjct: 121 ALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRLPQQMPP 180

Query: 181 --PPTGA 186
             PP GA
Sbjct: 181 QLPPPGA 182

[Close]
BLAST of CmaCh02G017450 vs. TAIR10
Match: AT2G31160.1 (AT2G31160.1 Protein of unknown function (DUF640))

HSP 1 Score: 268.5 bits (685), Expect = 3.1e-72
Identity = 136/166 (81.93%), Postives = 145/166 (87.35%), Query Frame = 1 

Query: 10  LNAQQFGGSSVPNLGGGSSSSSSSSSSSSSSNS-RYENQKRRDWNTFCQYLKNHRPPLTL 69
           LN      SSV    GG ++   SSSSS S+NS RYENQKRRDWNTF QYL+NHRPPL+L
Sbjct: 20  LNIISNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSL 79

Query: 70  SRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDSLIGRLRA 129
           SRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHPNPPAPCPCPLRQAWGSLD+LIGRLRA
Sbjct: 80  SRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRA 139

Query: 130 AFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRP 175
           AFEENGG PE NPFGARA+RLYLREVRD+QSKARG+SYEKKKRKRP
Sbjct: 140 AFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]
BLAST of CmaCh02G017450 vs. TAIR10
Match: AT3G23290.2 (AT3G23290.2 Protein of unknown function (DUF640))

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-71
Identity = 131/156 (83.97%), Postives = 140/156 (89.74%), Query Frame = 1 

Query: 27  SSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLTLSRCSGAHVLEFLRYLDQF 86
           SSSSSSS  S ++  SRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQF
Sbjct: 32  SSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQF 91

Query: 87  GKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDSLIGRLRAAFEENGGMPEANPFGARA 146
           GKTKVHT +CPF+GHPNPPAPC CPLRQAWGSLD+LIGRLRAAFEENGG PE NPFGARA
Sbjct: 92  GKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARA 151

Query: 147 IRLYLREVRDVQSKARGISYEKKKRKRPQQQILPPP 183
           +RLYLREVRD Q+KARGISYEKKKRKRP     PPP
Sbjct: 152 VRLYLREVRDSQAKARGISYEKKKRKRP-----PPP 182

[Close]
BLAST of CmaCh02G017450 vs. TAIR10
Match: AT5G28490.1 (AT5G28490.1 Protein of unknown function (DUF640))

HSP 1 Score: 240.4 bits (612), Expect = 9.1e-64
Identity = 116/157 (73.89%), Postives = 136/157 (86.62%), Query Frame = 1 

Query: 27  SSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLTLSRCSGAHVLEFLRYLDQF 86
           + + +SS+  +  S+SRYENQKRRDWNTFCQYL+NHRPPL+L  CSGAHVLEFLRYLDQF
Sbjct: 9   NKNPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQF 68

Query: 87  GKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDSLIGRLRAAFEENGGMPEANPFGARA 146
           GKTKVH   C F+G PNPPAPCPCPLRQAWGSLD+LIGRLRAA+EENGG PEANPFG+RA
Sbjct: 69  GKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRA 128

Query: 147 IRLYLREVRDVQSKARGISYEKKKRK--RPQQQILPP 182
           +RL+LREVRD Q+KARG+SYEKK+++  R + Q  PP
Sbjct: 129 VRLFLREVRDFQAKARGVSYEKKRKRVNRQKPQTQPP 165

[Close]
BLAST of CmaCh02G017450 vs. TAIR10
Match: AT3G04510.1 (AT3G04510.1 Protein of unknown function (DUF640))

HSP 1 Score: 235.3 bits (599), Expect = 2.9e-62
Identity = 110/151 (72.85%), Postives = 133/151 (88.08%), Query Frame = 1 

Query: 28  SSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFG 87
           S+ + SS SS  S+SRYENQKRRDWNTFCQYL+NH PPL+L+ CSGAHVL+FLRYLDQFG
Sbjct: 18  STQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFG 77

Query: 88  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDSLIGRLRAAFEENGGMPEANPFGARAI 147
           KTKVH   C F+G PNPPAPCPCPLRQAWGSLD+LIGRLRAA+EENGG PE +PFG+R++
Sbjct: 78  KTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSV 137

Query: 148 RLYLREVRDVQSKARGISYEKKKRKRPQQQI 179
           R++LREVRD Q+K+RG+SYEKK+++   +QI
Sbjct: 138 RIFLREVRDFQAKSRGVSYEKKRKRVNNKQI 168

[Close]
BLAST of CmaCh02G017450 vs. TAIR10
Match: AT5G58500.1 (AT5G58500.1 Protein of unknown function (DUF640))

HSP 1 Score: 233.8 bits (595), Expect = 8.5e-62
Identity = 111/157 (70.70%), Postives = 133/157 (84.71%), Query Frame = 1 

Query: 29  SSSSSSSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGK 88
           +++ +++SSSSS SRYE+QKRRDWNTF QYL+NH+PPL LSRCSGAHVLEFL+YLDQFGK
Sbjct: 5   TAAKAAASSSSSPSRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGK 64

Query: 89  TKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDSLIGRLRAAFEE-NGGMPEANPFGARAI 148
           TKVH   CPF+G PNPP+ C CPL+QAWGSLD+LIGRLRAAFEE  GG+PE+NPF A+A+
Sbjct: 65  TKVHATACPFFGQPNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAV 124

Query: 149 RLYLREVRDVQSKARGISYEKKKRKRPQQQILPPPTG 185
           R+YL+EVR  Q+KARGI Y+KKKRKRP      P  G
Sbjct: 125 RIYLKEVRQTQAKARGIPYDKKKRKRPHTDTATPIAG 161

[Close]
BLAST of CmaCh02G017450 vs. NCBI nr
Match: gi|700202769|gb|KGN57902.1| (hypothetical protein Csa_3G383780 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 3.6e-78
Identity = 158/185 (85.41%), Postives = 165/185 (89.19%), Query Frame = 1 

Query: 1   MDSI-TEFEGLNA---QQFG----GSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDW 60
           MDSI +EFE LN    Q FG     +++ NL  GSSSSSSSSSSSS    RYENQKRRDW
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSS----RYENQKRRDW 60

Query: 61  NTFCQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL 120
           NTFCQYLKNHRPPL LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL
Sbjct: 61  NTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL 120

Query: 121 RQAWGSLDSLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRK 178
           RQAWGSLD+LIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRK
Sbjct: 121 RQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRK 180

[Close]
BLAST of CmaCh02G017450 vs. NCBI nr
Match: gi|778681005|ref|XP_011651439.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 3.6e-78
Identity = 158/185 (85.41%), Postives = 165/185 (89.19%), Query Frame = 1 

Query: 1   MDSI-TEFEGLNA---QQFG----GSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDW 60
           MDSI +EFE LN    Q FG     +++ NL  GSSSSSSSSSSSS    RYENQKRRDW
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSS----RYENQKRRDW 60

Query: 61  NTFCQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL 120
           NTFCQYLKNHRPPL LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL
Sbjct: 61  NTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL 120

Query: 121 RQAWGSLDSLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRK 178
           RQAWGSLD+LIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRK
Sbjct: 121 RQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRK 180

[Close]
BLAST of CmaCh02G017450 vs. NCBI nr
Match: gi|778681002|ref|XP_004152052.2| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 3.6e-78
Identity = 158/185 (85.41%), Postives = 165/185 (89.19%), Query Frame = 1 

Query: 1   MDSI-TEFEGLNA---QQFG----GSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDW 60
           MDSI +EFE LN    Q FG     +++ NL  GSSSSSSSSSSSS    RYENQKRRDW
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSS----RYENQKRRDW 60

Query: 61  NTFCQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL 120
           NTFCQYLKNHRPPL LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL
Sbjct: 61  NTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL 120

Query: 121 RQAWGSLDSLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRK 178
           RQAWGSLD+LIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRK
Sbjct: 121 RQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRK 180

[Close]
BLAST of CmaCh02G017450 vs. NCBI nr
Match: gi|659093194|ref|XP_008447416.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 1.0e-77
Identity = 157/185 (84.86%), Postives = 164/185 (88.65%), Query Frame = 1 

Query: 1   MDSI-TEFEGLNAQQ---FG----GSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDW 60
           MDSI +EFE LN      FG     +++ NL  GSSSSSSSSSSSS    RYENQKRRDW
Sbjct: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSS----RYENQKRRDW 60

Query: 61  NTFCQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL 120
           NTFCQYLKNHRPPL LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL
Sbjct: 61  NTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPL 120

Query: 121 RQAWGSLDSLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRK 178
           RQAWGSLD+LIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRK
Sbjct: 121 RQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRK 180

[Close]
BLAST of CmaCh02G017450 vs. NCBI nr
Match: gi|743850764|ref|XP_011028817.1| (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Populus euphratica])

HSP 1 Score: 294.3 bits (752), Expect = 1.5e-76
Identity = 151/192 (78.65%), Postives = 165/192 (85.94%), Query Frame = 1 

Query: 1   MDSITEFEGLNAQQFGGSSVPNLGGGSSSSSSSSSSSSSSNSRYENQKRRDWNTFCQYLK 60
           M+SI E E  N++    +++ N     S S+SSS SSS++ SRYENQKRRDWNTF QYLK
Sbjct: 1   MNSIPEMESSNSENISFNNIGNSPTAMSVSNSSSPSSSTAPSRYENQKRRDWNTFGQYLK 60

Query: 61  NHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120
           NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD
Sbjct: 61  NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLD 120

Query: 121 SLIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKR-PQQQI- 180
           +LIGRLRAAFEENGG PEANPFGARA+RLYLREVRD+QSKARG+SYEKKKRKR PQQQI 
Sbjct: 121 ALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGVSYEKKKRKRPPQQQIQ 180

Query: 181 -----LPPPTGA 186
                LPPP GA
Sbjct: 181 SLPLPLPPPPGA 192

The following BLAST results are available for this feature:
BLAST of CmaCh02G017450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSH3_ARATH5.6e-7181.93Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana GN=LSH3 PE=1 ... [more]
LSH4_ARATH6.1e-7083.97Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana GN=LSH4 PE=1 ... [more]
G1L6_ORYSI4.0e-6970.97Protein G1-like6 OS=Oryza sativa subsp. indica GN=OsI_09389 PE=3 SV=1[more]
G1L6_ORYSJ4.0e-6970.97Protein G1-like6 OS=Oryza sativa subsp. japonica GN=G1L6 PE=1 SV=1[more]
G1L4_ORYSJ5.7e-6871.35Protein G1-like4 OS=Oryza sativa subsp. japonica GN=G1L4 PE=1 SV=2[more]
BLAST of CmaCh02G017450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB62_CUCSA2.5e-7885.41Uncharacterized protein OS=Cucumis sativus GN=Csa_3G383780 PE=4 SV=1[more]
B9GS06_POPTR1.8e-7677.84Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03860g PE=4 SV=2[more]
A0A061DNN8_THECC2.3e-7681.38IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao GN=TCM_004015 P... [more]
A0A0D2QFS1_GOSRA5.8e-7577.60Uncharacterized protein OS=Gossypium raimondii GN=B456_001G178100 PE=4 SV=1[more]
F6HZL1_VITVI7.5e-7578.61Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03530 PE=4 SV=... [more]
BLAST of CmaCh02G017450 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G31160.13.1e-7281.93 Protein of unknown function (DUF640)[more]
AT3G23290.23.5e-7183.97 Protein of unknown function (DUF640)[more]
AT5G28490.19.1e-6473.89 Protein of unknown function (DUF640)[more]
AT3G04510.12.9e-6272.85 Protein of unknown function (DUF640)[more]
AT5G58500.18.5e-6270.70 Protein of unknown function (DUF640)[more]
BLAST of CmaCh02G017450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202769|gb|KGN57902.1|3.6e-7885.41hypothetical protein Csa_3G383780 [Cucumis sativus][more]
gi|778681005|ref|XP_011651439.1|3.6e-7885.41PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativu... [more]
gi|778681002|ref|XP_004152052.2|3.6e-7885.41PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativu... [more]
gi|659093194|ref|XP_008447416.1|1.0e-7784.86PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo][more]
gi|743850764|ref|XP_011028817.1|1.5e-7678.65PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006936ALOG_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010492 maintenance of shoot apical meristem identity
biological_process GO:0010199 organ boundary specification between lateral organs and the meristem
biological_process GO:0048441 petal development
biological_process GO:0009886 post-embryonic animal morphogenesis
biological_process GO:0048834 specification of petal number
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh02G017450.1CmaCh02G017450.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 36..156
score: 1.4
IPR006936ALOG domainPROFILEPS51697ALOGcoord: 43..170
score: 84
NoneNo IPR availablePANTHERPTHR31165FAMILY NOT NAMEDcoord: 1..177
score: 3.8E
NoneNo IPR availablePANTHERPTHR31165:SF12SUBFAMILY NOT NAMEDcoord: 1..177
score: 3.8E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh02G017450Watermelon (97103) v2cmawmbB648
CmaCh02G017450Watermelon (97103) v2cmawmbB653
CmaCh02G017450Watermelon (97103) v2cmawmbB657
CmaCh02G017450Wax gourdcmawgoB0715
CmaCh02G017450Wax gourdcmawgoB0726
CmaCh02G017450Wax gourdcmawgoB0730
CmaCh02G017450Cucurbita maxima (Rimu)cmacmaB265
CmaCh02G017450Cucurbita maxima (Rimu)cmacmaB365
CmaCh02G017450Cucurbita maxima (Rimu)cmacmaB450
CmaCh02G017450Cucurbita maxima (Rimu)cmacmaB502
CmaCh02G017450Cucurbita maxima (Rimu)cmacmaB511
CmaCh02G017450Cucumber (Gy14) v1cgycmaB0064
CmaCh02G017450Cucumber (Gy14) v1cgycmaB0719
CmaCh02G017450Cucumber (Gy14) v1cgycmaB1057
CmaCh02G017450Cucurbita moschata (Rifu)cmacmoB579
CmaCh02G017450Cucurbita moschata (Rifu)cmacmoB590
CmaCh02G017450Cucurbita moschata (Rifu)cmacmoB598
CmaCh02G017450Cucurbita moschata (Rifu)cmacmoB619
CmaCh02G017450Cucurbita moschata (Rifu)cmacmoB622
CmaCh02G017450Cucurbita moschata (Rifu)cmacmoB631
CmaCh02G017450Wild cucumber (PI 183967)cmacpiB591
CmaCh02G017450Wild cucumber (PI 183967)cmacpiB599
CmaCh02G017450Wild cucumber (PI 183967)cmacpiB600
CmaCh02G017450Cucumber (Chinese Long) v2cmacuB585
CmaCh02G017450Cucumber (Chinese Long) v2cmacuB594
CmaCh02G017450Cucumber (Chinese Long) v2cmacuB597
CmaCh02G017450Melon (DHL92) v3.5.1cmameB580
CmaCh02G017450Melon (DHL92) v3.5.1cmameB568
CmaCh02G017450Melon (DHL92) v3.5.1cmameB576
CmaCh02G017450Watermelon (Charleston Gray)cmawcgB565
CmaCh02G017450Watermelon (Charleston Gray)cmawcgB568
CmaCh02G017450Watermelon (97103) v1cmawmB558
CmaCh02G017450Watermelon (97103) v1cmawmB565
CmaCh02G017450Watermelon (97103) v1cmawmB611
CmaCh02G017450Cucurbita pepo (Zucchini)cmacpeB600
CmaCh02G017450Cucurbita pepo (Zucchini)cmacpeB615
CmaCh02G017450Cucurbita pepo (Zucchini)cmacpeB631
CmaCh02G017450Cucurbita pepo (Zucchini)cmacpeB640
CmaCh02G017450Cucurbita pepo (Zucchini)cmacpeB647
CmaCh02G017450Cucurbita pepo (Zucchini)cmacpeB650
CmaCh02G017450Bottle gourd (USVL1VR-Ls)cmalsiB532
CmaCh02G017450Bottle gourd (USVL1VR-Ls)cmalsiB560
CmaCh02G017450Bottle gourd (USVL1VR-Ls)cmalsiB585
CmaCh02G017450Bottle gourd (USVL1VR-Ls)cmalsiB586
CmaCh02G017450Cucumber (Gy14) v2cgybcmaB226
CmaCh02G017450Cucumber (Gy14) v2cgybcmaB228
CmaCh02G017450Cucumber (Gy14) v2cgybcmaB391
CmaCh02G017450Cucumber (Gy14) v2cgybcmaB392
CmaCh02G017450Melon (DHL92) v3.6.1cmamedB648
CmaCh02G017450Melon (DHL92) v3.6.1cmamedB657
CmaCh02G017450Melon (DHL92) v3.6.1cmamedB660
CmaCh02G017450Silver-seed gourdcarcmaB0315
CmaCh02G017450Silver-seed gourdcarcmaB1051
CmaCh02G017450Silver-seed gourdcarcmaB1084
CmaCh02G017450Silver-seed gourdcarcmaB1323
CmaCh02G017450Silver-seed gourdcarcmaB1492
CmaCh02G017450Cucumber (Chinese Long) v3cmacucB0698
CmaCh02G017450Cucumber (Chinese Long) v3cmacucB0700
CmaCh02G017450Cucumber (Chinese Long) v3cmacucB0709
CmaCh02G017450Cucumber (Chinese Long) v3cmacucB0710